TCONS_00014178 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014178
Unique NameTCONS_00014178
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length876

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014178 ID=TCONS_00014178|Name=TCONS_00014178|organism=Clytia hemisphaerica|type=transcript|length=876bp
ACTAACGATAATGTTACTTCTTAAAAAGCACCGACAGTTTGGTGATGGTG
AtctatcattttttttattttaacctGGTAGTGTAAATTTGAAATGAGAG
GAAATTATTGTTGACAATTTCagcaatttttgaattaagtTCATCACACT
TCAAAGAAAGGACGAGATATCCTGGCTATGAATTGGTTAACTATATGTTT
AGTTGCTGTGACGTACGTCATAGTGGCTAAATCGCAAGTATGCATTGACT
CGAGCAGAAGATGTGTATATTGGTCACGTTACTGTAGAACAAGCACATAT
GTTGCACTACAATGTAGAAGGACGTGTGGACGGTGCCTTATCCCTCGCCC
AAGACCAGTCGTTCCATCTAGAAGATGTTTCGATATTGACCGTCGTTGTG
TGTACTGGAGGAATCACGGCTATTGTCGAAGATATTATTATCAAAATCGA
TGTCAAAAAACTTGTGGTGTATGTAGAGCACTTCCAACGACAAGAGTATG
CGTGGACAGAGACTCGAGATGTCCTTTTTGGGCAAGACGCTATCAATGTT
TCCTCAATTCAAGATATATGAATCGGAATTGTAAAAAATCTTGTGGAAAA
TGTCCTAAACCAAAACCAAAACCAAAGCCAAGGCCAAGAACAACAAAGAC
AACGACAACCACAACAACCACAACCACATCTACGACCACTTCAACTGATC
CACCACCACCTGTTCCAGAAGTTACAAAACCTCCAACTCCAAGAGTTACA
ACTGATGGAATCCCGCCACCTGTTCCAGAAGTTACAAAACCTCCAACTCC
AAAAGTTAAAACTGATGGAATCCCGCCGCCTGTTCCAGAAGTTACAAAAC
CTCCAACTTCAAAAGTTACAAGTGAG
Run BLAST on NCBI

transcript from alignment at sc0000183:28108..33388+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014178 ID=TCONS_00014178|Name=TCONS_00014178|organism=Clytia hemisphaerica|type=transcript|length=5281bp|location=Sequence derived from alignment at sc0000183:28108..33388+ (Clytia hemisphaerica)
ACTAACGATAATGTTACTTCTTAAAAAGCACCGACAGTTTGGTGATGGTG
AtctatcattttttttattttaacctGGTAGTGTAAATTTGAAATGAGAG
GAAATTATTGTTGACAATTTCagcaatttttgaattaagtTCATCACACT
TCAAAGAAAGGACGAGATATCCTGGCTATGAATTGGTTAACTATATGTTT
AGTTGCTGTGACGTACGTCATAGTGGCTAAATCGCAAGGTAGGACTCTTA
GACGATTCTTTCGTCCGTTGGATGGAGAGTATTCGCGGAGAAATATACAT
ATGTACGGAGCTTATAGCCGTAATGGGCGGCAGTAGAAGCTTGAAACATA
GTAAAAACATCCATCACTTCTTACTCCGACCCGGTCTTCCCTTGCTTTCC
GAATTCTTTCCACTTCCTTGACTTAATGGTTTTTATTTCTAAGGCCCTCA
ATATGTGATTAAGAGACTGTTTAGTAATCAACGAAAAGACGATTTCATCT
ATATTCCCCCTCTATTGACAATTGGAGCAAAAGAGGTCACGCAACACTCT
CAAATACAATCAAAAGCGACAAGATTTCATTTCTAGATTGAATTTTAATA
GATGATTAAGGAGTCTTTCttaaacatttttggaaacGTTTTCCGAATTT
ATCGTCAGctttgaaaattgacttttaatGTAActgattttagtgaaaaa
gtctCAATTTCAAAAGGCAACTATTTTGACACTAGATCTTTCGTTCCACC
TACAGTATGCATTGACTCGAGCAGAAGATGTGTATATTGGTCACGTTACT
GTAGAACAAGCACATATGTTGCACTACAATGTAGAAGGACGTGTGGACGG
TGCCTTATCCCTCGCCCAAGACCAGTCGGTAAAGTACCTTGGACGCATTG
GACGAGAACAATCGAAATAGTTGTTTGTACAGGCCCAACTtaccctaaaa
atcaaaaattcaaaatcaatcaCTTTCCTCAATCACTTCTTTGTTCGAAT
TTCTATCCGGTTGAAATTTTACCCTTGTTTCTATTCTTTTCTCACCTTAC
CTTATTTGAATTTGAGTAAATTCATACGTAAAATAACAAAACTCTTTCAG
GGAAAGAAGTCAATTTGAGCAGATTTGAGATATATTTTGGCAAAAAGAGG
CAAATCTTTTACAGTCGAAATTTCTCCTTATCTACTTAACATGGACCCCC
GTCCGATAAAACATCTGTCACGTGCAGAATTAAACAgctataagaacatt
tttgagtCGTTTTAGGGATATTTTTGGGTTTATTTCCTTTATATCCGCCA
GTTCCATCTAGAAGATGTTTCGATATTGACCGTCGTTGTGTGTACTGGAG
GAATCACGGCTATTGTCGAAGATATTATTATCAAAATCGATGTCAAAAAA
CTTGTGGTGTATGTAGAGGTAagaattttttcattgcaaaaAGAATGTTT
CAATGATTGTGATTAGAATATAGTTCTGGGATAATGCAAAGTACAAGATC
TCAATGCAATAGATACATGTGTTATCAAGCTAATGCCTTTACGTTTAACT
GGCCTAACTTAAGAGAGTTTTCAGGCTTATACAACAAGATTCAACCATCA
TTTAGTTGACAGCATCAGAAGAGAGGAAAGAAGAATAAAGATAGCTAAAT
AGACAAAGTTATAACATCGGGTACAGACCCACAAATAATATAAATCTGTA
CTAAGCCGTCAGAAGATGACAACAATATAAACATAAAGATATGCAATAAA
TTATGGGTAGCGACTTGCTTCATATCGACTTAAGATCGTATTGACTAAAA
TTCATTAAACTACTTTTGTCTCTATCATTAGCACTTCCAACGACAAGAGT
ATGCGTGGACAGAGACTCGAGATGTCCTTTTTGGGCAAGACGCTATCAAT
GTTTCCTCAATTCAAGATATATGAATCGGAATTGTAAAAAATCTTGTGGA
AAATGTCCTAAACGTAACGACTACAACATACtatgttggacggtgaaaaa
gaatgcggctattatattttgatttttcccgacatgtttcggactcggtc
cgttctcaagggaatgatatttctatataaaaaaaagtgtttctatacaa
aattatttgacgtcaaattggaCAAATACGTCATTTTAGGCGATTTCGGC
TTGAAAATGGGTTGGTGTAAATGGGGCCATCTGATAAGTTGAATTCGGTC
TAAACGACTACAACATactacatacatacatacataactTCATCCCTCTC
AACATACTATTACCATTTAAACTATGAATCAGTGCCCTTTTTTGAGTATT
CGTCTGCAATCGAGGAAAAAGTGAAAACGTTGGGtgtaaattttgaatat
ttagtgTACAATCTTTTCGCCATTTTCTTAAGTCATTCGATCTGGGTAAA
ATTATAGAGATCAGCACCTTTTCTATTTCATAGCAAAACCAAAACCAAAG
CCAAGGCCAAGAACAACAAAGACAACGACAACCACAACAACCACAACCAC
ATCTACGACCACTTCAAGTAGAAAAAATCCACTTATCCCAAAGCGTACCT
CGAGGGAACCTTGCCCTTGTTGTAGATGCTCAAAATAATAGTAATAGAAC
AGAACGATAACAGTAATAGAACTAGCCGTCATCCGGGTCGCACCCGTCGA
TTAGAGTGTGCCTTACGCATGACAAAGCCCTTAGGATGGTGGGTAGGGTG
TTTTAGGGATTTATTCAAACTCTAAGAACGAAAAATTACCACTTAAAATC
GATCGAAATTCAACAAGTGAAATAAGAAAACAAAGAGAAACAAACGAGTA
CAACAAAAATTTTAGGAATGAATTTCACAAAGACGAccatcaaaatcaac
aaaatcaactTTGTTTCGCTCATTTTCAGCTGATCCACCACCACCTGTTC
CAGAAGTTACAAAACCTCCAACTCCAAGAGTTACAAGTAAGTCGATATCT
GAATCTTAGAAATCCCTAAAAATATTAGTCAGCGAATCAATCTTAAACat
aacaaatctcttttgacttTAGCTGATGGAATCCCGCTACCTGTTCCAGA
AGTTACAAAACCTCCAACTCCAAAAGTTACAAGTAAGTTAATATCTGAAT
CTTGGAAGTAACCCAAAATATTAATCAGAGGATCAGTCTTAAACataaca
aatctcttttgacttTAGCTGATGGAATCCCGCCGCCTGTTCCAGAAGTG
ACAAAACCTCCAACCTCAAAAGTTACAAGTACCATAAGTCAATATCTGAA
TCTTGGAAATCCTCCAAAATATAAAAGAGAGGATCAATCTTAAACataac
aaatctcttttgacttTAGCTGATGGAATCCCGCCACCTGTTCCAGAAGT
TACAAAACCTCCAACTCCAAAAGTTAAAAGTAAGTCAATATCTGAATCTT
AGAAATCCCTCAAAATATAAAACAGAGGATCAATCTTAAACataacaaat
ctcttttgacttTAGCTGATGGAATCCCACCACCTGTTCCAGAAGTGACA
AAACCTCCAACTCCAAAAGTTACAAGTAAGTTAATATCTGAATCTTAAAA
GTAACCCAAAATATTAATCAGAGGATCAATCTTAAACATAACAAATCTCT
TTTAACTTTAGCTGATGGAATCCCGCCACCTGTTCCAGAAGTTACAAAAC
CTccaactcaaaaagttaaaagtaagTCAATATCTGAATCTTAGAAGTAA
CCCAAAATATTAATCAGAGAATAAATTTTAAACCAAAAGAATTCTTTTGA
CTTTAGCTGATGGAATCCCGCCGCCTGTTCCAGAAGTTACAAAACCTCCA
ACTCCAAAAGTTAAAAGTAAGTTAATATCTGAATCTTAGAAGTAACCCAA
AATATTAAACAGAGGATCAGTCTTAAACataacaaatctcttttgacttT
AGCTGATGGAATCCCGCCGCCTGTTCCAGAAGTTACAAAACCTCCAACTT
CAAAAGTTACAAGTGAGTCAATATCTGAATCTTAGAAATccataaaaata
ttaaacagAGGATCAGTCTTAAACataacaaatctcttttgacttTAGCT
GATGGAATCCCGCCGCCTGTTTCAGAAGTTACAAAACctccaatttcaaa
atttacaagTGAGTCAATATCTGAATCTTAGAAGTAACCCAAAATATTAA
ACAGAGGATCAGTCTTAAACataacaaatctcttttgacttTAGCTGATG
GAATCCCGCCGCCTGTTCCAGAAGTTACAAAACCTCCAACTTCAAAAGTT
ACAAGTGAGTCAATATCTGAATCTTAGAAGTAACCCAAAATATTAAACAG
AGGATCAGTCTTAAACataacaaatctcttttgacttTAGCTGATGGAAT
CCCGCCGCCTGTTCCAGAAGTTACAAAACCTCCAACTTCAAAAGTTACAA
GTGAGTCAATATCTGAATCTTAGAAGTAACCCAAAATATTAAACAGAGGA
TCAGTCTTAAACataacaaatctcttttgacttTAGCTGATGGAATCCCG
CCGCCTGTTCCAGAAGTTACAAAACCTCCAACTTCAAAAGTTACAAGTGA
GTCAATATCTGAATCTTAGAAGTAACCCAAAATATTAAACAGAGGATCAG
TCTTAAACataacaaatctcttttgacttTAGCTGATGGAATCCCGCCGC
CTGTTCCAGAAGTTACAAAACCTCCAACTTCAAAAGTTACAAGTGAGTCA
ATATCTGAATCTTAGAAGTAACCCAAAATATTAAACAGAGGATCAGTCTT
AAACataacaaatctcttttgacttTAGCTGATGGAATCCCGCCGCCTGT
TCCAGAAGTTACAAAACCTCCAACTTCAAAAGTTACAAGTGAGTCAATAT
CTGAATCTTAGAAGTAACCCAAAATATTAAACAGAGGATCAGTCTTAAAC
ataacaaatctcttttgacttTAGCTGATGGAATCCCGCCGCCTGTTCCA
GAAGTTACAAAACCTCCAACTTCAAAAGTTACAAGTGAGTCAATATCTGA
ATCTTAGAAGTAACCCAAAATATTAAACAGAGGATCAGTCTTAAACataa
caaatctcttttgacttTAGCTGATGGAATCCCGCCGCCTGTTCCAGAAG
TTACAAAACCTCCAACTTCAAAAGTTACAAGTGAGTCAATATCTGAATCT
TAGAAGTAACCCAAAATATTAAACAGAGGATCAGTCTTAAACataacaaa
tctcttttgacttTAGCTGATGGAATCCCGCCGCCTGTTCCAGAAGTTAC
AAAACCTCCAACTTCAAAAGTTACAAGTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007938XLOC_007938Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014178-exon-sc0000183-1491911889:28108..28345TCONS_00014178-exon-sc0000183-1491911889:28108..28345Clytia hemisphaericaexon
TCONS_00014178-exon-sc0000183-1510915933:28108..28345TCONS_00014178-exon-sc0000183-1510915933:28108..28345Clytia hemisphaericaexon
TCONS_00014178-exon-sc0000183-1575043694:28108..28345TCONS_00014178-exon-sc0000183-1575043694:28108..28345Clytia hemisphaericaexon
TCONS_00014178-exon-sc0000183-1491911889:28863..28985TCONS_00014178-exon-sc0000183-1491911889:28863..28985Clytia hemisphaericaexon
TCONS_00014178-exon-sc0000183-1510915933:28863..28985TCONS_00014178-exon-sc0000183-1510915933:28863..28985Clytia hemisphaericaexon
TCONS_00014178-exon-sc0000183-1575043694:28863..28985TCONS_00014178-exon-sc0000183-1575043694:28863..28985Clytia hemisphaericaexon
TCONS_00014178-exon-sc0000183-1491911889:29409..29525TCONS_00014178-exon-sc0000183-1491911889:29409..29525Clytia hemisphaericaexon
TCONS_00014178-exon-sc0000183-1510915933:29409..29525TCONS_00014178-exon-sc0000183-1510915933:29409..29525Clytia hemisphaericaexon
TCONS_00014178-exon-sc0000183-1575043694:29409..29525TCONS_00014178-exon-sc0000183-1575043694:29409..29525Clytia hemisphaericaexon
TCONS_00014178-exon-sc0000183-1491911889:29939..30070TCONS_00014178-exon-sc0000183-1491911889:29939..30070Clytia hemisphaericaexon
TCONS_00014178-exon-sc0000183-1510915933:29939..30070TCONS_00014178-exon-sc0000183-1510915933:29939..30070Clytia hemisphaericaexon
TCONS_00014178-exon-sc0000183-1575043694:29939..30070TCONS_00014178-exon-sc0000183-1575043694:29939..30070Clytia hemisphaericaexon
TCONS_00014178-exon-sc0000183-1491911889:30541..30624TCONS_00014178-exon-sc0000183-1491911889:30541..30624Clytia hemisphaericaexon
TCONS_00014178-exon-sc0000183-1510915933:30541..30624TCONS_00014178-exon-sc0000183-1510915933:30541..30624Clytia hemisphaericaexon
TCONS_00014178-exon-sc0000183-1575043694:30541..30624TCONS_00014178-exon-sc0000183-1575043694:30541..30624Clytia hemisphaericaexon
TCONS_00014178-exon-sc0000183-1491911889:30987..31043TCONS_00014178-exon-sc0000183-1491911889:30987..31043Clytia hemisphaericaexon
TCONS_00014178-exon-sc0000183-1510915933:30987..31043TCONS_00014178-exon-sc0000183-1510915933:30987..31043Clytia hemisphaericaexon
TCONS_00014178-exon-sc0000183-1575043694:30987..31043TCONS_00014178-exon-sc0000183-1575043694:30987..31043Clytia hemisphaericaexon
TCONS_00014178-exon-sc0000183-1491911889:31427..31486TCONS_00014178-exon-sc0000183-1491911889:31427..31486Clytia hemisphaericaexon
TCONS_00014178-exon-sc0000183-1510915933:31427..31486TCONS_00014178-exon-sc0000183-1510915933:31427..31486Clytia hemisphaericaexon
TCONS_00014178-exon-sc0000183-1575043694:31427..31486TCONS_00014178-exon-sc0000183-1575043694:31427..31486Clytia hemisphaericaexon
TCONS_00014178-exon-sc0000183-1491911889:33324..33388TCONS_00014178-exon-sc0000183-1491911889:33324..33388Clytia hemisphaericaexon
TCONS_00014178-exon-sc0000183-1510915933:33324..33388TCONS_00014178-exon-sc0000183-1510915933:33324..33388Clytia hemisphaericaexon
TCONS_00014178-exon-sc0000183-1575043694:33324..33388TCONS_00014178-exon-sc0000183-1575043694:33324..33388Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000183supercontigsc0000183:28108..33388 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0.107777	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0479692	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014178 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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