TCONS_00014048 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014048
Unique NameTCONS_00014048
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1056

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014048 ID=TCONS_00014048|Name=TCONS_00014048|organism=Clytia hemisphaerica|type=transcript|length=1056bp
TAGCCAAGATGAAATGTAAAGACCATCCAAAGATGTgtgattattatttt
tcacGAGGATATTATAACGATTGTGCTATTGGAGGTGTTAAATGGTATTT
CTGTCCTGACTCCTGTGGATATTGCGAACTCCTTAATGCTGGTACGCCCA
TTCCAAACCCACCGCCCGGTTGCCATGACTTTGAGTATTGGTGTCCAAGG
ATGGCGGAATATGGAGAATGTGATTCAAATGAAGCTTTCATGAAAATGTT
TTGTAGAAAATCATGCAATCTCTGTCTTGAAGCACCTCCATGTTACGACA
AAGACGAATTATGTTCCGATTTTGCCAGAGATGGGATGTGTATGTTGGAA
CCAGCCTATATGACGCAATTCTGTCAAAAATCTTGTGATTTCTGTATCAA
ACcGACCTTCGCACCCAAGAACATATGTGAGGATAAAGAACCAGCAAAAT
GCGCTCAACTTTTTATCAAACAAGCACCACACAATCCTTGTACTTACaat
ggtgaaaaaagaaaatggttATCAGAAAATTGTCGCAAATCATGTAAGAT
GTGTGCTAAAACGGGTGATTGTTTCGACGTAGATGCAAGTTGCCCGTATA
ATTCACAATATACGGATTATTGTACAAATAAGGATTCAAGATATCATACA
TGGATGTTAGAAAAATGCCAATATTCATGTGGACTTTGCAAGGATTAAAG
GaagtttgaatgaaattttgaaaatcgaaaaaatgtaATTCTATGGGTGA
TGTTTCTTAAATTCTGGATCCGTTAGTGGTCAAGGAGCcagtttatcttt
tttctttcgagTAGTCCCATCCTGAGAAATTTAAAtgcgttttttatatt
ttcccgGTCTGAATTTACTTTTATAACTTTTTCAGTACTGCACCAGCCTG
AATATTGCTCACGTTTAAGATAATCATATTCACTGATAAAAGAGCTTTCT
AGCGGACACCTTTTCCTTCACCCAAAGCAAAGAAATTCTAACATattcat
acacgctttttttatataagaatacactttataagaatgtccatgatgaa
aatggc
Run BLAST on NCBI

protein sequence of TCONS_00014048-protein

>TCONS_00014048-protein ID=TCONS_00014048-protein|Name=TCONS_00014048-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
AKMKCKDHPKMCDYYFSRGYYNDCAIGGVKWYFCPDSCGYCELLNAGTPI
PNPPPGCHDFEYWCPRMAEYGECDSNEAFMKMFCRKSCNLCLEAPPCYDK
DELCSDFARDGMCMLEPAYMTQFCQKSCDFCIKPTFAPKNICEDKEPAKC
AQLFIKQAPHNPCTYNGEKRKWLSENCRKSCKMCAKTGDCFDVDASCPYN
SQYTDYCTNKDSRYHTWMLEKCQYSCGLCKD
Run BLAST on NCBI

transcript from alignment at sc0000180:403353..422012+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014048 ID=TCONS_00014048|Name=TCONS_00014048|organism=Clytia hemisphaerica|type=transcript|length=18660bp|location=Sequence derived from alignment at sc0000180:403353..422012+ (Clytia hemisphaerica)
TAGCCAAGATGAAATGTAAAGACCATCCAAAGATGTgtgattattatttt
tcacGAGGATATTATAACGATTGTGCTATTGGAGGTGTTAAATGGTATTT
CTGTCCTGACTCCTGTGGATATTGCGAACTCCTTAATGCTGGTGAGATTA
TAAAAATAGCTAAAGACTgtcttcacttttttgaaaatttctcagCATGC
AATAATGCTATATCAAAAGTTCTACATCATTGGAAAGATTTTCCCAAGGG
GAATAATCTAAatgataaaagatttttgaaaagttgaaaaaaatcaagtg
aaaaaatgaagatgaaaaaagtgaGATTTTTTCTACTGTTTAAAAAATCA
TCACATGAAATTTTTCCATAATATTTGAACCTTGCTGATCTCAATTTTAT
GTTCAGATCTTTCGTATCTTTATTAGATAATAAGTTAAACGACTTTGAAG
AAGGCCTAAAACAGCCAAAAGTgaccaaaaacagcaaaaatgacCAACTT
CACATTGCTGGAACTGTTTTATCTGAGAAAGATTCGATAATTATCTGAGT
ACAGATTTGAAATCGACAAGGTCCAATTCTTCATAATTTATCATTTACAT
TATTCTCCTTGGAAATAAATTTCTAAAGGTGTATAAAACTTATTTCTAGC
ATAGTATGAATGGAAGCTGAGAAAATGTCGAAAGATTGAAGTGTCCTTCC
CTAAGGGCAAGCGACGTCTTATGGACATTCAACGGACAGCTTTAAGACCt
ttggacgtcctagaaacgtacattggacgtccaaaagacgtttgtgcCCA
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGAGTTTATACACGCGCT
CTTCATTAAAAAAGGTCTTCCCTATtttaccacaacattgtaaatttttg
tttataaccctgtctcaatccaatggatttggttggtttaatcggagaaa
cgttttttttaaataaagaaagcaaaaaggttacaagatattcaattcaa
atcatgggcaaaatgttttgatttgatttgattgttgaggttGAAATATC
TTCACGCATACTTTACATTGATTTTccaggaatacaaaagaaagaattaa
aatatgtgattactaaaacctgtaaatgcataattagaataattaatgca
tggatcgtgcatcgtgcatcgtgaatcgttggatcgcgcatcgtaaatta
cacaaaccgtaCATAACTTAGACTTTGAAGAAGGCCTAAAACAGCCAAAA
GTgaccaaaaacagcaaaaatgacCAACTTCACATTGCTATAACTGtttt
attgcccccgcaggagcgcagcgacgaggaggcactcatagtttcacgca
tagatattggactggaatctcgaaattttgttgtttttttgtgttttgtc
gcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatagctcca
attctggctttccaagttaggagggaccttcccgaaggcatttaacggtg
gttagactagatacacagacagtcatacggAAACACAataaagtaaaagt
atatagctataaactcaaaaagtctagcttcctggagGCACGTCttttca
ttgtctgcgctgcgatcatcttaatggcttctatcctttcagcttggaga
aaagattgcatcacatcatgaaaaagtactatgcacttgaaaaaaaatta
aagcgcatttcaacttttctcgactgtaagtCTGAatagaccacaatggc
attcctttatttttcttttgaccaacaacatagaagattttgcttgagaa
gtgaaATCACAGCGTACACAAGAGGAGCCcaggccttaactaggattggt
ttcacccaatttaagatggcgcagaactttttgataaattttatacgtag
tattttcttgactattgtttattaggcaaagtagcaatagagaattgttN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNtaatagacctttttttaaagagg
cagccacgttgaataattatgtactccagcataaaaacagtgatacagcc
atgcataattactgtattatgcatattttgaaaattatgcatggctgtat
cgttgtttttatgctggagtacatgattattcaaaatggctgcctcttgt
taaaaaaggtctattcaccgctatatattttgcctacaatctaagatgtc
tgcggcattatcagaaaaggtctattgtgaataataatcatgacatatat
tgttgtaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNaaagctttataagtgcatgacatgatcttctgc
gtgggcatttagtgaaagctatgactagtctGAGAAAGATACGATAATTC
GGAGTACAGATTTGAAATCGGCAAGGTCCAAttcttcatcatttttcaat
taataaaaaatcttttatcaTTTACGTTATTCTCCTTGGAAATAAATTTC
TAAAGGTGTATAAAACTTATTTCTAGCAGTATGAATGGAAGCTGAGAAAA
TGTCGAAAGATTAAAGTGTCCTTATACTTTTGAGACAAAACCTGGTTAAA
TTGTTCTGATCAAAAAGAGTGTATTATTTCTCCATGTAGCCCAAGGCATA
TTGCCAGCAGGTCAAGATTTTCATTTATCTTAAAATGTTTTGTGCATTTC
TTAACGGAAATTCTTCATATATgtctactcttgtctcccgaatagacggg
gggggggtccaaaTAAGCAGGGAGGTAGGAAAATATTctattaaaaataa
gttagtttgatattcagtttgatattcgaaattcagtttgatattcgaCT
TTTTGCTCTACgaaggagagcagacatatgttgcacttttaaacttcaaa
atatgttagccactattcctaagtatcatttccaccaaaaatggtcgctc
tccgccacaatgggggagctctaaaattatacaaaaaatatgaacatttt
taaaaacattgctGAGCTGCATCAAATATTTAACAGAtgactgctctccc
tcatagggctcaaaatgctaattagtcgattttcaaactaagtggttgta
taattttagagctcccccattatggtggagagcgaccatttttgatgaaa
atgatacttaggaatagtggctaacatattttgaagtttagaagtgcaac
atatgactgttctccctcatagggctcaaaacactatatagtcgattttc
aaactaagtggttgtataagtttagagctcccccattgcggtggagagcg
accatttttggttgaaatgatacttaggaatagtggctaacatattttga
agtttagaagtgcaacatatgactgctctccctcatagggctcaaaacgc
taattagtcgattttcaaaNCATAtgactgctctccctcatagggctcaa
aacgctaattagtccattttcaaactaagtggttgtataattttagagct
cccccattatggtggagagcgaccatttttggtggaaatgatattAAGGA
ATAGtagctaacatattttgaagtttagaagtacaacagatgactgctct
ccctcatagggctcaaaacgctaattagtcgattttcaaactaagtggtt
gtataattttagagctcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTT
TAtagctcccccattgtggtggagagcgaccatttttggtggaaatgata
cttaggaataatggctaacatattttgaagtttagaagtgcaacagatAA
CTgttctccctcatagggctcaaaacgctaattagtcgattttcaaacta
agtggttgtataattttatagctcccccattgtggtggagagcgaccatt
tttggtggaaatgatacttaggaataatggctaacatattttgaagttta
gaagtgcaacagatgactgctctccctcatagggctcaaaaccctaatca
gtcgattttcaaactaagtggttgtataattttatagctcccccattgtg
gtggagagcgaccatttttggtggaaatgatacttaggaataatggctaa
catattttgaagtttagaagtgcaacagatgactgctctccctcataggg
ctcaaaaccctaatcagtcgattttcaaactaagtggttgtataatttta
gagctcccccgttgtggtggagagcgaccatttttggtggaaatgatact
taggaatagtggctaacatattttgaagtttagaagtgcaacagatgact
gctctccctcatagggctcaaaacNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNcccattgtggtggagagcgaccatttttgtt
ggaaatgatacttaggaatagtggctaacatattttgaagtttagaagtg
caacagatgTCTGTTCTCCTTCGCAGAGGAAAAAAtcgaatatcaaactg
aatatcaaactgaatatcaaactaacttatttttaataaatattccaaac
tctaataagcggggggtatGGAATAATAGAgagagaggggggggggggga
tttGAAGACAGAATTTTTTTCAACTGATATGAATTTCAACTGAACACGTA
aaataagaaccaatactaacaaaaaggaaaattttaacaagtttaaggtc
tatctacactgtaataaaatattgaattattcgaatttaattagcggggg
gagggGTCTTAATTAGAGCGGGGgagatggattttttttttcttaacaat
tagcggggggacgtctattcgggagacaagagtaatttTACAAGAAGAAT
CTCAAATGTCTTGTCCATCCGAATTGAGAAGAATAGTTCTTTTTTTTACA
TATactccagctggcacacaacgttttttcgacgttcatctaacgttcac
atCACGACGCCcacataacgttagatgaacgctgaaacaacgttgtgtgc
cagctgggactcCTCAAGGAATCTTTTATTTCCTccaaattattcttatt
ttgcaATCAAAATTATCTAAACATAATCTCTTTTCAAGGTACGCCCATTC
CAAACCCACCGCCCGGTTGCCATGACTTTGAGTATTGGTGTCCAAGGATG
GCGGAATATGGAGAATGTGATTCAAATGAAGCTTTCATGAAAATGTTTTG
TAGAAAATCATGCAATCTCTGTCTTGAAGGTATACATTTAAACGGCCTTA
CACATtgttttttacgatttttgtaattatttttctaagaaatttggtgt
ttcAGGGACCCTGAAAGCCTGAAAATGCTAATAACttattgttcttaaca
ttttggtcatcgaagccttattcctacggattttcttaacttttcaagtt
ttaggcctaaaaattttcattaaataatttcatttttacggtttttgtaa
ttgtttttctaagaaatttggtgttttaggGACcctgaaagccttaaaat
gctaaTAACttattgttcttaacattttggtcatcgaaatCTTATGTAaa
atctcggtcaaaatatattgggaattttggttaattcctcgttttcagca
atttaaagttcgggcgaaaaagtcacttttgggcaaatttatAATCCAAC
CTAATCCAAcccgtccaacctaatttagagcgcttccaaattgtttgtag
ttgtaagatttcgtgggaatttcccttttttctcaaacttatgactttga
ttgtagttttctattataaaaaacgtgtattcgttAATAAACAAGACGAC
TCGAAAGTCGAACATTGTAAGACGAAATAGAGAAAATGCTTCGAaccttg
aaagtttgaaagggATAAGACTGAGAGATACTGAACGTAAAATAACGAGG
TCAAGCAGGAGGATATCTGCTGTACAACGACGTGTGAAACGTGATGCCTG
GAGTAAATTGTAAGGTCGTAGATagtattttactttttcatagagAACCT
GAATCCTATCCATAAAACATCATAAAGATTCCCTTTTGTAAGAGTAAAAA
AGGCTTCTATAGATGGCAAATCCTAATGCAATAttaaaatatgttaaaaa
aGCTCAACCAAGGCTTGGCCAAGACAAGATTAGGGGCTTTTATTTAGCAC
CAGTCACTCTTTTTCCCACCTGCTGTACCCCTATATATCAGGTTCGCGTT
GTATtgaacaatagagccattgtttggATATCAAAATGCGCAAATCATTC
TTGTGTTTTGTTGTTGGAGCATTATCTACTCTGTTGATGCATCAGACTGT
CGTGCTGTCGTGTTGGATGCTGAAAAGTATTATCAGATTACACTGCTCAA
AACTGTCTGGTGTTTGTCCAGTGTTACGTTACACAAATTCTTGACACTGG
TCGGTCAAACACcggacttttttcttttacccaGCAAGAGAGTGATTCAC
ATCTGGTCCCGTGTTAGGATTGTCCAGTGGTACAAAGTTTTCTTGTTTGA
CACCTGTCATTTTGTGTCCGGTGCTTCAGTATAGCCGCTGTGTTGGCAGG
GTCTTAGCCTTATTCAACCTGATATTGCGTCCTATGAAAACAAAGTTCTA
TTCcagatagaccttttgctagacaggatatcaaataataaattaataaa
CCAGCCTCAAAACAATGATTAGAAAAGTTAATGCCCAATTAAAATAATTA
TGTGCTATAATGTGGTCATTGTTTTAGTGCTGGAGTCTTTTAAACACCCT
CCCATTCGTTACAATCACGTGCTCGGTCCAGTTTTTCAGaggcaaaaatc
aaaaagtttgtggcTTGAACCTGGCCCGAATATCAATGACTTAGGGCTGA
AAATTGTTTGGGTTTAGTTCAGTTTCGGGTATTTGTGTCATGCATATGAG
TCGTTGTTCGGGCCATGTTGTGGGTCGTACCAATTCTGAAGGATTTGTAA
TAGACCCTATTGTTATTGCCTATAaacatagaggtataaagaaagacagg
agatgaatttgtcggtaattggtcgttaaggtcttttgatttcttttatg
taataaatcaaaagaaattctaggctcgcccgatgaaatacgacttttta
gtagaactcaagtttgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNatatgagattatgagcatgcgtacctcgtaat
ttttttaatcgtagggcgagcatggttacaatagcatacttctcctgttt
ctttatacctccatgctatAAATTATTggaatagttgttttggagaacgc
gacggccttttgaataacaaattactccacatactgtacattactttccc
tcagccaataaaaacgtgataaattatcttgtctctaggttactcatgta
cgtaaaattctactttagaccttacggaaagtcgttcgtaaggctgtctt
ttgggaatttccccgacattatgtAGAGATTTTGttaacgtaagcaaact
ctacagaaggtcttaaaacactacgtaagcttagggaaattcccactCTT
CAAGgccttaagtaaaattttacgtacatgtgaaaaaagctttatggagt
aattagttattcaattggccgtcgcgttctccaaaacaagTATTAGTAAT
GGATATCCAATCTGAACCTATTGGTTTTTGATTGGTCATCAATTGGAATA
AGTTATTAATTGTGTATTGAGCATTTCTTCTAAAAATCACTTAGTAAAAC
AGACTGTTTGACACagccaatagaccttttcgcctttgatGTAAtttata
ccgtaacttggtctaatgtcgacaccacTCCTCTAATTTTGACACTCTTT
TTATCaactgaaattgatagaaaggttgaaactgtttttctttgcttagt
ggtcagagaggaataatcctttttcaatcagtgattcaagctttcatatt
attcctgtctctaaagaagggtgtcggaattagatgaggggtgtcgatat
tagaccaacttacggtatgcaAGGAGGACCAAGAAGCCATTTTTCATATA
AATCATAgattgaaaaaaagataaatcatTTGGAAAATGACATCCTTTAT
ATGCAAAATTATGTATATAAATCTGTCTCGGCAATCTATGatttgcatga
aaaatggctGCTTGCATATAAATGACATAAAtggtgaaaaggtctattcg
tcTCACAATCAATAACTATGACTAATTGCTAAAAACATATTCTACCTGCG
TTTTGTATTGAAGGGTTCTGTTGTCAGTTGTGGTGTGTGGTGAAAAAGAA
GTCAAAAACTCTTTATTTATACTACTGAGCACTGTaaaatttattggtgc
attcactaactacacaaacataaaacacTAAGTAGTAAACGAATGacaaa
cctctttaaatactctacaagtTACCAGAAAACATAAGtagtaaaaatat
atacaacaGCCCGACAGTAACAACACAAAAACGTACAATTCGGTTTCACT
TCTGATGCATGAACTCTACATGCTGAGCTGCTTATCAAAGACACCATCCA
GAGATACAACCACAATGGTTCCGCCGTGTATATTGACGCAGAAAAAGCAT
TCGACACCTGCAACTGGTACAAACTTTTTCAGTCACTACAACAAAAAGGA
ACCCTACCGGACAAAGTGATTAAATCCTTGATACAGCTATATCTTAACGG
GAAAGGAATGATAAGATACCATAACGCATACTCGGATACTTTCAAATTAT
CCCAAGGTGTACGACAAGGATCGATTTTGGCACCATTTTTATACAACCTA
TATACTGAAGACCTCATTGACAGAATTCAAGACTTAAATATCGGAAAATT
CCTACCAGGAGATATTGTCAAGCACCTTCAACGACTCTTGGACACCTGCC
TGATCTACGGCAAAGAGCACGCCATAAAATTCAACGAACAAAAAACACAG
TTTGTCATTTCGGGGCAAAGTCCAATATCGAATCCGTACCTCACAATAAA
CTCGTCATTCGTTACAGTAAAATCGGAAATGAAGCACCTGAGATTCAATT
GGGGAACGAAAAGGAATGCATTATCTTGACAGACGCAAAGAATCCAGACT
TTCAGAACTGTGGGCAACTACAACCTCCTTATTATCAAGCGGAGTCAGAT
GGTatcaccatagtataagaaagccgcggctggaatgataacatctgaat
ttctgttgttctatctctgtcgtattagatgactatttgttgatcaagaa
gtcaacactaagaaatttaaacaagcacaaaatggctaagctgaaagaac
tcaaaaattaatgatgtgcctcgaaatgccttgacaatatttcagtgaaa
tctttttagaaatcaatgaaaaaatacatcaagagaatactgtgaaaatt
tcaaaccagcaccttcaaaatatatcatttaaactgacaggaaagttgtc
atcttgaatatagttcttataatttcgattttggcgaaaaactattgttt
ccacaaaatacctctaaaatatgtccaaaattagttcaaatgttctattg
ggtacatattcaaagatatctagcaacaaaaaaactttttgtgaaggaaa
ataagagaaaaatttcaaaaactatctaccaataataaactgacaatctt
gatgttcttataaagctcggagacagagatggaacagcaatttaactgaa
aagacGATGcagtacatattccagccgcggctttcatATACTATGGTATC
ACCCAAGCACCACAGCCTACGTGTTTTGATCAATCATTGTCCCCAAAGTG
TTATATGGCGTCGAAATATTGGACATCAACAGATACTTCGAGACTTTATT
GAACAAACAGTGCAGAAATTCCCTGAAAACTCTATGGGGGATCTCCAAGC
ACTATATaaatgacctgaaatcttttttcaaatttatcgtTCGACATCAA
ATCCAGGAAAATAAAGTTCCTCGTGACGAATGAAATCACGAGAAAAtact
cgggtgaaacaaggcatgtccaaaataaattttgcgTGACGTGCATCGCT
TCCCGTTATCCCTTAACTTTCATATAAAGCTCAAAAGAATCGTCTCAACG
AGagaatttcgaaaagtgctgggtgaaaaatttatattaagcctatctca
agatatcggccaaaaacggattttgacgttatgaagTACAttgaaaaaac
acgtcaaaaagaaaatttaaacgaAGTCATTATTGAAAAAGGGCGATAAT
TCTGATTAACTCACtacaatcaaagcaaaattttgactgtagattttgat
tatttattctgaaatatttcatgaaaaaaattgaaaattcatgatgacgt
cagcattatttgacgtatttaaaatttttcccgacaacaaatgacgtcat
ttaaatagTCTGAAATtcttttaacaaatatttcagaatcgttaatttac
aactccagtcaaaatttggtgttgattgcattaatagaattgaagttatc
gccgtttttcaataatgacgtcatttgaatcttactcatgacgtgttttt
tcgatgtattttaaaacgtcaaaatcattttttgaccgATATCTTCAGAT
TGACTTAATGTAAAATTTTGACCCAtgacttttcgaaatcctctcgttga
tacgattGTTTTGAGCTTTATATGAGAGTTaaggaataatgggaagcgAT
GCGCGTcgcgcaaaatatatttgggacgtGCCTTGTTTCACCCAAGTACC
TCTTTGCACTGTTATCGTTATCGATCATTCTCCACGCTTCAGACAACCTT
CGACATCGCAATGCAAATAAAGCCATTTTCCATATTGAATTTGATGGACT
ATGGGATCATGTATAAAAGAATGCACGCAAAAAATCTCCGCATAATTTGT
CACACTCTCTCGTCCCTTCCCAGCcggcaaaaaaacgtttaaaaacgttt
aaaaaacgtttttcacaacgtttggaaaacgtttttttcaggttgtattt
GTCGCACTTTACAACGTTTTTTCACAACGTCAAAAAAACGTTNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGCATTTTCAGTTTAATGTAAACTACTTACA
TTATCtagttgatttttgtaaaagaagttTCTTCCAGTCTTCGTGCATGA
AACATCCAACTTTTACAGAACCTTTACTTTGTTTGATCATaggtttgatt
ttgttttgaactacaagtgatttcgaattcgaacgtttgaacgttcgaac
gttcgaaagctGTCCAGAAAAGAAGCCATTCCATTGTTAATTCGGCGGAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCGGGTGGGCGATCTTACGAGGTATTCAAACAGGGAGTGGgcg
ttttattaaaatatatttaacacttaaagagaagtcaataaagtaaaaga
gaaaaagatataTTGAATATCTCTCCTATATCTCAGAGCAGGTAGGTAAA
GTCTCAGGAATTTTCTTGGGATAAAAGCTGAGAGTCGATGaggttatatt
tatatatttcaaataGAAATCTTGGGCACTACACTTTCGtctcaaaaaaa
cgttttataaacgtttaaaaaacgttgatcaaaatcacgtttaaatcaag
tttagaaaaaacgtTTCTTAAACGTTGTTAGCAAAACCTTTGAAAAACGT
TTGGATTGTAACGTTTCAACAACGTTTTATAAACGTTATGAAAAAACGCG
TTTTCTCTACAACGTTGAAAAAACGTTTTTAAAACGTTTTTTGGCAACGC
GTTTTTTCACAACGTAATCTAAACCTAaaaaaaacgttttgaaaacgttg
tgtgccggctgggtgtATACTCTGGGAGCGATAGAAATTACATCATTTAA
ACAATATTACGTACAATATGGATGGCTCCTTTACCACATATCCTCCAAAC
TGTCTTTATAGAAACatatcaatttcattttgattttatttctcTTTCAT
ATTCAGCACCTCCATGTTACGACAAAGACGAATTATGTTCCGATTTTGCC
AGAGATGGGATGTGTATGTTGGAACCAGCCTATATGACGCAATTCTGTCA
AAAATCTTGTGATTTCTGTATCAAACGTAAGTTaaattcatgacgtaatg
ttttctacggaaacatCCCGGTTTGTACCAGAAGTTGCAAATTTAAGCTA
GAAAAAGATTGTttcaaatttgccactactggcaaaaacctaGCCTATAC
TAAACGTCACCCGtgtttttctacgcaattagcGTCTAATCCACTTTGCg
accaggttttcgggctccaagCAGTCGACTTTTttacgtcactttaaact
tctGAAGCCCTTCCAGTAgggaaaaatcgaatttgcgtcaaaacacttga
aagacttctatttttcaaaaatcgtcaatcaagtggaactcactaagaaa
cgagatgaaaaataccggtttttagtgaggtgctcgcttgcaaaaacacc
aggatgtttccataaaaaaaaaaacattacggAATGAATGTATATGAATT
TATTATTGTTCTTTTGGCGCTTCATAGTCACGTGATGTCAGACTTTAAAA
AGGGCGGCTGTCCGAAGCTATTCACAGGTTGTTAGATTGTTACGAAAACC
GCCCACCCGCCCACTGGTTAAGCTATTACGTCGTTACAGTCTATCTAATT
TCGAAGAGTCTAGTCTTTGACCACTTTAGTGCCATAGTGCCATAGTCTTA
ATGTATTACTACATATATTGGATTATATGATATTGATTTATAAAGAAGTG
TTATTGTCAATAGCATTTATAAATATACATTTATATTTACTTTATTATCT
TGCACATTGTACACTTTCTAGACGACCCACTAACTGACTAACGTGATAAG
AGGAGATGAaagtaaaatgataaataaagttattttcgttTGAGTTTACG
AATTAGAAAATAACATGAATTCATTTTTCAGTTCTGAACAGTTTTATCAT
CCATTATGACTGATGAGATTGGAAAATTATTCCCCATTGTTTTTTACAAC
AAAAAAAGCGAGCTTAAATCACACGCTAACTGTCTAAaatatttgatttc
ttttagcGACCTTCGCACCCAAGAACATATGTGAGGATAAAGAACCAGCA
AAATGCGCTCAACTTTTTATCAAACAAGCACCACACAATCCTTGTACTTA
CaatggtgaaaaaagaaaatggttATCAGAAAATTGTCGCAAATCATGTA
AGATGTGTGCTAAAACGGGTGATTGTTTCGACGTAGATGCAAGTTGCCCG
TATAATTCACAATATACGGATTATTGTACAAATAAGGATTCAAGATATCA
TACATGGATGTTAGAAAAATGCCAATATTCATGTGGACTTTGCAAGGATT
AAAGGaagtttgaatgaaattttgaaaatcgaaaaaatgtaATTCTATGG
GTGATGTTTCTTAAATTCTGGATCCGTTAGTGGTCAAGGAGCcagtttat
cttttttctttcgagTAGTCCCATCCTGAGAAATTTAAAtgcgtttttta
tattttcccgGTCTGAATTTACTTTTATAACTTTTTCAGTACTGCACCAG
CCTGAATATTGCTCACGTTTAAGATAATCATATTCACTGATAAAAGAGCT
TTCTAGCGGACACCTTTTCCTTCACCCAAAGCAAAGAAATTCTAACATat
tcatacacgctttttttatataagaatacactttataagaatgtccatga
tgaaaatggc

Coding sequence (CDS) from alignment at sc0000180:403353..422012+

>TCONS_00014048 ID=TCONS_00014048|Name=TCONS_00014048|organism=Clytia hemisphaerica|type=CDS|length=2784bp|location=Sequence derived from alignment at sc0000180:403353..422012+ (Clytia hemisphaerica)
GCCAAGATGAAATGTAAAGACCATCCAAAGATGTgtgattattatttttc
acGAGGATATTATAACGATTGTGCTATTGGAGGTGTTAAATGGTATTTCT
GTCCTGACTCCTGTGGATATTGCGAACTCCTTAATGCTGGTACGCCCATT
CCAAACCCACCGCCCGGTTGCCATGACTTTGAGTATTGGTGTCCAAGGAT
GGCGGAATATGGAGAATGTGATTCAAATGAAGCTTTCATGAAAATGTTTT
GTAGAAAATCATGCAATCTCTGTCTTGAAGCACCTCCATGTTACGACAAA
GACGAATTATGTTCCGATTTTGCCAGAGATGGGATGTGTATGTTGGAACC
AGCCTATATGACGCAATTCTGTCAAAAATCTTGTGATTTCTGTATCAAAC
cGACCTTCGCACCCAAGAACATATGTGAGGATAAAGAACCAGCAAAATGC
GCTCAACTTTTTATCAAACAAGCACCACACAATCCTTGTACTTACaatgg
tgaaaaaagaaaatggttATCAGAAAATTGTCGCAAATCATGTAAGATGT
GTGCTAAAACGGGTGATTGTTTCGACGTAGATGCAAGTTGCCCGTATAAT
TCACAATATACGGATTATTGTACAAATAAGGATTCAAGATATCATACATG
GATGTTAGAAAAATGCCAATATTCATGTGGACTTTGCAAGGATTAAGCCA
AGATGAAATGTAAAGACCATCCAAAGATGTgtgattattatttttcacGA
GGATATTATAACGATTGTGCTATTGGAGGTGTTAAATGGTATTTCTGTCC
TGACTCCTGTGGATATTGCGAACTCCTTAATGCTGGTACGCCCATTCCAA
ACCCACCGCCCGGTTGCCATGACTTTGAGTATTGGTGTCCAAGGATGGCG
GAATATGGAGAATGTGATTCAAATGAAGCTTTCATGAAAATGTTTTGTAG
AAAATCATGCAATCTCTGTCTTGAAGCACCTCCATGTTACGACAAAGACG
AATTATGTTCCGATTTTGCCAGAGATGGGATGTGTATGTTGGAACCAGCC
TATATGACGCAATTCTGTCAAAAATCTTGTGATTTCTGTATCAAACcGAC
CTTCGCACCCAAGAACATATGTGAGGATAAAGAACCAGCAAAATGCGCTC
AACTTTTTATCAAACAAGCACCACACAATCCTTGTACTTACaatggtgaa
aaaagaaaatggttATCAGAAAATTGTCGCAAATCATGTAAGATGTGTGC
TAAAACGGGTGATTGTTTCGACGTAGATGCAAGTTGCCCGTATAATTCAC
AATATACGGATTATTGTACAAATAAGGATTCAAGATATCATACATGGATG
TTAGAAAAATGCCAATATTCATGTGGACTTTGCAAGGATTAAGCCAAGAT
GAAATGTAAAGACCATCCAAAGATGTgtgattattatttttcacGAGGAT
ATTATAACGATTGTGCTATTGGAGGTGTTAAATGGTATTTCTGTCCTGAC
TCCTGTGGATATTGCGAACTCCTTAATGCTGGTACGCCCATTCCAAACCC
ACCGCCCGGTTGCCATGACTTTGAGTATTGGTGTCCAAGGATGGCGGAAT
ATGGAGAATGTGATTCAAATGAAGCTTTCATGAAAATGTTTTGTAGAAAA
TCATGCAATCTCTGTCTTGAAGCACCTCCATGTTACGACAAAGACGAATT
ATGTTCCGATTTTGCCAGAGATGGGATGTGTATGTTGGAACCAGCCTATA
TGACGCAATTCTGTCAAAAATCTTGTGATTTCTGTATCAAACcGACCTTC
GCACCCAAGAACATATGTGAGGATAAAGAACCAGCAAAATGCGCTCAACT
TTTTATCAAACAAGCACCACACAATCCTTGTACTTACaatggtgaaaaaa
gaaaatggttATCAGAAAATTGTCGCAAATCATGTAAGATGTGTGCTAAA
ACGGGTGATTGTTTCGACGTAGATGCAAGTTGCCCGTATAATTCACAATA
TACGGATTATTGTACAAATAAGGATTCAAGATATCATACATGGATGTTAG
AAAAATGCCAATATTCATGTGGACTTTGCAAGGATTAAGCCAAGATGAAA
TGTAAAGACCATCCAAAGATGTgtgattattatttttcacGAGGATATTA
TAACGATTGTGCTATTGGAGGTGTTAAATGGTATTTCTGTCCTGACTCCT
GTGGATATTGCGAACTCCTTAATGCTGGTACGCCCATTCCAAACCCACCG
CCCGGTTGCCATGACTTTGAGTATTGGTGTCCAAGGATGGCGGAATATGG
AGAATGTGATTCAAATGAAGCTTTCATGAAAATGTTTTGTAGAAAATCAT
GCAATCTCTGTCTTGAAGCACCTCCATGTTACGACAAAGACGAATTATGT
TCCGATTTTGCCAGAGATGGGATGTGTATGTTGGAACCAGCCTATATGAC
GCAATTCTGTCAAAAATCTTGTGATTTCTGTATCAAACcGACCTTCGCAC
CCAAGAACATATGTGAGGATAAAGAACCAGCAAAATGCGCTCAACTTTTT
ATCAAACAAGCACCACACAATCCTTGTACTTACaatggtgaaaaaagaaa
atggttATCAGAAAATTGTCGCAAATCATGTAAGATGTGTGCTAAAACGG
GTGATTGTTTCGACGTAGATGCAAGTTGCCCGTATAATTCACAATATACG
GATTATTGTACAAATAAGGATTCAAGATATCATACATGGATGTTAGAAAA
ATGCCAATATTCATGTGGACTTTGCAAGGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007859XLOC_007859Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014048-exon-sc0000180-1491911889:403353..403493TCONS_00014048-exon-sc0000180-1491911889:403353..403493Clytia hemisphaericaexon
TCONS_00014048-exon-sc0000180-1510915933:403353..403493TCONS_00014048-exon-sc0000180-1510915933:403353..403493Clytia hemisphaericaexon
TCONS_00014048-exon-sc0000180-1575043694:403353..403493TCONS_00014048-exon-sc0000180-1575043694:403353..403493Clytia hemisphaericaexon
TCONS_00014048-exon-sc0000180-1491911889:411541..411681TCONS_00014048-exon-sc0000180-1491911889:411541..411681Clytia hemisphaericaexon
TCONS_00014048-exon-sc0000180-1510915933:411541..411681TCONS_00014048-exon-sc0000180-1510915933:411541..411681Clytia hemisphaericaexon
TCONS_00014048-exon-sc0000180-1575043694:411541..411681TCONS_00014048-exon-sc0000180-1575043694:411541..411681Clytia hemisphaericaexon
TCONS_00014048-exon-sc0000180-1491911889:420259..420378TCONS_00014048-exon-sc0000180-1491911889:420259..420378Clytia hemisphaericaexon
TCONS_00014048-exon-sc0000180-1510915933:420259..420378TCONS_00014048-exon-sc0000180-1510915933:420259..420378Clytia hemisphaericaexon
TCONS_00014048-exon-sc0000180-1575043694:420259..420378TCONS_00014048-exon-sc0000180-1575043694:420259..420378Clytia hemisphaericaexon
TCONS_00014048-exon-sc0000180-1491911889:421359..422012TCONS_00014048-exon-sc0000180-1491911889:421359..422012Clytia hemisphaericaexon
TCONS_00014048-exon-sc0000180-1510915933:421359..422012TCONS_00014048-exon-sc0000180-1510915933:421359..422012Clytia hemisphaericaexon
TCONS_00014048-exon-sc0000180-1575043694:421359..422012TCONS_00014048-exon-sc0000180-1575043694:421359..422012Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014048-proteinTCONS_00014048-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000180supercontigsc0000180:403353..422012 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.168084	0.204857	0.19006	0.186877	0	0	0.32532	0.101739	1.3092	0.131605	0.297222	1.28979	19.7632	36.672	0.0239187	0.0514026	0.189048	0.0970888	46.851	42.7024	0.0810487	0.299008	0.0963824	0.0876195	0.404792	0.564836	0	0	0.0938869	0.190264
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003582ShKT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014048 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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