TCONS_00014115 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00014115
Unique Name	TCONS_00014115
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2972

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000181:378444..392311+

transcript sequence

>TCONS_00014115 ID=TCONS_00014115|Name=TCONS_00014115|organism=Clytia hemisphaerica|type=transcript|length=2972bp
tttgaaaacaaattaattttgaaGGATGGAAGAAAATAAGAAAGTCAGCA
ATGAAGAActtgcaaaaactttcaaattttgtttgttgAATATACCAAGT
GCATCCCTCAATACAAGGAAAGATGTGATCAATCAACTGTCACACTTGGT
AGAAAATGGAGGCATTAGTGATGCACACCTTAAAGGAATCGCAAAGATTT
TGGTACTGACTCTTCACCGTTACAGagACAAAAAGTCCAGACTTCTGGTT
GTTAATTTTTTACAGAAAACTTTGATCAAACTCCATGGTTCAACGGCTGC
TTTGGCTCTTCTAAATGAAACAAACTCAGTACTGGATAAGTTGCAAGGAG
GAGAATACGGAAGtcATGCCAATGCATCCCTGGCTTTGTTTGTNttttaa
aactgttttttctatttttgtagtCATGCCAATGCGTCCCTGGCTTTGTT
TGCATTATGGTGGTGTAGAATCATAGCTGAAGCTATCAAAGATATTTCTT
CACAAACAGACTTGTTCaaacaaattgtaaaatgtGAAGTTTTGGCGTAC
AGTTTAGTTGCCAAATACAAACCAAAAAGTGGAAGGGAGACTTATATCAG
GAAGGCTCATCTTTTCCTTGTTACACCAAAGaaCACAAATCATCTTGAGA
AATATCTGGAAACTTTGATCAAAGAAGAGTCGTTGCATATGAACGGATTG
TGTATTGTGGGATTCATTTACAGAAACTTGTTGGCAAACAATAATGTTGA
TGTTGTGGAGAAAGCAAAAAAGAAAATTGTTATtgacattttcatcaaaa
ttgcaaTACAAACTAAAGTCAAAGCCTTGCCACATTCATTAAGCGCCTtc
aaaccatttttgaagtcactTGCCCATGAAGAATTCACAGAGATATTGCC
CATTATTCAGAAGTCTCTTTTGAGAAATCCCGAAACTATTCTTGAAGcCG
TTGGATACACCTTTCAAGGGCTTTCAATCGACCCATCAAAATACatggaa
gaaatttcaaaatttttgcctgCTCATCTTGCATCCAAGAGTGAAAATCT
CAGATCAGCAACTATAACAGCACTAGGCAATTTATCCAACCAATGCAGTG
ATGTTTCTGCTATTGAAATGCTTGTCAATCAACTTTTCAAAGTGTTGAAT
GGTTCTGAGGGTAAGCTTGCTATGCCAGAACAACGTGGAGATGTTCTTAA
AGCGATTGAGCAAGTTTCAAATACTGCTGTCAGTGGTAAAGCACAACTAG
AAGAATTAGCTACAAATGCTGTAAAAGAACTTTTACCATATCTCCTACAA
GAAGGAAATGAAGGAGCGTTACTTCAAGGGCTGTCAACACTCAAAACGTG
GTCGACATACTTTACCACAAACttaccaaaagattttttctcgcAGATCC
AGAAAGCCATTTCAGCAAAAGGATGCAGCACTGTCGTTAGAACTCATTAC
ATTATTGCTTGCAATGAGGCTTTGAAAGGAAACACGCTGATCCAAGGGAC
AGAATTCTTGCAAACCCTGACACAGTTGATTGATAAATGCAAAGCACAAG
CCCATCAAACACCAActgtttttgaagccttagtgGAATCTGTAATGGTT
GCTCGCATTGCTACCTTGGATGATGTATCAGaaAGCAAAGTTGAAGCTTT
TTGGAATCATGTTTTGGATGGCAAGAAGAGATTCcttattccagaaaaaa
tattGGCTAACCCATCAAAAGAGTATCTTTTCCAACTTGCAAGCTTTGTC
AATTTGCTCTTCACCAGTTTCTATGAGAAAGCTTTGGCTGCTGGTACTGA
acCTTGGTACGAAGCTTTGGTTGTTATCTTACTGCATGGTGATGTCAACA
GCCAAAAGATAGTAAAGAACCTGATCAAGAAGCTTATGGAAAGTGAAGAT
GTGGACAACCTTCAACTCATGACATCCATTGTTGATGAACTTGATAAAGC
TGTCCGAAAGATTAAACCCTCAAAAGACGATGAAAAACCGTTCCCATTGA
AAACGTTTGGTAGCTGTTACACCTTCTTAGCGTCATGTGCTGGTGAAAAT
AGAGAAGAATTATTATCTCTTTGTTTGTTCAAAGTTCACCATCCACTTCT
GGCTGCTGAAGATCCAAGCTTGTTCACGAAAATGATCCGTATTATGCAAC
TGGATGCTGGTCAATTTGTTGTCAATAACAAAGATCAAATCATCAATTCA
CTTATGGAGATTGAAAGCTTTGAAGAGATGCATGTTCACACTATCAAGAA
TTTGTTGAAGTTTTCACCAGAAAGTATGGTCACACCATGTATGACCATGA
TCAAAGAGAACTTCCAGAAGCCAGCTCTAACGATGGTCACTGNGTTTTCA
CCAGAAAGTATGGTCACACCATGTATGACCATGATCAAAGAGAACTTCCA
GAAACCAGCTCTAACGATGGTCACTCAACAAGAGTATAATATTATGTTGA
CACCTGATGGCGAAGCTTACGACCAAAGTGTTTACGAAAGCGCAAAAGCA
AATGCTTCATCAGCGTCCAATCAGAAGAAAGAATCGAAAGCTTATTCCTT
CaaagaacaaaaaattgaaatggaaCTCAGAGAGgagttgaagaagaaga
aacctCAACCagagaaaaagattgaattgaataaaaaacaaaaagaacaa
tTACAAGCCATCTTAACTGAAGAAAAGAACATTCGGGATAATCTCAAATC
TTTGGAAAAAGCATTCGTGAAGCATGCAATCCTCCTGGATTGTTGTTTGA
ACGTCGaatcaaaacacttgaaatatCATTACCTTCGAATCATGAGCCTT
TGCTTGACTCTCTCAAAATCTTACCTGACTGCACAGCACGCTGTTCGATG
TTACATCAAGATCTCACAATGTGTCTTCGGTGGAGAATTCAAGTACTTAG
GTGAATTGATTGCAAACGTTATCCTACGCCATCGTCAAGCCGCCTGTCAA
CTCCCCCGAGCCTGGCAAGAAN

Run BLAST on NCBI

transcript from alignment at sc0000181:378444..392311+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00014115 ID=TCONS_00014115|Name=TCONS_00014115|organism=Clytia hemisphaerica|type=transcript|length=13868bp|location=Sequence derived from alignment at sc0000181:378444..392311+ (Clytia hemisphaerica)
tttgaaaacaaattaattttgaaGGATGGAAGAAAATAAGAAAGTCAGCA
ATGAAGAActtgcaaaaactttcaaattttgtttgttgAATATACCAAGT
GCATCCCTCAATACAAGGAAAGATGTGATCAATCAACTGTCACACTTGGT
AGAAAATGGAGGTACAACCTTATTTtacaaaaacagtaaaaaattCTCTA
TTCAGGGCAAGTGAAATGGCATTTTTTCAGGGTTTTTAAAGATGAAAGAG
ACTTTAAAAAGACAAATCCAATAATTTTATTCTCTGGCCAGTTAATTAAT
TAAGGCAAGAGAAGAGATCAGTAGATTTGTTTACCCAAAAATTACTTCCT
GCTAAAATATTCTTGTCTTCTTTTAGGCATTAGTGATGCACACCTTAAAG
GAATCGCAAAGATTTTGGTACTGACTCTTCACCGTTACAGGTAATTTTGA
CGATTATTaaagttttgtttacatttgggtaattttgaaatgaaaatgga
aGAGTTAAAAAGGGAAAAGCTTAAGATAAAAAAGAGACATTCATAATAGT
Ctttgatttgaataaaaaaattttctttataaaatgacaaaacaattttt
tgggtcggcaggtttcaAGGTAGGGTCAGTCTGACAGCAAACcaacattt
tcaaattctagCCTAATATTCGTTTGATACTTTTataaacttttcaaact
ttattttcaaaaataatttttatcaagtatctataatttcaatattttta
gagACAAAAAGTCCAGACTTCTGGTTGTTAATTTTTTACAGAAAACTTTG
ATCAAACTCCATGGTTAGTTTATGTTTATATTCATTTGATCATATTCAGA
ATTTAAATATTAACACATCTTCTGCTGACACATTTTCAGCAATAGACATA
ATTGTTAGATGTTTTGCTTCTAACCTCCAAATAAAGACAATATTATACGC
TTCAATAGACTTTAGCATTTCTTGGCCCAGAGCgggatttttaaaagttc
tcttttcaattttttctgcaaaattaTTTTGCTGATGATTATTTATTGTA
AGTTTTTTGAACAGAGTTTTGTATCTGCAACTTCTTTCTCTAGGTTCAAC
GGCTGCTTTGGCTCTTCTAAATGAAACAAACTCAGTACTGGATAAGTTGC
AAGGAGGAGAATACGGAAGGTATGATAGAAAATTTCCTGCAAAACAGCTA
TGAATTTCATAGGCTTATTACTTCAGCTTAATACAGATGAGCTATTCTTT
CAAtcttaatttctttattttgaagtatgaaaagcaacaaaaagacgaaa
ctgaaaaagtgaaatttatgTATTTTCGTTAAACCCACAGGTCTATAAAA
GgatatattttaaatttgaaaattgcctCAAATGGGCGCCCCACTGCACC
TTTTTTTTGAGGAAATAAGATAACATAATAATAACattaaaatttggtaa
aatgtCACCATGTATTGTTTCTAATTCCCAAGGCAATATTTTGatctcaa
aactttttttttatttttgtagtcATGCCAATGCATCCCTGGCTTTGTTT
GTNttttaaaactgttttttctatttttgtagtCATGCCAATGCGTCCCT
GGCTTTGTTTGCATTATGGTGGTGTAGAATCATAGCTGAAGCTATCAAAG
ATATTTCTTCACAAACAGACTTGTTCaaacaaattgtaaaatgtGAAGTT
TTGGCGTACAGTTTAGTTGCCAAATACAAACCAAAAAGTGGAAGGGAGAC
TTATATCAGGAAGGCTCATCTTTTCCTTGTTACACCAAAGGTTTGATTTG
CTTTGCTGTTTTTTTGCAACTTTCTTTCATCAATTTATTTGTTTACTATG
GGAAATACCTTTTTCTCTTTTGACTGttgttttcattgtttttctttgtt
tgtttttgtttcagaaCACAAATCATCTTGAGAAATATCTGGAAACTTTG
ATCAAAGAAGAGTCGTTGCATGTGAGTTGGTCTGGTTTTAATCTTATGTT
GTTCATTTTTAAACAACAACTGTCTGAGTTACCATTCTGTACTGGCCGTA
GATGCTTTGAAAGTATACTTTAAAAGTGGGTAAACTTTCATGTGGATCTT
TTTTGCAAATTGAGTGAGAATCTAAAATGTTCACTTTGATTAAAGTTGGC
CATTCAGCCAAAATTTCGAGTTTTTTGCAAGgcttatttttataaaattg
gccaaaatttgcaaaGATTAAGGTAGGTGTTTCACATTTGAGAAAGTTTT
GGANTGCAAggcttatttttacaaaattggccaaaatttgcaaaaattaa
gGTAAGTGTTTCACAtttgagaaaaacaaaacattttcattatAGATGAA
CGGATTGTGTATTGTGGGATTCATTTACAGAAACTTGTTGGCAAACAATA
ATGTTGATGTTGTGGAGAAAGCAAAAAAGGTATAAAGGCATTCTTGCTAC
ATACAATTTACGTTACTTTTTACTCACTTATTTACTTACTGCTATGTTAT
TCTTTAAAGCAAACagacaatgataaaattttgaaaaaatgactgTTATG
TAATAATTGTATCTTTCAGAAAATTGTTATtgacattttcatcaaaattg
caaTACAAACTAAAGTCAAAGCCTTGCCACATTCATTAGTAAGTATTACA
ATCCCCTTTAGAAAGAAAATAGTCAAGATATACAATTTAAACTTGAAGCA
TTGTATCATCTCTATCCAGATTCACAATCGTTAAAacaattttattgctt
ttaaaaactttgttaATTAACTGTGAGGCTAAAATTTGACAGTTGATTTT
CAACTTAAGCTTTTCTGTTTATCTTAATTAATCTTTCATAAATTTTAGAG
CGCCTtcaaaccatttttgaagtcactTGCCCATGAAGAATTCACAGAGA
TATTGCCCATTATTCAGAAGTCTCTTTTGAGAAATCCCGAAACTATTCTT
GAAGGTGAATCATGATTTCTTTACATTCTTAGTACTACAACATTTCTGTT
ACAAAACTTGTCGGCGACACTGcttttaaaaccttttttctttTCACAGA
CCTTGAAACCCTCCCTTTTCCCTTAATTCCAGgaggaaattaaaaaataa
aaggaatTAATTCATCAGTACGCTGAGCTCAGTACTATGCATGTTTATGA
TTGGGTTTGATTCTCTGATTTGATTTTCTTATCAAGGGTAAATTAATTCC
TAAACTAgcaagtttaattttttttcctttaagcCGTTGGATACACCTTT
CAAGGGCTTTCAATCGACCCATCAAAATACatggaagaaatttcaaaatt
tttgcctgGTAAGTTGACCCTAATCAGCTCAGCTTTGATCTCACAGTAGA
TTGTGTAGCTATAAGCTAAGGGGCCAGAATGATAAAGTGCTGTATgactt
attttgaaaatcaaacacAAAGTTTGAACCTCCTTCATTAAACACCATCT
TTAAAAACATTGGATTTGATTCTTCCCTGAAATGCCATtgttgggggggg
ggttaaacaCTGGGTATTTGAAAGACTTGTCTACCAATAGTCTGTCAATA
TCAAGTATTTCATCATTATGTTCAAAATGGATTTTGTTAATAAGGGATAA
ACTCCTCCATGTTTCAGCTCATCTTGCATCCAAGAGTGAAAATCTCAGAT
CAGCAACTATAACAGCACTAGGCAATTTATCCAACCAATGCAGTGATGTT
TCTGCTATTGAAATGCTTGTCAATCAACTTTTCAAAGTGTTGAATGGTAT
GttggtttggtttggtttggtttttaTAAGGTCCCTTTAAACTTACAGGA
CAGGGAATTGTCTTTatcttttcttgaatttttcttttaaagctTAGATA
AGAACGCCTAAATAACTATTTAATTTCAGTTACAGAACATGTGCCCTGCC
TTCTGATTTTAAATGTAAATAGATATAGGTGTTTCATCTACTACAAAATA
GGTCCTCGAACTCCAATTTTAAACTAGTTTTAACCTTTTTTATGATAGAT
ATTATGGAGATAGTCCTTGTATTTNGGTCCTCAAACTCCAATTTTAAACC
AGTTTTAACCTTTTAGATATTATGGAGTTAGTCCTTGTATTaactgaatt
ttattattatgTTCCAAATAAAGTTATTTATTGTTTTCAGGTTCTGAGGG
TAAGCTTGCTATGCCAGAACAACGTGGAGATGTTCTTAAAGGTAACTACA
TTTTAATTGGTCCAAATTATGGCACCTTCTTTTTACACTTTCCAAATAAG
CCCTCTACAGCTAGCCTTAAATTTTCTGTAATCGTATTGTGACTCGCTAT
GGTATGCTCATAGATGTATGGTCAGATGTCTTCATAATATTGTATAGTTA
ATCCAGATCCTCTATGGGCGATGGCTTTGATAGATTTATGTTAAAAATGG
AGCATAAGTGAGCACGACATAATggagtaatattttgaaaatcattttag
CGATTGAGCAAGTTTCAAATACTGCTGTCAGTGGTAAAGCACAACTAGAA
GAATTAGCTACAAATGCTGTAAAAGAACTTTTACCATATCTCCTACAAGA
AGGTGAGCAAATTTGATAAAATGCAGCCTAGAAATTGTCTTTGTTGATAC
TTTGTGAATATGAACCAAGCAATTTTTACTAGCATTTAAACCTGTTACCA
CCTTTGCTTGGTTTTTTAGGAAATGAAGGAGCGTTACTTCAAGGGCTGTC
AACACTCAAAACGTGGTCGACATACTTTACCACAAACttaccaaaagatt
ttttctcgcAGATCCAGGTTTGTTTGTTTGGCTTGTAAAACTTCGTTAGA
ACAGATGAGATTTTTGAAGTGATAAAATAATCTCTGTGCGAAAAAGACAt
tactgatgttgtttttaacataatttcatgcaaaaaattcattttagatt
atctttttatttaaatatgcATTAAAATAAACATTATGAAGAAATTTAGT
TATAATTAATATGTAAGGTTACTTTCTGCTTTTCTTTTTAGAAAGCCATT
TCAGCAAAAGGATGCAGCACTGTCGTTAGAACTCATTACATTATTGCTTG
CAATGAGGCTTTGAAAGGTATCTTTTCAAAAGGAAGAGATTTTTGCGGGA
ATTTTATTTGGTGGAcagtcaaaaatctttttcggaGGGAATTAATATGA
CAGGAATAATAGCAGTTGAAGGAATTTCTTGCtgaaaaatctttattaaa
aagCAACAAGCACTGCTTTAAGTCCTGAAAAAGCATGAATTTTAAAAATA
CCTTAATGCCCTTAATTTTCGCGCGCCTTTTATTTTCGAAACCCTTTAAT
TTTTGcgcctttaattttcgcgcagcTCGTAAAATAGATTATTCGCGCAT
CCTTTAATTTTTGCGCATCTTGCAATTTCTGGGATATTTTTTGAGGGTTT
TTGACGATTTAAAGTGAGTTTTACTCACTTTGAGTGTTTATTCAAGCTAA
ATTTACATCTCAGAGGCATATTTTATCATGAATCTAGGTcccattttatt
aaaagatCCCTAAGATGAGATTTCTACACGTTCAGAACGATCACTAATTT
GCGCACCTTTTATTTTCACATGGCCTAGCGCGCGAAATTAGGTCTTTTTC
ACGCACCCTTTAATTTCCGCGCAGTGGTAGTGCGCAAAAATTAAGGGCGC
GCAAAAATTAAGGGCATTAAGGTACatgaaagaaattaattttggcaGAA
ATTTATTTTAGAGGAggggaaaaaaataaagttttgagggaacTTAATTA
TCGAGGCTTGTAATATCATGAAATCTATGTTTGGCTAtgttacaagatat
ttttacaatattttgttAATTATGGGTATCAAAAGTTAATCAAATAGTGG
AGAAAACATCCTCCTCCTTGCCTGATGATGGTAGTAGAATTTCTCAAAAC
GTAGCCAAACATAAATCTTGTGATCTGAGCCACGATCAATTTTTAATATT
ATATTAAATctaattgaatttcttttttatcgCTTTTATTCAGGAAACAC
GCTGATCCAAGGGACAGAATTCTTGCAAACCCTGACACAGGTATGACACT
TGCACTACACTTGTACCGTAAACCATTTCAAACTATCATGAGATAGTTGA
GAGACTAGACTACAAATTTAAGAAATGGAGCCTTTCAAAAGCACAGATTC
AATAGAAGAAAACACTAACTTTTGCAGCTAACTAACCTAAAAAATTTATG
CTGTTATAATTTCAGTTGATTGATAAATGCAAAGCACAAGCCCATCAAAC
ACCAActgtttttgaagccttagtgGAATCTGTAATGGTTGCTCGCATTG
CTACCTTGGATGATGTATCAGGTCGGTGTGCGTTCATAAAAATATTAAGG
TTACCAGTATAATCTAGCATGTTAGACGAATAATTCAAACATAGTAgaaa
tcaagtaaaaaaataaataaaaaaaaaacaaattgaaaaaactaatttta
tccTGTAATATACATAAGACCTATATTACTGTatttaatatataaaattg
aATTTCCATCTGAAATGAAAATATCGACCTTGACCTTGTGTTATGTAATT
CTAGTTTAACCGTATCTTTTAAAAGTATGAAAATATCTACGGACGTTTTC
ATGAATGAGACTTTACCTCTAAACTTTAGGTACAGTTGCCCCTATCTTAT
TCTTGTtgtaaatttgtatatttttagaaAGCAAAGTTGAAGCTTTTTGG
AATCATGTTTTGGATGGCAAGAAGAGATTCcttattccagaaaaaatatt
GGCTAACCCATCAAAAGAGTGTACGGGTTTTTTAAGCTATCATgagattt
ttttgaataaacatctgaaaaaatattataaacctTCAACGGCTCGCAAT
TTACCctataaagttgtaaaataaaTAGATCGAGAGTTATCCtctacttt
ttttttcttacagtttcatttatttttttaactattttgATTTAGATCTT
TTCCAACTTGCAAGCTTTGTCAATTTGCTCTTCACCAGTTTCTATGAGAA
AGCTTTGGCTGCTGGTACTGAGTAAGTGAATGTTAAACAATATTCTCATT
GTATTGAgccattccattaaatttccatataGGGTGGGGGGATCTGGACG
AAcctttcaagtcaaaaaatatggatacctggaaaatggcaaactttccc
aaaaaaaactttaaaaaattatgatgaactaaaatcagtcttttgacctt
ggaaaaatgaaaaatgaaaaaaacactggAAATGTTTGTCCACCCACTGA
ATGGATAAAAATAGGACGGCCAATTTTGAAAAGCTGTTTCAAGCAGGCAC
TTAAACTGAATTACAAATTCTGTACTACTGGAAGTTAATATAATAAAGAA
AATCCAAAGAAGAATAGGTAGCAAAGCAAATATTTAAAAGGTAACTGGCA
AATTAGGATACGCAAAATATTAGACATAATGAAACGTCTATGACGTTACA
ACGTAGATTATAGACTCGACCTTGAGAAAAGGAATTGTTGAAAGTAACTA
ATGAGATAACAAATacatataatttttattttaaaacttttttttcagac
CTTGGTACGAAGCTTTGGTTGTTATCTTACTGCATGGTGATGTCAACAGC
CAAAAGATAGTAAAGAACCTGATCAAGAAGCTTATGGAAAGTGAAGATGT
GGACAACCTTCAACTCATGACATCCATTGTTGATGAACTTGATAAAGCTG
TCCGAAAGATTAAAGTATGAAACGCAATAGATATCTAGATATGCTATATT
TCATTCAATGTGCTTTTCTTATAAGCGGTACTCATTGTGTCTATCATCAT
TCGCATTACAAACTTTAGTTAAAGTAGGAAGTCCATCATTTTTTGATAGG
TAATCGCCCATTTCTCACGCTAGCATTTGTACATGATAAAATAGTGGCCA
AAATTTTGCCTATGAATGCTCCTGTAACTTTGCCAACGTCTCCCTCCTTA
AGAATTTTGCCTTTCGGTCTGTTAGAGTTGACCCCCTCCTGCACGAGTTA
GCCACAATGTATCTCACTATTTATTCTCTACAAACAGCCCTCAAAAGACG
ATGAAAAACCGTTCCCATTGAAAACGTTTGGTAGCTGTTACACCTTCTTA
GCGTCATGTGCTGGTGAAAATAGAGAAGAATTATTATCTCTTTGTTTGTT
CAAAGTTCACCATCCACTTCTGGGTAAGCAATTGTGAAACTTTCCAAATT
TCGTTACTACAAAGTCCTGTGAAAGGGATATTCTTTATGTCGGGTTTTTA
GGAGGCATACCCTATCTAGCTGGATCATACTCCTTTCCCACCAAATGTTA
ATCATTATTAGGAAGCAGGCCCAACCAACTATTAATTTTTTAGTGTTTAC
TGGCAAAGAGTATGTAGTCTCAAAAGAAATCATCTagaattgtttttttc
atttcctgACCTTTTTTGATTTATATGTTGCCATAATTATGTTCATTTGT
ATGTTTTGTATTTCATCGTTTATAGCTGCTGAAGATCCAAGCTTGTTCAC
GAAAATGATCCGTATTATGCAACTGGATGCTGGTCAATTTGTTGTCAATA
ACAAAGATCAAATCATCAATTCACTTATGGAGATTGAAAGCTTTGAAGAG
GTTTGTACTATTTTTTAAACTGACTGGTGTGGGCTAGGCTAGAAGAGGGA
TTCTCCTTAATTTTTCGGATTATAATCCAAACGATTATTAACGATAAATG
ATAACGATAAATCGTTTAAAAGTCTCTCGAAAAGGGTTATTACTGAGACA
TCGTAAATTCCATAGAATAGGAAAAATCCATAGGCCTATTGAGGAAAATT
GtacatgtttttatttcttgaaatcaaaaaagaagaatgaGTTTGTCAAA
CCTTGTTTTTACAGATGCATGTTCACACTATCAAGAATTTGTTGAAGTTT
TCACCAGAAAGTATGGTCACACCATGTATGACCATGATCAAAGAGAACTT
CCAGAAGCCAGCTCTAACGATGGTCACTGNGTTTTCACCAGAAAGTATGG
TCACACCATGTATGACCATGATCAAAGAGAACTTCCAGAAACCAGCTCTA
ACGATGGTCACTCAACAAGAGTATAATATTATGTTGACACCTGATGGCGA
AGCTTACGACCAAAGTGTTTACGAAAGGTAGGAGCATTAATGTTTTGAGC
TCAAGTAGATTATCAAATTAGTTCATTGTCTGAACAATACACAAGCTTCT
TTTCATGACCATGCCTAAATGTTGTGCTAGAGtcagggggggtcaagcag
ttagtacaagacatcatgcctactaagtgattctttggaggaaagaggcc
acaccaccaccctttgacAGTTAGTATGAAATATACTAAGTGATTTCAAA
GGAAATTCACTAAGGACCACCCCTTAAAACCTGTCAAACGAGAGTGTGAT
ATTTACTTTATGTCAAACCATGTtcccaaaattgttttgaaacagTTATT
GATTTGGTATGATGAattaaaatgaatcaaaaattttattttaacacaaC
GCTGTACAGCGATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaaaata
ctttttcatgatttataaAGAACAAGATTACGAACTTTTACAATTTCAAA
ATCGATCTAAGTCAAGAAAATAGTAGCTTCAATGTTCTACAgggaggccc
ggaaaacccgagttacaaaaactcgagttacaaaaacccgagttacaaaa
acccgagttacgacgaatgtgacgtcatacgtctaaaattatgacgtcat
aagggaacttcttaactcgaaaaagttttatactgttgttttgtaactcg
aaatatttttttaaaattttgttttagagttacgtaactcgaaaataaat
tttaaatttcatttttcgagttacgtaactctaaaacgaaatttaaaaaa
aatatttcgagttatgtTGAAGCGCAACCAAGTtggccaaaaattctaaa
aagcgctctttttctttttgtttaagaATGGGGTTTTTGATCTATNCACT
AGAGATCTTATGGTTTTAGACACGCGCGTATAAAGTTATACACCGGCGTT
TAGTGTTAAACGCCACTTTTTCAacaagtgagtaccaagcttaaAAGAAG
AGAGGAagggaataaaaatgaaaggggACAGTAAACAATCTTCTATTTTG
ATGGGAATTTCTGAAGGTTTTGTTGGGTGAAGTAGACTTAAAATCTAAAA
GATTCGATTACTCGAAATACATTTTGTATTCCACAATCTAAAtttgttaa
attcaaattcattgtcctttcgctaaaaactaaaaacttcgGTAGAACTT
GTAGTTTCTTTAGGTTTTTCACAcagtttttaagaacaaaccataCGAGA
ACAGAAGGTTTCGAGGGCTGAAATTATaacaataagttaagaacatttct
tgaCATTCTAAGGCcttatggactcaaaaacacctaatttcttagaaaat
tacagaaaataCTCACCTAACGCTAATAGtgaaataggaacattttaaga
aaattttaaggctcaACTAAAAAAGCTAAAGACCCGAAGGCCtcgaattt
ttagatgttcttataaaaaaacacaacacaTATTTCGTTGAAAAGATTCT
CGATTGCACAATGTACAAAATAATATAATGAATTGTAATCGTTAAAATNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNctctaaaacaaaatttaaaaaaaat
atttcgagttacaaaacaacagtaaaaaactttttcgagttaagaagttc
ccttatgacgtcataatttgagacttatgacttatcacattcgtcgtaac
tcgggtttttgtaactcgggtttttgtaactcgagtttttgtaactcggg
ttttccgggcctcttCTACAGGGGAAAATCaactgacttttttcttttat
ttatcatTTNgcatgacccccccccctgctagAGTAACTGACTAGTCTCC
CTGattgatttcatatttttacattCTTTGAATTCTAGCGCAAAAGCAAA
TGCTTCATCAGCGTCCAATCAGAAGAAAGAATCGAAAGCTTATTCCTTCa
aagaacaaaaaattgaaatggaaCTCAGAGAGGTGAGCGAATTGGTACCA
TACCTTGCatgaatatttttattcttGGAAGGGTTTTATCTTTTCCTCTT
ATAGAGCTCGATGATTTAATAGAGCAGTATTATGCAAAGACCTTCCAAGG
ATTGTAACACCCTTAAAAAGCACCAGGTTTATTATTAGAGCAGTATTATA
ACAAAAGTGGATTTAATTCTTATTTCAAACTCAAAGTTTCATGGCGCATT
TTCACGCCATTAGACTCTGAGTTTGAAAGAAGGATTTACCCAACTCCCGt
taaacatatttttattaAGATCTACAAGCATCATCTCAGCTCATTATGAC
AGATGAAACACAGCTTGATAGATTTCGGTTTTAGCTTCCTTCACTCTCTT
AGCCTCTAACTTTGATCATTGTTAAAGCCCCAGACAGCAGAATCTAACTA
TTCTAATAATTATATACAAGTTCGTGAGCAAGTTCTTAAAGGAAGGAATT
TTTGAAGGTAATGTAATAAGTAGATGAAATTACCGCGTTATTCTCGTTCC
AGgagttgaagaagaagaaacctCAACCagagaaaaagattgaattgaat
aaaaaacaaaaagaacaatTACAAGCCATCTTAACTGAAGAAAAGAACAT
TCGGGATAATCTCAAATCTGTAAGCCTCCTTTTACATTAAagcatagcgt
cagcctgggtttaggtcccaggcaaaaattaggtcccccctgagttttaa
gtccccccaaagatttgtgaattttttgttagctCCCAGGACTTTTGACT
CTAGacactttaaaaaaatagatccagtaaaaaagttttttccaatttaa
TTTGCAttcagttctaagtttaagataaaatatttagcacactttttata
aaaatattgggCCGCAGgcaaaattttttcagattcatgagcttcaattt
gggtaattgaagccaactattaagctgaattattttagcccccatgttaa
gtgatgagattttagctccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNattttagctccccccaattacataggtcccc
ccaaaaaagtggtgtacttccagccccctccttttttgggaaagatttag
ggtgtaaccccccccccaactAGCAGGGGGTGCTGACGCTATGTAAGTTT
TTTATCCTAACGTTCTTAAAGTGTTGAGAACATTCAGATTATTTCGAATC
CTCAActcgaaaataatgaaaaaattgttCTCCCCAAAGAGACAGAATAC
TTAAGCTTTTGTGATCCCTGATTGACACACAAATCCCCCTAAAATATAAA
TCACCAActttttaaaaggttttaaatCGAGGGTCTCCTTTATANCCCCC
TAAAATATAAATCACCAACTTCTTCCAAAAGGTTTTAAATCGAGGTTCTC
CTTAATGAGAAAGCCTAATCAATTCTAACATGATTTTGTTTATTCAGTTG
GAAAAAGCATTCGTGAAGCATGCAATCCTCCTGGATTGTTGTTTGAACGT
CGaatcaaaacacttgaaatatCATTACCTTCGAATCATGAGCCTTTGCT
TGACTCTCTCAAAATCTTACCTGACTGCACAGCACGCTGTTCGATGTTAC
ATCAAGATCTCACAATGTGTCTTCGGTGGAGAATTCAAGTACTTAGGTAA
GGAGATTGACAACAGTTTCTACGCATTTCTTTTTAAACGCAAATCTTAAT
GTGATGTCTTTGCAAATCTTCATTTTGTGTCTGATTTGAGATCATTGTTG
TGTATGCTTATTTTCTCGAGGTAAAAAAAATGGACACATGAGTTCTCATT
ATCAGTTCTCTATTAGGACAATAGATTCTGTCAAAACTCTATTTTTTTAA
GTAGTTTtaagttatggagtaaggtttttaGGGCATTGTTAattgaaggg
acgagaaaatttgttcgagttaaggagacatcgagttatagaggttcgag
ttaaagagactccaatGTATATTGCAACAGATTTTGTCCCATGAAAACTT
TGGATATATCAGAtccccttttgaaaactttcaTCGTCTATTTTAGGTGA
ATTGATTGCAAACGTTATCCTACGCCATCGTCAAGCCGCCTGTCAACTCC
CCCGAGCCTGGCAAGAAN

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_007905	XLOC_007905	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000181	supercontig	sc0000181:378444..392311 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0795123	0.183929	0.00782452	4.72158e-06	0.18686	5.57375	5.71785	7.97673	3.62344	0.101269	1.57183	2.26122	4.41415	6.55698	1.4039	4.92344	0.0746593	0.404373	0.254521	1.19424e-05	0.0255295	5.56	0.00475448	0.198928	15.7921	2.11799	0.00141649	0.00796695	0.000983865	0.0177674

Blast

[Close]

BLAST of TCONS_00014115 vs. Swiss-Prot (Human)
Match: GCN1 (eIF-2-alpha kinase activator GCN1 OS=Homo sapiens GN=GCN1 PE=1 SV=6)

HSP 1 Score: 320.472 bits (820), Expect = 2.047e-90
Identity = 277/995 (27.84%), Postives = 479/995 (48.14%), Query Frame = 2

Query:   47 SNEELAKTFKFCLLNIPSASLNTRKDVINQLSHLVENGGISDAHLKGIAKILVLTLHRYRDKKSRLLVVNFLQKTLIKLHGSTAALALLNETNSVLDKLQGGEYGSHANASLALFVF*NCFFYFCSHANASLALFALWWCRIIAEAI--KDISSQTDLFKQIVKCEVLAYSLVAKYKPKSGRETYIRKAHLFLVTPKNTNHLEKYLETLIKEESLHMNGLCIVGFIYRNLLANNNVDVVEXXXXXXXXXXXXXXXXQTKVKALPHSLSAFKPFLKSLAHEEFTE-ILPIIQKSLLRNPETILEAVGYTFQGLSIDPSKYMEEISKFLPAHLASKSENLRSATITALGNLSNQCSDVSAIEMLVNQLFKVLNGSEGKLAMPEQRGDVLKAIEQVSNTAVSGKAQLEELATNAVKEL-LPYLLQEGNEGALLQGLSTLKTWSTYFTTNLPKDFFSQIQKAISAKGCSTVVRTHYIIACNEALKGNTLIQGTEFLQTLTQLIDKCKAQAHQTPTVFEALVESVMVARIATLDDVSESKVEAFWNHVLDGKKRFLIPEKILANPSKEYLFQLASFVNLLFTSFYEKALAAGTEPWYEALVVILLHGDVNSQKIVKNLIKKLMESEDVDNLQLMTSIVDELDKAV--RKIKP-----------SKDDEKPFPLKTFGSCYTFLASCAG-----ENREELLSLCLFKVHHPLLAAEDPSLFTKMIRIMQLDAGQFVVNNKDQIINSLMEIESFEEMHVHTIKNLLKFSPESMVTPCMTMIKENFQKPALTMVTXFSPESMVTPCMTMIKENFQKPALTMVTQQEYNIMLTPDGEAYDQSVYXXXXXXXXXXXXXXXXXXXYSFKEQXXXXXXXXXXXXXXXXXXXXXXLNKKQKEQLQAILTEEKNIRDNLKSLEKAFVKHAILLDCCLNVESKHLKYHYLRIMSLCLTLSKSYLTAQHAVRCYIKISQCVFGGEFKYLGELIANVILRHRQAACQLPRAW 2965
            ++ ++++T K     + +AS+  R++++++L   V    + +  +KG+ K+  LTLHRYRD  SR  +   +Q+       +TA         ++L  LQ    GS A                 S ++ S AL AL W  ++   +       Q D++ ++V+ + L    V     K   +  ++K  L  +  +N   +E+YL  ++  E  + N   ++G + +   ++  +DVV + K  ++      I + +KVK   + L +  P L+ L+H EF + ILP IQKSLLR+PE ++E +      +++D S+Y  +I K L  HL S S  L    + AL NL+ QCSD SA+E L   LF +L GSEGKL +  Q+  VL  I  VS+  VSG +   ++    V EL +P+L QE +EG L+  +S L  W   FT  +PK      +KA S K  ++ VR  Y+     + +G+TL+Q  + L  L Q ++K  +Q+ Q PT+ E +  ++++ +++  D  +E+K+ +FW  ++D KK+    EK L   S++ L  +      LF     +      + ++ ALV +LL    + ++  +  ++KL+ S  +   +L   +++EL   +   K+ P           ++  +   P +        ++   G      + E+L    L   HHP L A    L+  ++  M++D   F+  + DQII  +       +  ++ + +L   SP+ ++   ++ I  + Q P                            AL +VT++E+ IM TP GE YD+S+ +SA+ ++   +N K+E+KAYSFKEQ I     +E  KKK   +++++L  KQKE LQA L  E  +R  L+ L+        LLD  L      L  +   ++   L L KS L A      ++ ++ CV     K LG L+++V LR  +  C L ++W
Sbjct:    3 ADTQVSETLKRFAGKVTTASVKERREILSELGKCVAGKDLPEGAVKGLCKLFCLTLHRYRDAASRRALQAAIQQLAEAQPEATA--------KNLLHSLQSSGIGSKAGVP--------------SKSSGSAALLALTWTCLLVRIVFPSRAKRQGDIWNKLVEVQCLLLLEVLGGSHKHAVDGAVKK--LTKLWKENPGLVEQYLSAILSLEP-NQNYAGMLGLLVQFCTSHKEMDVVSQHKSALLDFYMKNILM-SKVKPPKYLLDSCAPLLRYLSHSEFKDLILPTIQKSLLRSPENVIETISSLLASVTLDLSQYAMDIVKGLAGHLKSNSPRLMDEAVLALRNLARQCSDSSAMESLTKHLFAILGGSEGKLTVVAQKMSVLSGIGSVSHHVVSGPS--SQVLNGIVAELFIPFLQQEVHEGTLVHAVSVLALWCNRFTMEVPKKLTEWFKKAFSLKTSTSAVRHAYLQCMLASYRGDTLLQALDLLPLLIQTVEKAASQSTQVPTITEGVAAALLLLKLSVADSQAEAKLSSFWQLIVDEKKQVFTSEKFLVMASEDALCTVLHLTERLFLDHPHRLTGNKVQQYHRALVAVLLSRTWHVRRQAQQTVRKLLSS--LGGFKLAHGLLEELKTVLSSHKVLPLEALVTDAGEVTEAGKAYVPPRVLQEALCVISGVPGLKGDVTDTEQLAQEMLIISHHPSLVAVQSGLWPALLARMKIDPEAFITRHLDQIIPRMTTQSPLNQSSMNAMGSLSVLSPDRVLPQLISTITASVQNP----------------------------ALRLVTREEFAIMQTPAGELYDKSIIQSAQQDSIKKANMKRENKAYSFKEQ-IIELELKEEIKKKKGIKEEVQLTSKQKEMLQAQLDREAQVRRRLQELDGELEAALGLLDIILAKNPSGLTQYIPVLVDSFLPLLKSPLAAPRIKNPFLSLAACVMPSRLKALGTLVSHVTLRLLKPECVLDKSW 938

The following BLAST results are available for this feature:

BLAST of TCONS_00014115 vs. Swiss-Prot (Human)

BLAST of TCONS_00014115 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GCN1	2.047e-90	27.84	eIF-2-alpha kinase activator GCN1 OS=Homo sapiens ...	[more]

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TCONS_00014115 (transcript) - C. hemisphaerica