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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014202 ID=TCONS_00014202|Name=TCONS_00014202|organism=Clytia hemisphaerica|type=transcript|length=2242bpRun BLAST on NCBI transcript from alignment at sc0000183:279386..304512+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014202 ID=TCONS_00014202|Name=TCONS_00014202|organism=Clytia hemisphaerica|type=transcript|length=25127bp|location=Sequence derived from alignment at sc0000183:279386..304512+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00014202 vs. Swiss-Prot (Human)
Match: SYN1 (Synapsin-1 OS=Homo sapiens GN=SYN1 PE=1 SV=3) HSP 1 Score: 291.582 bits (745), Expect = 8.378e-87 Identity = 133/305 (43.61%), Postives = 207/305 (67.87%), Query Frame = 3
Query: 198 LLVIDDRSDTEAWSRVFKGCSLHGIYDVRVEQVALSDLEVKSSSEKGASISMRVVRNGAVIARSLRPDFVLFREYVKGGDLKTDHTNVLLGLMHGLVPSVNSLLTTFNFLQKPVVYAELLKIRQRLGKENFPLIEQNYYQSYYEMLLPPSLPVVIKVGSANSGLGKVCVASPRGFQDVASLVSLTNTYATSESFLEGKFDLRIYKFGQRYKVYKRKSLCDAWKTNTGTSTVEEIALTERYKNWADECAGLFDGLDILSVEVIHTKDDKEYIIEVNNIPPSICPDKREDDMKCIANVVLKKMEKEF 1112
LLVID+ W++ FKG +HG D++VEQ SDL + + + G S+ M V+RNG + RSL+PDFVL R++ D+ ++++GL + +PSVNSL + +NF KP V+A+++++ ++LG E FPLI+Q +Y ++ EML + PVV+K+G A+SG+GKV V + FQD+AS+V+LT TYAT+E F++ K+D+R+ K GQ YK Y R S+ WKTNTG++ +E+IA+++RYK W D C+ +F GLDI +VE +H KD +++IIEV + D +++D + I +V+ KM +
Sbjct: 116 LLVIDEPHTD--WAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRVQKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMAQAL 418 The following BLAST results are available for this feature:
BLAST of TCONS_00014202 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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