TCONS_00014060 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014060
Unique NameTCONS_00014060
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length480

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014060 ID=TCONS_00014060|Name=TCONS_00014060|organism=Clytia hemisphaerica|type=transcript|length=480bp
TTCGTCACAACTTGTATTTGCACGATCAAAACTCGTTCCTCAACCATCAA
CACAACCTCGAGCAGAGATGTTTGCAGCATTAATAAACGTACACACTGGT
GAAGTCGTCAAGAGAGCATTCCAACAACATCACAAGGGATGCTTGAAAAT
CACAGACAACACCATCGAGCTTCACTGGATATCAAACACTGAGCTTCAAC
TCAAGCAGTGGGCTCGAAACATAGTAATCGAAGTCCATCGACTCACAAAC
ATCGAAGACTGGCGATTCATCGACTCCAATCAAATGATGGCTGACTTAGC
AACAAGGAGAGGTGTCCAGTTATCAGAGGTCCAGCCAAACTCAGAATGGT
TCGTCGGCTAAGGCTGGATGCACCAAGATGAATCCAAGTTTCCTGTTAAA
AAGCAATAGTTATCAAGAGCATCAGGAAGATGAGATGGATGAGAAACAAC
AAGAAAAAGACGAGATCAGCCACAGCAAAG
Run BLAST on NCBI

protein sequence of TCONS_00014060-protein

>TCONS_00014060-protein ID=TCONS_00014060-protein|Name=TCONS_00014060-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
SSQLVFARSKLVPQPSTQPRAEMFAALINVHTGEVVKRAFQQHHKGCLKI
TDNTIELHWISNTELQLKQWARNIVIEVHRLTNIEDWRFIDSNQMMADLA
TRRGVQLSEVQPNSEWFVG
Run BLAST on NCBI

transcript from alignment at sc0000180:209835..211514-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014060 ID=TCONS_00014060|Name=TCONS_00014060|organism=Clytia hemisphaerica|type=transcript|length=1680bp|location=Sequence derived from alignment at sc0000180:209835..211514- (Clytia hemisphaerica)
TTCGTCACAACTTGTATTTGCACGATCAAAACTCGTTCCTCAACCATCAA
CACAACCTCGAGCAGAGATGTTTGCAGCATTAATAAACGTACACACTGGT
GAAGTCGTCAAGAGAGCATTCCAACAACATCACAAGGGATGCTTGAAAAT
CACAGACAACACCATCGAGCTTCACTGGATATCAAACACTGAGCTTCAAC
TCAAGCAGTGGGCTCGAAACATAGTAATCGAAGTCCATCGACTCACAAAC
ATCGAAGACTGGCGATTCATCGACTCCAATCAAATGATGGCTGACTTAGC
AACAAGGAGAGGTGTCCAGTTATCAGAGGTCCAGCCAAACTCAGAATGGT
TCGTCGGCTAAGGCTGGATGCACCAAGATGAATCCAAGTTTCCTGTTAAA
AAGGTAAGCGAAATTACTCTTGCCTCTAAAAGATCTTCAAGAGTTTCACA
AAGAAACACAGGCATTAAAGTCAATAGACTTAAAGGCACCTCTTGATGTT
ACATGCAACGTCAACTTTGTTGTTCCATCGGAAGTAAAAGCAAGATACAC
CTTCTCGGATTATTTAAGGGCTCTGACCATAGTGAATTTTTCATAATTGT
CGTGTTTAAAATGTGTTTTCTGACTGATGTAACCAATAAAACTATGGCAT
GTTATACATTTTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTGAATCTGAAAATTCAAAAATTGCATTGA
AAAAATTTGACGAAGAAGAAAATGAAGACTTTTGCGAGGAAGAGTATTTC
AACTTTGAAGAGCTTAGTTTCGGCGAGGAAAAAACATTTTGAAAAATTTT
TCGCAGTACATGGTGTATCATTTACCGAACAATAAAAATTTTTGCGGAAA
ATTTTTGTAAATGCTTCTTTGTCTCGAAATCTTCAAAATAGTGGTTTTTC
ATCAATTTTTCATCTGGATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTTTTCATCTGGATTTTGCTTAAAAAAACA
GTCATAACTTTTGACACATCTTTTTAGAAAAATTTTCCGCAAAATTTAAA
ATAGTTCAATTCTTTGCGGACGGTGTAAAGAAATTTTGAAACAAAAAAGT
TAATTACCCATTAAAACTAAGCACTTTTTGTAAAAGAGGGTGATACAACA
TATTATTAACATATTTTTAAAGTTCATAACGTCATTTTTGCAATTAAATT
CTTAATTACTCTTAAGGGATTCGATTAAAAAGCAATTTATAANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTTGTTAGAGTTT
TAGCAATAGTTATCAAGAGCATCAGGAAGATGAGATGGATGAGAAACAAC
AAGAAAAAGACGAGATCAGCCACAGCAAAG

Coding sequence (CDS) from alignment at sc0000180:209835..211514-

>TCONS_00014060 ID=TCONS_00014060|Name=TCONS_00014060|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at sc0000180:209835..211514- (Clytia hemisphaerica)
TCGTCACAACTTGTATTTGCACGATCAAAACTCGTTCCTCAACCATCAAC
ACAACCTCGAGCAGAGATGTTTGCAGCATTAATAAACGTACACACTGGTG
AAGTCGTCAAGAGAGCATTCCAACAACATCACAAGGGATGCTTGAAAATC
ACAGACAACACCATCGAGCTTCACTGGATATCAAACACTGAGCTTCAACT
CAAGCAGTGGGCTCGAAACATAGTAATCGAAGTCCATCGACTCACAAACA
TCGAAGACTGGCGATTCATCGACTCCAATCAAATGATGGCTGACTTAGCA
ACAAGGAGAGGTGTCCAGTTATCAGAGGTCCAGCCAAACTCAGAATGGTT
CGTCGGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007869XLOC_007869Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014060-proteinTCONS_00014060-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014060-exon-sc0000180-1575043694:211112..211514TCONS_00014060-exon-sc0000180-1575043694:211112..211514Clytia hemisphaericaexon
TCONS_00014060-exon-sc0000180-1575043694:209835..209911TCONS_00014060-exon-sc0000180-1575043694:209835..209911Clytia hemisphaericaexon
TCONS_00014060-exon-sc0000180-1510915933:211112..211514TCONS_00014060-exon-sc0000180-1510915933:211112..211514Clytia hemisphaericaexon
TCONS_00014060-exon-sc0000180-1510915933:209835..209911TCONS_00014060-exon-sc0000180-1510915933:209835..209911Clytia hemisphaericaexon
TCONS_00014060-exon-sc0000180-1491911889:211112..211514TCONS_00014060-exon-sc0000180-1491911889:211112..211514Clytia hemisphaericaexon
TCONS_00014060-exon-sc0000180-1491911889:209835..209911TCONS_00014060-exon-sc0000180-1491911889:209835..209911Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000180supercontigsc0000180:209835..211514 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.739118	1.46086	0.250355	0.396146	0.882725	0.286175	0.336622	0.350354	0.245898	0	0	0.414233	0.251133	0.692883	0.148675	0.398877	0	0.302192	0.30598	0.997046	0	0	0	0.469284	1.08885	0.792863	0	0	0.215134	0.148042
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014060 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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