TCONS_00014168 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014168
Unique NameTCONS_00014168
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1330

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014168 ID=TCONS_00014168|Name=TCONS_00014168|organism=Clytia hemisphaerica|type=transcript|length=1330bp
GAATTTCTgacaaaaaacttcaaaacaaagtcaattGACGTGTGTGCCAG
CTGAGCGAGGACCAAAGAATTAGCGCGTCGGTCAGAATATTTCAGGCTAG
AAAAATGCACTTAGAGCTCTTTTCTAATTTTACCAGGGACTTCTTTTCGA
CTATTTAGAAttagaaataataaaaatgcGGTGTTGCCATATTTTGGGTG
TTTCGATTATTTTCATATTGAGTGTCGCTGCAGTAGGCCTACTGGTTGCT
AGTGGTGTGGCTTATGATGTGTTAATAGAGGATAGTGTAAATGGCACCTC
CAGTTCACGGGTAGGATTGTGGAGAAACTGTACAACAATGAATGGTATTG
AGATCTGTTCCGTTGATGATAATATTTTGGAATTTAAAAGTGAACCCAAC
ATGAGAAGAGATAAAGATATCTTGATCGTGATGGACATAGCAGCTGTTGC
AATCATTCTGATCGCCATCTTCCTCACACTCTGTGGTTTGGCTAAAAGTC
ATCGCTCAAAATGCGTCGAAATCACTGCATCACTCTTATTCATTTTAGCA
ACAATATGCATTCTGTTTATGGTTGTCTACTTAGAAGTTGAAATGATAAA
AGACTCTTCATTCAAGCGAGGTTGGGCTGTTTTCACTTTATACGGTGGTC
TAGCGGCAACACTCCTGACGTCTATCGAAGCTATAGTCTACGCTCTATGT
TGTTATGATCCTTACTTAGAAGGTATCGAGAAAAGTGACTCTTTAGTTTT
ACGGTCGAGACCACCAAATTTGGAATACAATAGATCATATAACAACAATG
CAATGGACACCTCTTATAACCCGTACGCAGTTCCAACCAAGGATTATTGA
ACTTCATCTAAAGAGCCGTTCTTATCGTTTGAAAGACTGGAATACTTTGT
CTTGGTGAATTATGGGAAGAGCATGGAAAAAAGTGTGTTGTATTACTTGA
ACATAGATCCCCTAACATTCAACAGTGGCGTTACATGAACGTTTTTTATC
TATTGTGTCACCTGTGATAGTCAATGGAGGAGCAATACAATAGAAATATG
ATGccagacatttaaaaaaatgaatgtTTCAAGAATCTATATTTCGCCAA
GCAGTCAGCAGGTGTAATTTACGCCTTCCAAATTAAGTTAAAAGTCTATG
GAGCCTTTGGAGTGAAAAGTCCAGCTCATTTGTTGATTATTTtatatgta
aaatatttttatatttattgtcCATAGCATTCTCTCACGTTTTCTAAACG
TGGAATATAATTTGGAAACCAAAAAAACCTTTCAACCCTAGAATCTATAA
ACGTGTTACTGGGATAAACCTGTATTTTAG
Run BLAST on NCBI

transcript from alignment at sc0000183:4036..7280+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014168 ID=TCONS_00014168|Name=TCONS_00014168|organism=Clytia hemisphaerica|type=transcript|length=3245bp|location=Sequence derived from alignment at sc0000183:4036..7280+ (Clytia hemisphaerica)
GAATTTCTgacaaaaaacttcaaaacaaagtcaattGACGTGTGTGCCAG
CTGAGCGAGGACCAAAGAATTAGCGCGTCGGTCAGAATATTTCAGGCTAG
AAAAATGCACTTAGAGCTCTTTTCTAATTTTACCAGGGACTTCTTTTCGA
CTATTTAGAAttagaaataataaaaatgcGGTGTTGCCATATTTTGGGTG
TTTCGATTATTTTCATATTGAGTGTCGCTGCAGTAGGCCTACTGGTTGCT
AGTGGTGTGGCTTATGATGTGTTAATAGAGGATAGTGTAAATGGCACCTC
CAGTTCACGGGTAGGATTGTGGAGAAACTGTACAACAATGAATGGTATTG
AGATCTGTTCCGTTGATGATAATATTTTGGAATTTAAAAGTGAACCCAAC
ATGAGAAGAGGTAGGTTAAGACTGTCCAACacttcaaaaagtttcaaaga
ttacacaatttttattactttgacccctaaattgcttgaaattgagtaac
tccaggctcagagaaagaagaagaagtgTACAGGGTTCTTgtcaaaaaat
ggtaaatttagTTGTTTTGCGGTTATTGTCACCACATCAATCTGAATACT
CGAGACAATAGTTTAGACTTCAAGAATAGAGATTGAAACCATTGTGGCAA
ATCTTCCTTTTGCATCTTTTCAACTCTATATATCCTCTTGACcattacac
ccctgtctaaCAGCCCCGATGGTAGCCCATGGTACTCAGTGGGacaaaaa
ttcctattgaaatctcaatggggatagaaattcaaTTGTTCTAAGGTTAA
TAAACCAAAGAGGATGGTTTTAGAGTtcaatttctaaacattgaatttcg
aatggggatgaaatcaaagcaaATTTCCCATCGGGggcgaaatttttgcc
aaattttccagtggtccaacacgggtctgtgacacagatgTGTACCGATG
AACCCCACTattaaagtgaaaaatattttcataaagaagaaaacgaagca
aCAGTCTGAAATACTGTGCTTTTTTATATTTCACATTTCCTTGACAGAAA
GCTTTCGACATATTTTCATCACAGTGTAAAAAACTATTTGTCATAAAACA
ATCAGATTTGATATAATctcttaatttttgttttgattgacatttAATTA
AGAAACTGTTGGACTTAATTGGATCTATCTCATTAGCACAAACCACAAAT
TGAGAAATCAATCCTGTCATATACTGAACTAACCTCTCTGacatgaaatt
aatttttataaaatcaaagTGTACGGACATTTAAATCCCTCTATTAAGCA
ATGTCTATGACGTATAAAGGGAAGGTTTCTTTTAGTGAAGGGGGCCCTCA
ACCCACGGAGAAAATCTACCGAAAGATGGAAATTTTCCTCTTGAAAACTG
CACATAATAAAANTTGTCATAAAACAATCAGATTTGATATAATctcttaa
tttttgttttgattgacatttAATTAAGAAACTGTTGGACTTAATTGGAT
CTATTTCATTAGCACAAACCACAAATTGAGAAATCAATCCTGTCATATAC
TGAACTATCCTCTCTGacatgaaattaatttttataaaatcaaagTGTAC
GGACATTTAAATCCCTCTACTAAGCAATGTCTATGACGTATAAAGGGAAG
GTTTCTTTTAGTGAAGGGGGCCCTCAACCCACGGAGAAAATCTACCGAAA
GATGGAAATTTTCCTCTTGAAAACTGCACATAATAAAACCTGGTGCAGAC
TGGGATTAACACTAACGTTTTGATTGATAATTTAAAAACCCcatttttgg
ctgttttttttcttcacatCAACGGGTCACCTTACTTCTAGAGTCTGTAA
CTTTTGCtgattgatatatttttttgtgaaaatatttcaatagttgaaat
ataaaaaagcttCAAAGTGCCTCtttaccaaaaatgaagttaatAGCATC
ATCatgtcatcttcattttcaaaaaaaatgagatCATGATAATTTGTTCT
TATCGGCACAAAGGCAATATCAAGGCTAAGTAGTGCGATTTTCATTTTCT
CCTACTGCGCAGTTGAAAAACTATTTTCCCTTTTTATTTCATTCAGATAA
AGATATCTTGATCGTGATGGACATAGCAGCTGTTGCAATCATTCTGATCG
CCATCTTCCTCACACTCTGTGGTTTGGCTAAAAGTCATCGCTCAAAATGC
GTCGAAATCACTGCATCACTCTTATTCATTTTAGCAAGTAAGTTCGACTG
GAACAATCGCATGTAACACTTACAATCACTCTTTTTGAACAACCCATTCT
CAGATATCAACCCTAGAGGGCTGCTTCAAATGTCCAATTAAATTGTATGC
CATTACAAAACATTATCATCACATATATTTCAAATACGTGAAATCCTGAA
GTAGCTTCGGTATTGTTCTTGAATTTTTGTtggatatttttgatttttct
tcttattcTATTTCAGCAATATGCATTCTGTTTATGGTTGTCTACTTAGA
AGTTGAAATGATAAAAGACTCTTCATTCAAGCGAGGTTGGGCTGTTTTCA
CTTTATACGGTGGTCTAGCGGCAACACTCCTGACGTCTATCGAAGCTATA
GTCTACGCTCTATGTTGTTATGATCCTTACTTAGAAGGTATCGAGAAAAG
TGACTCTTTAGTTTTACGGTCGAGACCACCAAATTTGGAATACAATAGAT
CATATAACAACAATGCAATGGACACCTCTTATAACCCGTACGCAGTTCCA
ACCAAGGATTATTGAACTTCATCTAAAGAGCCGTTCTTATCGTTTGAAAG
ACTGGAATACTTTGTCTTGGTGAATTATGGGAAGAGCATGGAAAAAAGTG
TGTTGTATTACTTGAACATAGATCCCCTAACATTCAACAGTGGCGTTACA
TGAACGTTTTTTATCTATTGTGTCACCTGTGATAGTCAATGGAGGAGCAA
TACAATAGAAATATGATGccagacatttaaaaaaatgaatgtTTCAAGAA
TCTATATTTCGCCAAGCAGTCAGCAGGTGTAATTTACGCCTTCCAAATTA
AGTTAAAAGTCTATGGAGCCTTTGGAGTGAAAAGTCCAGCTCATTTGTTG
ATTATTTtatatgtaaaatatttttatatttattgtcCATAGCATTCTCT
CACGTTTTCTAAACGTGGAATATAATTTGGAAACCAAAAAAACCTTTCAA
CCCTAGAATCTATAAACGTGTTACTGGGATAAACCTGTATTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007934XLOC_007934Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014168-exon-sc0000183-1491911889:4036..4445TCONS_00014168-exon-sc0000183-1491911889:4036..4445Clytia hemisphaericaexon
TCONS_00014168-exon-sc0000183-1510915933:4036..4445TCONS_00014168-exon-sc0000183-1510915933:4036..4445Clytia hemisphaericaexon
TCONS_00014168-exon-sc0000183-1575043694:4036..4445TCONS_00014168-exon-sc0000183-1575043694:4036..4445Clytia hemisphaericaexon
TCONS_00014168-exon-sc0000183-1491911889:6132..6272TCONS_00014168-exon-sc0000183-1491911889:6132..6272Clytia hemisphaericaexon
TCONS_00014168-exon-sc0000183-1510915933:6132..6272TCONS_00014168-exon-sc0000183-1510915933:6132..6272Clytia hemisphaericaexon
TCONS_00014168-exon-sc0000183-1575043694:6132..6272TCONS_00014168-exon-sc0000183-1575043694:6132..6272Clytia hemisphaericaexon
TCONS_00014168-exon-sc0000183-1491911889:6502..7280TCONS_00014168-exon-sc0000183-1491911889:6502..7280Clytia hemisphaericaexon
TCONS_00014168-exon-sc0000183-1510915933:6502..7280TCONS_00014168-exon-sc0000183-1510915933:6502..7280Clytia hemisphaericaexon
TCONS_00014168-exon-sc0000183-1575043694:6502..7280TCONS_00014168-exon-sc0000183-1575043694:6502..7280Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000183supercontigsc0000183:4036..7280 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.158241	0.0308621	0.0394328	0.105173	3.81477	2.92831	5.67946	5.52993	3.02871	3.89568	1.82097	2.00311	5.75036	4.0319	0.301844	0.380769	7.84593	8.59693	8.58647	9.88531	10.3626	8.50964	3.97958	5.42303	3.63147	1.97187	17.5164	10.8082	0.421577	0.701596
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014168 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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