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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014151 ID=TCONS_00014151|Name=TCONS_00014151|organism=Clytia hemisphaerica|type=transcript|length=1747bpRun BLAST on NCBI protein sequence of TCONS_00014151-protein >TCONS_00014151-protein ID=TCONS_00014151-protein|Name=TCONS_00014151-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp MSNVKVDSVQVLRGEYEWLLAEEVPSMTKQLKSFIQACLQKVNILSSPAHRun BLAST on NCBI transcript from alignment at sc0000181:456841..472726- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014151 ID=TCONS_00014151|Name=TCONS_00014151|organism=Clytia hemisphaerica|type=transcript|length=15886bp|location=Sequence derived from alignment at sc0000181:456841..472726- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000181:456841..472726- >TCONS_00014151 ID=TCONS_00014151|Name=TCONS_00014151|organism=Clytia hemisphaerica|type=CDS|length=10260bp|location=Sequence derived from alignment at sc0000181:456841..472726- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00014151 vs. Swiss-Prot (Human)
Match: ROGDI (Protein rogdi homolog OS=Homo sapiens GN=ROGDI PE=1 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 8.796e-36 Identity = 79/253 (31.23%), Postives = 139/253 (54.94%), Query Frame = 3
Query: 147 VLRGEYEWLLAEEVPSMTKQLKSFI-QACLQKVNILSSPAHTIKGNNFLLSLPNSDAVKGLINVAGDSVIKAELKFKFPKYASNGIGTFIF-EQCPWKLQQLQDTSNHLKMAFEELKEQEYNSSLLEKQRVNQLLDQIMMSLSCAKNSLLVPQKQSMSQIMGSNCQKVLNPPIPEEILVNFHVNCDKLVFDVFLLNVLTTN-TPNQKYVND--LSAVGSMFEFEGRWFEIANKYEIICTVPWLKDMIVWINTA 890
VL E+ WLL +EV ++ KQL+ + +A L+ S K NF+L +D VKG++ + GD++ +A++ K P+ +N + F F E WKLQQ+QD NH+ A L ++ + V +L+D +M+ L+ A+N L P ++ +I S ++ P +P ++LVN ++N +KL V+ L+ L N T N + L + G+MFE+ + E+++ +++ C +PWL D +V+ +
Sbjct: 14 VLEEEFRWLLHDEVHAVLKQLQDILKEASLRFTLPGSGTEGPAKQENFILGSCGTDQVKGVLTLQGDALSQADVNLKMPR--NNQLLHFAFREDKQWKLQQIQDARNHVSQAIYLLTSRDQSYQFKTGAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASGLTRMFAPALPSDLLVNVYINLNKLCLTVYQLHALQPNSTKNFRPAGGAVLHSPGAMFEWGSQRLEVSHVHKVECVIPWLNDALVYFTVS 264 The following BLAST results are available for this feature:
BLAST of TCONS_00014151 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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