|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014236 ID=TCONS_00014236|Name=TCONS_00014236|organism=Clytia hemisphaerica|type=transcript|length=2185bp
CTTTTATACCTAGCATAAAATAATATTACAATCCAATAAATGGAACTTAA
TCACATCTCATTTGTAGTGAGTTAGGAACAGTACTTCGACTGAAAAATAA
TACCAATTCGCCTAACCCCCGAATCCCAagaacaaaaccaaacaacaatC
TAAGTATGtacaaatttgtaaaaaaaatggaTTGAAATTTGTAAGTAACA
CTGTTTAGGGATTGAAAGGAATTCAATGTCTCAAGATACCAATACTAGGG
TgtcttagaccatgttcagacgttacgctTTCGTATCGATCCGGTGTGGT
ATTTGTTACGGATAGGAAGTGTTTCATACtcatttcggaacgtttcggag
caagaaaacgaaacagttccgttccgatgaaagtagtggagcgaaaccgt
ttcgatctgttttgctttgtaacgtcttcatTTTCgacgtttcaaatttt
gatgttcacacagtgtttcggaaccgtttcgtttcggagcgaaacggaac
gtagcgtgtgaacatggtcttaataaaatagaaaagttttacTGTGTCCC
AATAATTACACCATCAAGAAAAATAAGACATTTTCATACGAAAATAAAAG
GCAAAAGCCgaacagaaaacagaaaacagagAACAGATAAAGCTAAAGCG
TGCAGCGATCAGTTTTAATCTagccaaaaagaatttcaaaagaatacAAC
TCTTGAAGTTCTTTTGAATACACCAATTCAAATAAATTAATTGTATGCTA
AAGAAAGATatggaaataaataaattgaataaaagaacTAATGGATAAAA
CTTGAAGCAGAATTTGAGAGGCTAGGTACACGATGAAACACGCGACCTTG
TTACACGAACATAGTCTGGTTGTTCGTCTCCATTTTCTCCTATAAAATCA
CCACAACTGTTCaaacgtcttctttttttacTCCCATTAACAAGACATTT
CAGTTTCGTTATAGAGGCTGCGTGACCAGTAAATTCGCTCTGCTCAGCAA
AAGTGTCttcaattgttttattatttaggCGCGGACTGTTACGACGTTGT
GGCTCCGCGATAGGCGGTAGGTTACGAAATCGTTTCTTCCCTTTACGAGC
TAACGAAGAAGGCTTAAAAACATTATCGTTTCCTTGCGATGTTGTGTCGA
TATAAAGGTCTAGTGGTTGACCTGAATTCGCAGTCAAAAGCTTATCCTTA
GGATCCAGTCCATTGGATATAGGTCTATTATcacttttattattttcatt
ggTAGAGCTCTCTTTCGTATTATCAAGAGAATTTATTAAAGGACTCGTTT
CATCTGTTGGACATTCATCGTGTGTTTTTAATAACGTTTTTTCGTCCGCC
GGTTTTTCATCATTCACGTTAATTTCGGTTTTAATTTTAGTCATTCGACC
AGCATCCTCACAATCGGATTCGTCGTCTGTCAGGAAAATAGCATTGAAAG
TTTCCCtggaaatttctttcttttcaatctCATTGCCACCCAGTTcatct
ttttcaaaatctaaccTTTTGACAGCAGTTGACGAGCCCTCAGTGCATTC
TTCAGGGGAAATTGCAACTTGATCCTTTTCgctttttagtttttcatttt
taattttcacgttATTATCCTGAGTGTCGAacgatttattttctttctta
aaaaattcaaagatgTTTCGCTGCGTTGACGCTGTAGCATGATCAAGCTT
CACAGTTCGTATCATACCATTAATTTTCGGGGAACTGGCACGACTAGATC
GCCTCGATGATTGGTTTGATCTCGGAACCGGTTTGTCTCGTTCCAGATCC
TTTTCGTTAAATTTCTCAATGATACTCGTATCTAAGAGTTCGTCATCTTC
TTCAATAGTTGAATCAAACATGGTATCTGTTCGTCCgttttcttctttcc
aaagCTTCTCATTCACATAATTTTCAGAGAAATCGTTGAACTGAGTCGAT
CGTTGTGTAAGGAATTCTAATTTATCACCACCAGACCAATCTTCATTTTC
GTCCAGCAGCATATCGTTTTGTTTGTAAAAGACTTCCATGGAAGTACGTT
GTATTTCTTTACGCACTTTCTCACGCCGTACGATCATGTAACAGAGATTC
CGTAGCTAGAATAAAAAGAGAACCGTTTGAGCTAATGAAGCATGAGTCAG
TAAATAGTTTATCTGACAGTAAAAATTAGTCGTTT Run BLAST on NCBI transcript from alignment at sc0000183:214890..217139- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014236 ID=TCONS_00014236|Name=TCONS_00014236|organism=Clytia hemisphaerica|type=transcript|length=2250bp|location=Sequence derived from alignment at sc0000183:214890..217139- (Clytia hemisphaerica)
CTTTTATACCTAGCATAAAATAATATTACAATCCAATAAATGGAACTTAA
TCACATCTCATTTGTAGTGAGTTAGGAACAGTACTTCGACTGAAAAATAA
TACCAATTCGCCTAACCCCCGAATCCCAAGAACAAAACCAAACAACAATC
TAAGTATGTACAAATTTGTAAAAAAAATGGATTGAAATTTGTAAGTAACA
CTGTTTAGGGATTGAAAGGAATTCAATGTCTCAAGATACCAATACTAGGG
TGTCTTAGACCATGTTCAGACGTTACGCTTTCGTATCGATCCGGTGTGGT
ATTTGTTACGGATAGGAAGTGTTTCATACTCATTTCGGAACGTTTCGGAG
CAAGAAAACGAAACAGTTCCGTTCCGATGAAAGTAGTGGAGCGAAACCGT
TTCGATCTGTTTTGCTTTGTAACGTCTTCATTTTCGACGTTTCAAATTTT
GATGTTCACACAGTGTTTCGGAACCGTTTCGTTTCGGAGCGAAACGGAAC
GTAGCGTGTGAACATGGTCTTAATAAAATAGAAAAGTTTTACTGTGTCCC
AATAATTACACCATCAAGAAAAATAAGACATTTTCATACGAAAATAAAAG
GCAAAAGCCGAACAGAAAACAGAAAACAGAGAACAGATAAAGCTAAAGCG
TGCAGCGATCAGTTTTAATCTAGCCAAAAAGAATTTCAAAAGAATACAAC
TCTTGAAGTTCTTTTGAATACACCAATTCAAATAAATTAATTGTATGCTA
AAGAAAGATATGGAAATAAATAAATTGAATAAAAGAACTAATGGATAAAA
CTTGAAGCAGAATTTGAGAGGCTAGGTACACGATGAAACACGCGACCTTG
TTACACGAACATAGTCTGGTTGTTCGTCTCCATTTTCTCCTATAAAATCA
CCACAACTGTTCAAACGTCTTCTTTTTTTACTCCCATTAACAAGACATTT
CAGTTTCGTTATAGAGGCTGNCTGTTCAAACGTCTTCTCTTTTTACTCCC
ATTAACAAGACATTTCAGTTTCGTTATTGAGGCTGCGTGACCAGTAAATT
CGCTCTGCTCAGCAAAAGTGTCTTCAATTGTTTTATTATTTAGGCGCGGA
CTGTTACGACGTTGTGGCTCCGCGATAGGCGGTAGGTTACGAAATCGTTT
CTTCCCTTTACGAGCTAACGAAGAAGGCTTAAAAACATTATCGTTTCCTT
GCGATGTTGTGTCGATATAAAGGTCTAGTGGTTGACCTGAATTCGCAGTC
AAAAGCTTATCCTTAGGATCCAGTCCATTGGATATAGGTCTATTATCACT
TTTATTATTTTCATTGGTAGAGCTCTCTTTCGTATTATCAAGAGAATTTA
TTAAAGGACTCGTTTCATCTGTTGGACATTCATCGTGTGTTTTTAATAAC
GTTTTTTCGTCCGCCGGTTTTTCATCATTCACGTTAATTTCGGTTTTAAT
TTTAGTCATTCGACCAGCATCCTCACAATCGGATTCGTCGTCTGTCAGGA
AAATAGCATTGAAAGTTTCCCTGGAAATTTCTTTCTTTTCAATCTCATTG
CCACCCAGTTCATCTTTTTCAAAATCTAACCTTTTGACAGCAGTTGACGA
GCCCTCAGTGCATTCTTCAGGGGAAATTGCAACTTGATCCTTTTCGCTTT
TTAGTTTTTCATTTTTAATTTTCACGTTATTATCCTGAGTGTCGAACGAT
TTATTTTCTTTCTTAAAAAATTCAAAGATGTTTCGCTGCGTTGACGCTGT
AGCATGATCAAGCTTCACAGTTCGTATCATACCATTAATTTTCGGGGAAC
TGGCACGACTAGATCGCCTCGATGATTGGTTTGATCTCGGAACCGGTTTG
TCTCGTTCCAGATCCTTTTCGTTAAATTTCTCAATGATACTCGTATCTAA
GAGTTCGTCATCTTCTTCAATAGTTGAATCAAACATGGTATCTGTTCGTC
CGTTTTCTTCTTTCCAAAGCTTCTCATTCACATAATTTTCAGAGAAATCG
TTGAACTGAGTCGATCGTTGTGTAAGGAATTCTAATTTATCACCACCAGA
CCAATCTTCATTTTCGTCCAGCAGCATATCGTTTTGTTTGTAAAAGACTT
CCATGGAAGTACGTTGTATTTCTTTACGCACTTTCTCACGCCGTACGATC
ATGTAACAGAGATTCCGTAGCTAGAATAAAAAGAGAACCGTTTGAGCTAA
TGAAGCATGAGTCAGTAAATAGTTTATCTGACAGTAAAAATTAGTCGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014236-exon-sc0000183-1575043694:216174..217139 | TCONS_00014236-exon-sc0000183-1575043694:216174..217139 | Clytia hemisphaerica | exon |
| TCONS_00014236-exon-sc0000183-1575043694:214890..216108 | TCONS_00014236-exon-sc0000183-1575043694:214890..216108 | Clytia hemisphaerica | exon |
| TCONS_00014236-exon-sc0000183-1510915933:216174..217139 | TCONS_00014236-exon-sc0000183-1510915933:216174..217139 | Clytia hemisphaerica | exon |
| TCONS_00014236-exon-sc0000183-1510915933:214890..216108 | TCONS_00014236-exon-sc0000183-1510915933:214890..216108 | Clytia hemisphaerica | exon |
| TCONS_00014236-exon-sc0000183-1491911889:216174..217139 | TCONS_00014236-exon-sc0000183-1491911889:216174..217139 | Clytia hemisphaerica | exon |
| TCONS_00014236-exon-sc0000183-1491911889:214890..216108 | TCONS_00014236-exon-sc0000183-1491911889:214890..216108 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000183 | supercontig | sc0000183:214890..217139 - |
Blast
The following BLAST results are available for this feature:
|
