TCONS_00014156 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014156
Unique NameTCONS_00014156
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length893

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014156 ID=TCONS_00014156|Name=TCONS_00014156|organism=Clytia hemisphaerica|type=transcript|length=893bp
CAAATCAGATTCAAAGAGACTTGCAAACAACAAAACTAAAGCAATGAAAT
ACCAACAGCTACTAAAGCTCAATCTACCAATGAAAGTCAAGGACAAACAA
GACATCTTGGGTTCTGAGTCGTAACTCCAAAGACTTGGGTACGTTGAGTT
ACCTAACCTAAGGAATCTTCCTGAAGCAACACAACAATATCTTCGTGACC
GAACCACTCAATACTACATCCCTTGGCGTGCTGTATGGAAAGGGAACTCA
GTGAGCACAACGTGCAGGGTGGTGTTTCTCAACCCACGTCATCAGGATAC
AGCTATGATCTCCTCGCCTCTCCTCCTCCTCTTTGCCAAAGGACAAAATA
ATCTCAACAAATTGCAAGAAATCGTCATTCGCTGGTTCACTCATCAAGTT
GCAATACACGCCGTACACATTAGTAAGATGTACAATACCATGAAACTCGA
AGAATCCAATTGGTGTTTCCAAAGATACATCTGGGAACCTAACCTTGACC
CAACAAAGCTTTCAGAAGAGAAGATCATCAAGACCCTGATTTATGGAGTT
TGTTTGTCAAGGAATCAAGCTGAACATGGACTTCGCAAGATCGCCGACCT
GTCACAATGACATGTACGTAGACGATTGCCTGTCTGGGAGAGGGGACGCA
CCCAAGCTCGACAATCTCGAATTCGTTCTCAGCAAAGGAAACTTTCGACT
CAAAGGTGTTTCGTTTTCTGGAGAAGAACCAAACGAAAGCCTCACGATGG
CGATGGAGAGACGATCCATGTAGCAGGTACAAAATGGTTTCCAAAGGACG
ACACGATCAGGTggtaaatcagaacataaaatataaagaactagactgtg
aaatagttttcTGACTGGATATCCAAGCTATATCAAAGTAATT
Run BLAST on NCBI

protein sequence of TCONS_00014156-protein

>TCONS_00014156-protein ID=TCONS_00014156-protein|Name=TCONS_00014156-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MISSPLLLLFAKGQNNLNKLQEIVIRWFTHQVAIHAVHISKMYNTMKLEE
SNWCFQRYIWEPNLDPTKLSEEKIIKTLIYGVCLSRNQAEHGLRKIADLS
Q
Run BLAST on NCBI

transcript from alignment at sc0000181:120487..121379

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014156 ID=TCONS_00014156|Name=TCONS_00014156|organism=Clytia hemisphaerica|type=transcript|length=893bp|location=Sequence derived from alignment at sc0000181:120487..121379 (Clytia hemisphaerica)
AATTACTTTGATATAGCTTGGATATCCAGTCAgaaaactatttcacagtc
tagttctttatattttatgttctgatttaccACCTGATCGTGTCGTCCTT
TGGAAACCATTTTGTACCTGCTACATGGATCGTCTCTCCATCGCCATCGT
GAGGCTTTCGTTTGGTTCTTCTCCAGAAAACGAAACACCTTTGAGTCGAA
AGTTTCCTTTGCTGAGAACGAATTCGAGATTGTCGAGCTTGGGTGCGTCC
CCTCTCCCAGACAGGCAATCGTCTACGTACATGTCATTGTGACAGGTCGG
CGATCTTGCGAAGTCCATGTTCAGCTTGATTCCTTGACAAACAAACTCCA
TAAATCAGGGTCTTGATGATCTTCTCTTCTGAAAGCTTTGTTGGGTCAAG
GTTAGGTTCCCAGATGTATCTTTGGAAACACCAATTGGATTCTTCGAGTT
TCATGGTATTGTACATCTTACTAATGTGTACGGCGTGTATTGCAACTTGA
TGAGTGAACCAGCGAATGACGATTTCTTGCAATTTGTTGAGATTATTTTG
TCCTTTGGCAAAGAGGAGGAGGAGAGGCGAGGAGATCATAGCTGTATCCT
GATGACGTGGGTTGAGAAACACCACCCTGCACGTTGTGCTCACTGAGTTC
CCTTTCCATACAGCACGCCAAGGGATGTAGTATTGAGTGGTTCGGTCACG
AAGATATTGTTGTGTTGCTTCAGGAAGATTCCTTAGGTTAGGTAACTCAA
CGTACCCAAGTCTTTGGAGTTACGACTCAGAACCCAAGATGTCTTGTTTG
TCCTTGACTTTCATTGGTAGATTGAGCTTTAGTAGCTGTTGGTATTTCAT
TGCTTTAGTTTTGTTGTTTGCAAGTCTCTTTGAATCTGATTTG

Coding sequence (CDS) from alignment at sc0000181:120487..121379

>TCONS_00014156 ID=TCONS_00014156|Name=TCONS_00014156|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at sc0000181:120487..121379 (Clytia hemisphaerica)
TCATTGTGACAGGTCGGCGATCTTGCGAAGTCCATGTTCAGCTTGATTCC
TTGACAAACAAACTCCATAAATCAGGGTCTTGATGATCTTCTCTTCTGAA
AGCTTTGTTGGGTCAAGGTTAGGTTCCCAGATGTATCTTTGGAAACACCA
ATTGGATTCTTCGAGTTTCATGGTATTGTACATCTTACTAATGTGTACGG
CGTGTATTGCAACTTGATGAGTGAACCAGCGAATGACGATTTCTTGCAAT
TTGTTGAGATTATTTTGTCCTTTGGCAAAGAGGAGGAGGAGAGGCGAGGA
GATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007922XLOC_007922Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014156-proteinTCONS_00014156-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014156-exon-sc0000181-1491911889:120487..121379TCONS_00014156-exon-sc0000181-1491911889:120487..121379Clytia hemisphaericaexon
TCONS_00014156-exon-sc0000181-1510915933:120487..121379TCONS_00014156-exon-sc0000181-1510915933:120487..121379Clytia hemisphaericaexon
TCONS_00014156-exon-sc0000181-1575043694:120487..121379TCONS_00014156-exon-sc0000181-1575043694:120487..121379Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000181supercontigsc0000181:120487..121379 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.17846	1.87144	0.646004	1.37894	0.629523	1.05019	1.06695	1.56073	0.786748	0.974514	0.630591	0.552701	0.586429	0.609012	0.6185	0.790173	0.700869	0.957824	1.0476	1.09624	0.50149	0.880593	0.356825	0.540677	1.00239	0.944311	0.284486	0.607221	0.345417	0.293271
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014156 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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