TCONS_00014152 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014152
Unique NameTCONS_00014152
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1934

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014152 ID=TCONS_00014152|Name=TCONS_00014152|organism=Clytia hemisphaerica|type=transcript|length=1934bp
NAAAAAAGGCTCTGGAAAATGCAGGATTGTCCTAATTATTTGGTCATCCG
TATTGGAAAATCCaagattttccttaaaaattctTGAATGTTAGGAAATC
CTGAAGTAATTGAAAAGTAAATTGTTACGGGAAATCCATGTTCTCCATAA
GAAGAATTtaaattgtaaacaaaatacTTGAGACGCGGGGGAAAAAAAGT
TAATACTTTAcgttgcaatcaaaacatttgaaaatttgacatttctgTTT
TAGGGTGTGACATTCTTTGACAATAAAATCTAATAACTTATCTGTGTACT
TTTAGGGTTAGCATTTAGaggtttttttaaaaaagcatttaaaaGATTAG
AACTAAGCACAGGTGAAATGGAAATTTAAGATCTACCATCAAGTTCACTA
TTAGGATTACTCTCGAGAAATAGAAAACCAGGTTTTCATGTCCTAGCTGA
CTGGCTTCATAGAACTAGAGCAAATTTATGTAGTCAAAGGAAAGAAACAG
ATTCAAAGATTTGATTTATTGTTTCAGGAATTTTAGGTTTCAACCAAGTT
CCATCAAGACCTGGAGGAATACCAACACAGCCGACACCAGTCAAAGATGC
TTCCAATGCTCCTCCCAATAAAATGTCACAACAGAAAGACAAAAAACCAT
TGTCTCCTACTCAAAAGAAGCCGgatcaaaagcttttttcctcaaatagA
AATCAACCAACTATTACAAATGGGCAAAGTAAACCTTCAACTCCACTGTC
AAACTCACCAAATAGTGCAgacatttcaaaattattaGAAAAAGTAGAGT
CAATGAAAAAATCCGAAATTTTAAGTCAACTACCTTCAAAAATAACTGAA
CTTTGTAAAAACAATAATGGAGCAAGCATAATgaatgattttacaaaaat
tatttgtgGGAAAGCAATTAAAGATCCCGAATTTGCCACCGTGGCAGCAC
AACTGTGTAATGCTTGCTGGATAAGAGAGCAACTAAACCCTCTGTTACGA
TCACCTTTGTTGTCAGCTATCCAAGCAGAATATAAAAAACGCAAAGAATT
AAACCGTGAACAATTTTATGGACTAACTGTTTTATTATGTGAGCTGTATA
ATGTTTTGAAGGTGCAGCATCAACCTCTGAAACCGTTAAATAACCCGGTT
TGTGATCTTTTAAAAGATTTGGTTAAAGAAGACCATGTTTCTGAAGATGA
tgcattTTATTTTTTCCAAGAAATGGAAAGAGTTGGTAGAGTCATTGAAA
GCGACAATAGGTCAAACATGGATGACATCATGACTCGTGTGCGTGAAATT
TGCATTTCGGATGATCAAATGCTTCCATCATCCAAATGTCGTTTTGTCCA
ACTGGTAGAATTGAGGGCTGCAAATTGGCAATTATCACAAGACACCACTG
CATTCTATGATGATCTAAGCCAGGACCTAATGGCAAAAGGacaataacaa
aattttcttgatctcacaaatattttttatcatgaAAAACCCATGCggat
ttatttacatttttattttatgtttatttatatCATATAATAATTACCCA
TTAcagtactttaaaaaatcaggaTCTTTTTTAAGCTACATTTGTTTTGG
AATATCTTCTTcgtatgaaaatttaaaaaacaaggaaaagaaTGTATAGA
TTCGATTTTTATGTGGGAAATTGTCCTagtaaaaataagattttattttt
caaaattgatccCTAATACCCTCATCTCCAAGCTCTATGCAGAAGGAGGG
AGTAATATATTTTTCCTTTGGTTTAAAGAAATTGCATATGCTTTTGTTAA
CTATCTTACTCCtatccaatatttttggtttctttttatatattttaata
attttaggTAACAATTTCTATAATGAGCGTATTGTTTATAAAGTATGTAA
TTTCTATTGATTAGAAAAAGTATTATCAATTAAT
Run BLAST on NCBI

protein sequence of TCONS_00014152-protein

>TCONS_00014152-protein ID=TCONS_00014152-protein|Name=TCONS_00014152-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
MSQQKDKKPLSPTQKKPDQKLFSSNRNQPTITNGQSKPSTPLSNSPNSAD
ISKLLEKVESMKKSEILSQLPSKITELCKNNNGASIMNDFTKIICGKAIK
DPEFATVAAQLCNACWIREQLNPLLRSPLLSAIQAEYKKRKELNREQFYG
LTVLLCELYNVLKVQHQPLKPLNNPVCDLLKDLVKEDHVSEDDAFYFFQE
MERVGRVIESDNRSNMDDIMTRVREICISDDQMLPSSKCRFVQLVELRAA
NWQLSQDTTAFYDDLSQDLMAKGQ
Run BLAST on NCBI

transcript from alignment at sc0000181:472966..475546-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014152 ID=TCONS_00014152|Name=TCONS_00014152|organism=Clytia hemisphaerica|type=transcript|length=2581bp|location=Sequence derived from alignment at sc0000181:472966..475546- (Clytia hemisphaerica)
NAAAAAAGGCTCTGGAAAATGCAGGATTGTCCTAATTATTTGGTCATCCG
TATTGGAAAATCCAAGATTTTCCTTAAAAATTCTTGAATGTTAGGAAATC
CTGAAGTAATTGAAAAGTAAATTGTTACGGGAAATCCATGTTCTCCATAA
GAAGAATTTAAATTGTAAACAAAATACTTGAGACGCGGGGGAAAAAAAGT
TAATACTTTACGTTGCAATCAAAACATTTGAAAATTTGACATTTCTGTTT
TAGGGTGTGACATTCTTTGACAATAAAATCTAATAACTTATCTGTGTACT
TTTAGGGTTAGCATTTAGAGGTTTTTTTAAAAAAGCATTTAAAAGATTAG
AACTAAGCACAGGTGAAATGGAAATTTAAGATCTACCATCAAGTTCACTA
TTAGGATTACTCTCGAGAAATAGAAAACCAGGTTTTCATGTCCTAGCTGA
CTGGCTTCATAGAACTAGAGCAAATTTATGTAGTCAAAGGAAAGAAACAG
ATTCAAAGATTTGATTTATTGTTTCAGGAATTTTAGGTTTCAACCAAGTT
CCATCAAGACCTGGAGGAATACCAACACAGCCGACACCAGTCAAAGATGC
TTCCAATGCTCCTCCCAATAAAATGTCACAACAGAAAGACAAAAAACCAT
TGTCTCCTACTCAAAAGAAGCCGGATCAAAAGCTTTTTTCCTCAAATAGA
AATCAACCAACTATTACAAATGGGCAAAGTAAACCTTCAACTCCACTGTC
AAACTCACCAAATAGTGCAGACATTTCAAAATTATTAGAAAAAGTAGAGT
CAATGAAAAAATCCGAAATTTTAAGTCAACTACCTTCAAAAATAACTGAA
CTTTGTAAAAACAATAATGGAGCAAGCATAATGAATGATTTTACAAAAAT
TATTTGTGGGAAAGCAATTAAAGATCCCGAATTTGCCACCGTGGCAGCAC
AACTGTGTAATGCTTGCTGGATAAGAGAGCAACTAAACCCTCTGTTACGA
TCACCTTTGTTGTCAGCTATCCAAGCAGAATATAAAAAACGCAAAGAATT
AAACCGTGAACAATTTTATGGACTAACTGTTTTATTATGTGAGCTGTATA
ATGTTTTGAAGGTGCAGCATCAACCTCTGAAACCGTTAAATAACCCGGTT
TGTGATCTTTTAAAAGATTTGGTTAAAGAAGACCATGTTTCTGAAGATGA
TGCATTTTATTTTTTCCAAGAAATGGAAAGAGTTGGTAGAGTCATTGAAA
GCGACAATAGGGTATGTAAAACTAAATAAACACAAAATTCATTCTAATGA
CGTTTTAGTACATTTTATCCTATTTTGCTAATCAGAATGATCTCCTTTCT
CCGGGGGATGTCAGACTATTGAATCTTATTATTGGCCATTGATATAATAA
CATATATACTTTTAACAAAGGCTTTAATCTTAAAATTAATTGTCAGTCGT
GCAAAATTACTCAAATCTGATTGGTTTAGAGGAGTGCGATTAATCGTTGA
TTGCACTATTACATGTTTTTTCACTCTACGGTGCAGGATACTTTGCCCCC
CATTCCTTTCTCTCCCACGCCCTGTATAGCAATACAGGGACTTCTTCAAT
ACAACAAAACAAAGAAACTTTGCATTACATAGATAGATTCTTTTTAAAAA
TTGCACTGCCACAGCTTCTTTTTAGATGAAAGAATAGAGAGATTTTTCGA
AACAAAAAACGTTGAGAATGTGCCTTTTTTCAATTGAAAACTATTATTTA
CAGAGGATTACTAATCAATCGTTTACAAAGAGGAATTTAACTTTTTTGTA
TTCTAATTTTTAAAGATTTATTTTTCATAGGTCCACTTTTTAGAAAAATA
TTTATCCTTTCTACTCTAGTGGGTATAGTTAACAAATGTTTCTCTACTTT
TTCGTTAGTCAAACATGGATGACATCATGACTCGTGTGCGTGAAATTTGC
ATTTCGGATGATCAAATGCTTCCATCATCCAAATGTCGTTTTGTCCAACT
GGTAGAATTGAGGGCTGCAAATTGGCAATTATCACAAGACACCACTGCAT
TCTATGATGATCTAAGCCAGGACCTAATGGCAAAAGGACAATAACAAAAT
TTTCTTGATCTCACAAATATTTTTTATCATGAAAAACCCATGCGGATTTA
TTTACATTTTTATTTTATGTTTATTTATATCATATAATAATTACCCATTA
CAGTACTTTAAAAAATCAGGATCTTTTTTAAGCTACATTTGTTTTGGAAT
ATCTTCTTCGTATGAAAATTTAAAAAACAAGGAAAAGAATGTATAGATTC
GATTTTTATGTGGGAAATTGTCCTAGTAAAAATAAGATTTTATTTTTCAA
AATTGATCCCTAATACCCTCATCTCCAAGCTCTATGCAGAAGGAGGGAGT
AATATATTTTTCCTTTGGTTTAAAGAAATTGCATATGCTTTTGTTAACTA
TCTTACTCCTATCCAATATTTTTGGTTTCTTTTTATATATTTTAATAATT
TTAGGTAACAATTTCTATAATGAGCGTATTGTTTATAAAGTATGTAATTT
CTATTGATTAGAAAAAGTATTATCAATTAAT

Coding sequence (CDS) from alignment at sc0000181:472966..475546-

>TCONS_00014152 ID=TCONS_00014152|Name=TCONS_00014152|organism=Clytia hemisphaerica|type=CDS|length=1650bp|location=Sequence derived from alignment at sc0000181:472966..475546- (Clytia hemisphaerica)
TCAAACATGGATGACATCATGACTCGTGTGCGTGAAATTTGCATTTCGGA
TGATCAAATGCTTCCATCATCCAAATGTCGTTTTGTCCAACTGGTAGAAT
TGAGGGCTGCAAATTGGCAATTATCACAAGACACCACTGCATTCTATGAT
GATCTAAGCCAGGACCTAATGGCAAAAGGACAATAAATGTCACAACAGAA
AGACAAAAAACCATTGTCTCCTACTCAAAAGAAGCCGGATCAAAAGCTTT
TTTCCTCAAATAGAAATCAACCAACTATTACAAATGGGCAAAGTAAACCT
TCAACTCCACTGTCAAACTCACCAAATAGTGCAGACATTTCAAAATTATT
AGAAAAAGTAGAGTCAATGAAAAAATCCGAAATTTTAAGTCAACTACCTT
CAAAAATAACTGAACTTTGTAAAAACAATAATGGAGCAAGCATAATGAAT
GATTTTACAAAAATTATTTGTGGGAAAGCAATTAAAGATCCCGAATTTGC
CACCGTGGCAGCACAACTGTGTAATGCTTGCTGGATAAGAGAGCAACTAA
ACCCTCTGTTACGATCACCTTTGTTGTCAGCTATCCAAGCAGAATATAAA
AAACGCAAAGAATTAAACCGTGAACAATTTTATGGACTAACTGTTTTATT
ATGTGAGCTGTATAATGTTTTGAAGGTGCAGCATCAACCTCTGAAACCGT
TAAATAACCCGGTTTGTGATCTTTTAAAAGATTTGGTTAAAGAAGACCAT
GTTTCTGAAGATGATGCATTTTATTTTTTCCAAGAAATGGAAAGAGTTGG
TAGAGTCATTGAAAGCGACAATAGGTCAAACATGGATGACATCATGACTC
GTGTGCGTGAAATTTGCATTTCGGATGATCAAATGCTTCCATCATCCAAA
TGTCGTTTTGTCCAACTGGTAGAATTGAGGGCTGCAAATTGGCAATTATC
ACAAGACACCACTGCATTCTATGATGATCTAAGCCAGGACCTAATGGCAA
AAGGACAATAAATGTCACAACAGAAAGACAAAAAACCATTGTCTCCTACT
CAAAAGAAGCCGGATCAAAAGCTTTTTTCCTCAAATAGAAATCAACCAAC
TATTACAAATGGGCAAAGTAAACCTTCAACTCCACTGTCAAACTCACCAA
ATAGTGCAGACATTTCAAAATTATTAGAAAAAGTAGAGTCAATGAAAAAA
TCCGAAATTTTAAGTCAACTACCTTCAAAAATAACTGAACTTTGTAAAAA
CAATAATGGAGCAAGCATAATGAATGATTTTACAAAAATTATTTGTGGGA
AAGCAATTAAAGATCCCGAATTTGCCACCGTGGCAGCACAACTGTGTAAT
GCTTGCTGGATAAGAGAGCAACTAAACCCTCTGTTACGATCACCTTTGTT
GTCAGCTATCCAAGCAGAATATAAAAAACGCAAAGAATTAAACCGTGAAC
AATTTTATGGACTAACTGTTTTATTATGTGAGCTGTATAATGTTTTGAAG
GTGCAGCATCAACCTCTGAAACCGTTAAATAACCCGGTTTGTGATCTTTT
AAAAGATTTGGTTAAAGAAGACCATGTTTCTGAAGATGATGCATTTTATT
TTTTCCAAGAAATGGAAAGAGTTGGTAGAGTCATTGAAAGCGACAATAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007918XLOC_007918Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014152-proteinTCONS_00014152-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014152-exon-sc0000181-1575043694:474286..475546TCONS_00014152-exon-sc0000181-1575043694:474286..475546Clytia hemisphaericaexon
TCONS_00014152-exon-sc0000181-1575043694:472966..473638TCONS_00014152-exon-sc0000181-1575043694:472966..473638Clytia hemisphaericaexon
TCONS_00014152-exon-sc0000181-1510915933:474286..475546TCONS_00014152-exon-sc0000181-1510915933:474286..475546Clytia hemisphaericaexon
TCONS_00014152-exon-sc0000181-1510915933:472966..473638TCONS_00014152-exon-sc0000181-1510915933:472966..473638Clytia hemisphaericaexon
TCONS_00014152-exon-sc0000181-1491911889:474286..475546TCONS_00014152-exon-sc0000181-1491911889:474286..475546Clytia hemisphaericaexon
TCONS_00014152-exon-sc0000181-1491911889:472966..473638TCONS_00014152-exon-sc0000181-1491911889:472966..473638Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000181supercontigsc0000181:472966..475546 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.8798	10.5694	2.60812	1.38973	57.1074	42.2997	32.8673	36.5872	24.7144	22.7771	20.8578	24.08	17.5083	19.7735	15.9762	16.7188	23.3135	21.8542	12.7461	11.8966	20.5016	20.6013	41.244	35.846	26.4318	24.2795	16.4977	11.4971	23.9461	28.4209
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003890MIF4G-like_typ-3
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003723RNA binding
GO:0005488binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding
Blast
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BLAST of TCONS_00014152 vs. Swiss-Prot (Human)
Match: CTIF (CBP80/20-dependent translation initiation factor OS=Homo sapiens GN=CTIF PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.322e-17
Identity = 59/238 (24.79%), Postives = 120/238 (50.42%), Query Frame = 2 
Query:  749 SNSPNSADISKLLEKVESMK--KSEILSQLPSKITELCKNNNGASIMNDFTKIICGKAIKDPEFATVAAQLCNACWIREQLNPLLRSPLLSAIQAEYKKRKELNR---EQFYGLTVLLCELYNVLKVQ-HQPLKPLNNPVCDLLKDLVKEDHVSEDDAFYFFQEMERVGRVIESDNRSNMDDIMTRVRE--ICISDDQMLPSSKCRFVQLVELRAANWQ-LSQDTTAFYDDLSQDLMA 1435
            + +P    + KL+E + SM+   S++ ++L + + E   + N   ++ +  + I  KA+ D  FA  AA+LC+   +        RS LL+ +Q ++  R+EL +   E++ G    LCE++  ++    +P + L  P+   L++L++   V ED       E++  GR++E      M +++   R+  +C S+  +   ++   ++++EL A +W  L+   T +Y+   Q L A
Sbjct:  364 TTTPQQNKMDKLIEILNSMRNNSSDVDTKLTTFMEEAQNSTNSEEMLGEIVRTIYQKAVSDRSFAFTAAKLCDKMALFMVEGTKFRSLLLNMLQKDFTVREELQQQDVERWLGFITFLCEVFGTMRSSTGEPFRVLVCPIYTCLRELLQSQDVKEDAVLCCSMELQSTGRLLEEQLPEMMTELLASARDKMLCPSESML---TRSLLLEVIELHANSWNPLTPPITQYYNRTIQKLTA 598
The following BLAST results are available for this feature:
BLAST of TCONS_00014152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTIF3.322e-1724.79CBP80/20-dependent translation initiation factor O... [more]
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