TCONS_00014022 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014022
Unique NameTCONS_00014022
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length337

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014022 ID=TCONS_00014022|Name=TCONS_00014022|organism=Clytia hemisphaerica|type=transcript|length=337bp
CCGATGTATCATATGGTCCTATGGAATACCGCCTGACAAAGCTAACGAAA
GAGGAAAAACACCCTGAAGTTACATTTATACCAGAAGTTTGTTTTAACCC
AAGTATTTTCCTTAGTAGAGTCTTCGTACTGCACCCTCAAGATCCGGAAA
AATACCTGGAGCTAAACCCAACTGTTAGAAAATCACTCTTCAAATCTATA
AAGTCGATAATGTCAAAAATAGGTATTCAGGAACCTTCGATGCCCCAAGG
TGGTCAAGAATCTTGGACTTTTGATAGGTTAACCGAAGATTATTATAAAG
AGTTCAATGGACAAAATAACTTGATTTTATGTGCAAG
Run BLAST on NCBI

protein sequence of TCONS_00014022-protein

>TCONS_00014022-protein ID=TCONS_00014022-protein|Name=TCONS_00014022-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
DVSYGPMEYRLTKLTKEEKHPEVTFIPEVCFNPSIFLSRVFVLHPQDPEK
YLELNPTVRKSLFKSIKSIMSKIGIQEPSMPQGGQESWTFDRLTEDYYKE
FNGQNNLILCA
Run BLAST on NCBI

transcript from alignment at sc0000175:315067..315403

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014022 ID=TCONS_00014022|Name=TCONS_00014022|organism=Clytia hemisphaerica|type=transcript|length=337bp|location=Sequence derived from alignment at sc0000175:315067..315403 (Clytia hemisphaerica)
CTTGCACATAAAATCAAGTTATTTTGTCCATTGAACTCTTTATAATAATC
TTCGGTTAACCTATCAAAAGTCCAAGATTCTTGACCACCTTGGGGCATCG
AAGGTTCCTGAATACCTATTTTTGACATTATCGACTTTATAGATTTGAAG
AGTGATTTTCTAACAGTTGGGTTTAGCTCCAGGTATTTTTCCGGATCTTG
AGGGTGCAGTACGAAGACTCTACTAAGGAAAATACTTGGGTTAAAACAAA
CTTCTGGTATAAATGTAACTTCAGGGTGTTTTTCCTCTTTCGTTAGCTTT
GTCAGGCGGTATTCCATAGGACCATATGATACATCGG

Coding sequence (CDS) from alignment at sc0000175:315067..315403

>TCONS_00014022 ID=TCONS_00014022|Name=TCONS_00014022|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0000175:315067..315403 (Clytia hemisphaerica)
TGCACATAAAATCAAGTTATTTTGTCCATTGAACTCTTTATAATAATCTT
CGGTTAACCTATCAAAAGTCCAAGATTCTTGACCACCTTGGGGCATCGAA
GGTTCCTGAATACCTATTTTTGACATTATCGACTTTATAGATTTGAAGAG
TGATTTTCTAACAGTTGGGTTTAGCTCCAGGTATTTTTCCGGATCTTGAG
GGTGCAGTACGAAGACTCTACTAAGGAAAATACTTGGGTTAAAACAAACT
TCTGGTATAAATGTAACTTCAGGGTGTTTTTCCTCTTTCGTTAGCTTTGT
CAGGCGGTATTCCATAGGACCATATGATACATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007841XLOC_007841Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014022-proteinTCONS_00014022-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014022-exon-sc0000175-1491911889:315067..315403TCONS_00014022-exon-sc0000175-1491911889:315067..315403Clytia hemisphaericaexon
TCONS_00014022-exon-sc0000175-1510915933:315067..315403TCONS_00014022-exon-sc0000175-1510915933:315067..315403Clytia hemisphaericaexon
TCONS_00014022-exon-sc0000175-1575043694:315067..315403TCONS_00014022-exon-sc0000175-1575043694:315067..315403Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000175supercontigsc0000175:315067..315403 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.333603	0.467126	0.289306	0	0.922958	1.84335	0.957168	0.157384	0.337795	0	0.213263	0.589269	0.616627	0.535961	0	0.317794	0.288921	1.48791	2.12468	0	0	0.307633	0.31343
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014022 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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