TCONS_00014098 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014098
Unique NameTCONS_00014098
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2465

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014098 ID=TCONS_00014098|Name=TCONS_00014098|organism=Clytia hemisphaerica|type=transcript|length=2465bp
ATGGTTAGCACAATCAGATAAGATCCATGATATAGCAaccccaaaaaaaa
attgtaatgaaattgtttcaatatgtattattttttcaatttacagGAAT
TATGTAAAATCCAAAATGGTACCAGTGCACATAGCTTATGGTGGATTAGC
ACTGTTCATCAGTCTACTAAACAATGTGTTCCTTTTATTTTATGTAACAA
CTTTCTTGACAGTCTTTGAAATTGATAGTACGTCATTTTATATTGGAGAG
ACTATATTCTTAGTTTGGAATTCAATTAATGATCCATTATTTGGATGGCT
TAGTGATCACAATGTTTTGGAAAATAAATCAGATGCTTCCAAAGATGTAA
CCACTACAACTGTATTAAAACGTATCAACATTTTATCAAAAGTCGGACCC
ATTTACTCAGcatgttttcttttattttggtttCGATTTTTACCGGTTTG
GATTCAATTTTCAGTGGCACTTTGTCTTTATGACAGTTTTTTAACACTGG
TAGATTTACATCACCAAGCATTATTAGCAGATCTAGCAATTGAAGCAAAA
GATCGTGTCAAATTGAATAGTTATTGTTCAATGTTTAGTGCAATTGGCTC
GGTGTCTGTATTCTTATCCTTTTCATTATGGAGAAAAGACAATTTGTTCC
CGTTTCAACTATTTTGTGTTGCATTGGCATTGGTTGTTGCCGTGGGATTT
CATGTTTGCTGTAAATCTATGAAACAATATTATTTAACAACATCTATAAA
AAAGCGAGATGATGCTCAACCAGTTAGCAAGCAATATAAAACTAGTTTTA
CAGCTATGAAAAAGTACACATGCCAACTATACAGGCATCATAATTTCCTG
GTATTCTCAGTTATGAACTTTTTACAAGTGTTCCATTGTCATTTTAACAG
CAATTTCTTccctttatttatacaaaatttatTGGGACATAAAATTAGCC
AAAAAGGTGGTGCTGCTCTCCTTGGCTTATCATTCTTAGTACCACACATT
AACAATCTTTATTTCCTTCAACTATGCAAACGCTATGGAGTATATTTTAT
CATCAAAGTTTTATTTATGGTGAAAGTAAGTCTTGCCCTTTGTATGTGGC
ATCTTGGCGTATCGCATTGGTATCTCTTATGTCTTTTCATAATGAGTAAC
CGTATATTTACTGAAGGAACTTGTAAATTGTTAAATTTGGTCATCTCAGA
CCTAGTGGATGAGGATTATGTGAAATTTAAAAGGAGTTCGCCAGTATCAG
CTTTGGTATTTGGTACCGCAGCTTTCTTATCAAAACCCGGCCAAACACTG
GCACCAGTTTTAGGTTCATACTTATTATATGCTCAAACGGGGAAATCACT
TTTCTTAAAACAATCTGAACCTGATGCCGTTTATGAAGAGTCAAGTGATT
tttcaaatggttgttttttcgTTATGGTCATGGTATCGATTATTTGTGGT
TTGCTGCAGTTACTggtttggaaatttttctcattGAAAGAGAAGTAttt
acagcaagtgaaaaatgATCGATATTATATGGAGAAAGGTTACCATAGTA
ATGTCATATAAAATGATCATGGTACACATATTATTTCTAGACTATGTAgc
attttttagcattcaatTATGATATTTTAAACAGTTTTAACTAAACTTTC
TAATGAATTTTGTCTGtttttgctacatttttggtacaaCCAACAGGGAA
GTTTAAAATTCTATTGACTTGGACATTCATGTCAAATGAAgggatttttt
gtattttataaaaCTAAAAAGGGTGACTTTATCGCTTTGGGTATTCTGAG
GGCTGGTCTTTCAGGTATGTTTCACAATTATTTGTTGATAAAATTATTGA
TAGagttatttttattgtttttagagATTGTTCTAAATTTAaacctttat
tttttttatttctagctaaacatttttatttaacaTTAACGCAGTAGCAG
CGTGAAGACAGAGGAGTAACTTCCCTCTTATGCGGCCAAGTTTTTGATGA
CGGGCAAAAAACTTTGGGCACCCAAAGCGCCTCTAATCGCTAATTCAGGG
GTCCCTTTGCTATTTATTGCCCTAAAGTTAGTTATCTTTACCCAAGAAGA
GGAATGTTATCTAAAAATTTTCTGTTCGCCTCAATCGCGTAACctttcaa
aacatatatttcacaaaaattggAGGGGTGCTCTCAAAATACCTATTTCG
GAAAATTGCTTCCCCCATTTatcccaaattttggttgatCCACCATATGT
TATTGCAAAAGTTTCAATTATTTCTACAATGGCTGTAATTCGCAAAGACG
TTTCTCTTTTCTTACACTCAAGCTGACTcaagttaaaaaaatcattttga
taACAATATTCTTGGACACATATTAACCAGCTGTAGATTTGATCCAATca
gctttttgaattttatttttgttaaatagaaattttcgaaaattgcaTAT
TGTTTAAAACTAAGG
Run BLAST on NCBI

transcript from alignment at sc0000181:24969..27504+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014098 ID=TCONS_00014098|Name=TCONS_00014098|organism=Clytia hemisphaerica|type=transcript|length=2536bp|location=Sequence derived from alignment at sc0000181:24969..27504+ (Clytia hemisphaerica)
ATGGTTAGCACAATCAGATAAGATCCATGATATAGCAaccccaaaaaaaa
attgtaatgaaattgtttcaatatgtattattttttcaatttacagGAAT
TATGTAAAATCCAAAATGGTACCAGTGCACATAGCTTATGGTGGATTAGC
ACTGTTCATCAGTCTACTAAACAATGTGTTCCTTTTATTTTATGTAACAA
CTTTCTTGACAGTCTTTGAAATTGATAGTACGTCATTTTATATTGGAGAG
ACTATATTCTTAGTTTGGAATTCAATTAATGATCCATTATTTGGATGGCT
TAGTGATCACAATGTTTTGGAAAATAAATCAGATGCTTCCAAAGATGTAA
CCACTACAACTGTATTAAAACGTATCAACATTTTATCAAAAGTCGGACCC
ATTTACTCAGcatgttttcttttattttggtttCGATTTTTACCGGTTTG
GATTCAATTTTCAGTGGCACTTTGTCTTTATGACAGTTTTTTAACACTGG
TAGATTTACATCACCAAGCATTATTAGCAGATCTAGCAATTGAAGCAAAA
GATCGTGTCAAATTGAATAGTTATTGTTCAATGTTTAGTGCAATTGGCTC
GGTGTCTGTATTCTTATCCTTTTCATTATGGAGAAAAGACAATTTGTTCC
CGTTTCAACTATTTTGTGTTGCATTGGCATTGGTTGTTGCCGTGGGATTT
CATGTTTGCTGTAAATCTATGAAACAATATTATTTAACAACATCTATAAA
AAAGCGAGATGATGCTCAACCAGTTAGCAAGCAATATAAAACTAGTTTTA
CAGCTATGAAAAAGTACACATGCCAACTATACAGGCATCATAATTTCCTG
GTATTCTCAGTTATGAACTTTTTACAAGTGTTCCATTGTCATTTTAACAG
CAATTTCTTccctttatttatacaaaatttatTGGGACATAAAATTAGCC
AAAAAGGTGGTGCTGCTCTCCTTGGCTTATCATTCTTAGTACCACACATT
AACAATCTTTATTTCCTTCAACNGAAGGTGGTGCTGCCCTCCTTGGCTTA
TCATTCTTAGTACCACACATTAACAATCTTTATTTCCTTCAACTATGCAA
ACGCTATGGAGTATATTTTATCATCAAAGTTTTATTTATGGTGAAAGTAA
GTCTTGCCCTTTGTATGTGGCATCTTGGCGTATCGCATTGGTATCTCTTA
TGTCTTTTCATAATGAGTAACCGTATATTTACTGAAGGAACTTGTAAATT
GTTAAATTTGGTCATCTCAGACCTAGTGGATGAGGATTATGTGAAATTTA
AAAGGAGTTCGCCAGTATCAGCTTTGGTATTTGGTACCGCAGCTTTCTTA
TCAAAACCCGGCCAAACACTGGCACCAGTTTTAGGTTCATACTTATTATA
TGCTCAAACGGGGAAATCACTTTTCTTAAAACAATCTGAACCTGATGCCG
TTTATGAAGAGTCAAGTGATTtttcaaatggttgttttttcgTTATGGTC
ATGGTATCGATTATTTGTGGTTTGCTGCAGTTACTggtttggaaattttt
ctcattGAAAGAGAAGTAtttacagcaagtgaaaaatgATCGATATTATA
TGGAGAAAGGTTACCATAGTAATGTCATATAAAATGATCATGGTACACAT
ATTATTTCTAGACTATGTAgcattttttagcattcaatTATGATATTTTA
AACAGTTTTAACTAAACTTTCTAATGAATTTTGTCTGtttttgctacatt
tttggtacaaCCAACAGGGAAGTTTAAAATTCTATTGACTTGGACATTCA
TGTCAAATGAAgggattttttgtattttataaaaCTAAAAAGGGTGACTT
TATCGCTTTGGGTATTCTGAGGGCTGGTCTTTCAGGTATGTTTCACAATT
ATTTGTTGATAAAATTATTGATAGagttatttttattgtttttagagATT
GTTCTAAATTTAaacctttattttttttatttctagctaaacatttttat
ttaacaTTAACGCAGTAGCAGCGTGAAGACAGAGGAGTAACTTCCCTCTT
ATGCGGCCAAGTTTTTGATGACGGGCAAAAAACTTTGGGCACCCAAAGCG
CCTCTAATCGCTAATTCAGGGGTCCCTTTGCTATTTATTGCCCTAAAGTT
AGTTATCTTTACCCAAGAAGAGGAATGTTATCTAAAAATTTTCTGTTCGC
CTCAATCGCGTAACctttcaaaacatatatttcacaaaaattggAGGGGT
GCTCTCAAAATACCTATTTCGGAAAATTGCTTCCCCCATTTatcccaaat
tttggttgatCCACCATATGTTATTGCAAAAGTTTCAATTATTTCTACAA
TGGCTGTAATTCGCAAAGACGTTTCTCTTTTCTTACACTCAAGCTGACTc
aagttaaaaaaatcattttgataACAATATTCTTGGACACATATTAACCA
GCTGTAGATTTGATCCAATcagctttttgaattttatttttgttaaatag
aaattttcgaaaattgcaTATTGTTTAAAACTAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007897XLOC_007897Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014098-exon-sc0000181-1491911889:24969..25965TCONS_00014098-exon-sc0000181-1491911889:24969..25965Clytia hemisphaericaexon
TCONS_00014098-exon-sc0000181-1510915933:24969..25965TCONS_00014098-exon-sc0000181-1510915933:24969..25965Clytia hemisphaericaexon
TCONS_00014098-exon-sc0000181-1575043694:24969..25965TCONS_00014098-exon-sc0000181-1575043694:24969..25965Clytia hemisphaericaexon
TCONS_00014098-exon-sc0000181-1491911889:26037..27504TCONS_00014098-exon-sc0000181-1491911889:26037..27504Clytia hemisphaericaexon
TCONS_00014098-exon-sc0000181-1510915933:26037..27504TCONS_00014098-exon-sc0000181-1510915933:26037..27504Clytia hemisphaericaexon
TCONS_00014098-exon-sc0000181-1575043694:26037..27504TCONS_00014098-exon-sc0000181-1575043694:26037..27504Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000181supercontigsc0000181:24969..27504 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.07985	2.93977	0.551978	0.365823	7.29653	3.36149	7.54012	7.46521	2.78909	4.24411	2.1708	1.95084	2.80538	2.21577	1.03064	0.958295	1.8715	0.931713	0	1.47599	0.856534	0.808381	3.92176	5.31948	1.92481	4.38502	3.87243	6.61625	13.0939	9.56242
Blast
[Close]
BLAST of TCONS_00014098 vs. Swiss-Prot (Human)
Match: MF13A (Transmembrane protein 180 OS=Homo sapiens GN=MFSD13A PE=2 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.741e-123
Identity = 232/507 (45.76%), Postives = 320/507 (63.12%), Query Frame = 2 
Query:  119 VPVHIAYGGLALFISLLNNVFLLFYVTTFLTVFEIDSTSFYIGETIFLVWNSINDPLFGWLSDHNVLENKSDASKDVTT-TTVLKRINILSKVGPIYSACFLLFWFRFLPVWIQFSVALCLYDSFLTXXXXXXXXXXXXXXIEAKDRVKLNSYCSMFSAIGSVSVFLSFSLWRKDNLFPFQLFCXXXXXXXXXGFHVCCKSMKQYYLTTSIKKRD--------------DAQPVSKQYKTSFTAMKKYTCQLYRHHNFLVFSVMNFLQVFHCHFNSNFFPLFIQNLLGHKISQKGGAALLGLSFLVPHINNLYFLQLCKRYGVYFIIKVLFMVKVSLALCMWHLGVSHWYLLCLFIMSNRIFTEGTCKLLNLVISDLVDEDYVKFKRSSPVSALVFGTAAFLSKPGQTLAPVLGSYLLYAQTGKSLFLKQSEPDAV-------------YEESSDFSNGCFFVMVMVSIICGLLQLLVWKFFSLKEKYLQQVKNDRYYMEKGYHSNV 1555
            +P  + YG LALF ++L+NVFLL+YV TF++V++I+  +F++GET+FL+WNS+NDPLFGWLSD   L ++  +   +++   VL R+  L   GP+ +  FL FW  + P  +QF + LCLYD FLTLVDLHH ALLADLA+ A DR  LN YCS+FSA GS+SVF S++ W K++   F+ FCV LA+   +GF    + +++        ++D              +   V  +   S T + +Y  QL RH NFL F  M+ +QVFHCHFNSNFFPLF+++LL   IS   G+ LLGLS++ PH+NNLYFL LC+R+GVY +++ LF++K+ L+L M   G  H  LLCLFI SNR+FTEGTCKLL LV++DLVDED V   R    SAL+FG  A ++KPGQT AP+LG++LL   TG  LF +QS    V               ++     GCF+++V+V I C LLQL  W  F+L  + L  VK  R  + +    +V
Sbjct:   13 LPTAVVYGSLALFTTILHNVFLLYYVDTFVSVYKINKMAFWVGETVFLLWNSLNDPLFGWLSDRQFLSSQPRSGAGLSSRAVVLARVQALGWHGPLLALSFLAFWVPWAPAGLQFLLCLCLYDGFLTLVDLHHHALLADLALSAHDRTHLNFYCSLFSAAGSLSVFASYAFWNKEDFSSFRAFCVTLAVSSGLGFLGATQLLRR---RVEAARKDPGCSGLVVDSGLCGEELLVGSEEADSIT-LGRYLRQLARHRNFLWFVSMDLVQVFHCHFNSNFFPLFLEHLLSDHISLSTGSILLGLSYVAPHLNNLYFLSLCRRWGVYAVVRGLFLLKLGLSLLMLLAGPDHLSLLCLFIASNRVFTEGTCKLLTLVVTDLVDEDLVLNHRKQAASALLFGMVALVTKPGQTFAPLLGTWLLCFYTGHDLF-QQSLITPVGSAHPWPEPPAPAPAQAPTLRQGCFYLLVLVPITCALLQLFTWSQFTLHGRRLHMVKAQRQNLSQAQTLDV 514
The following BLAST results are available for this feature:
BLAST of TCONS_00014098 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MF13A2.741e-12345.76Transmembrane protein 180 OS=Homo sapiens GN=MFSD1... [more]
back to top