TCONS_00014007 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014007
Unique NameTCONS_00014007
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length757

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014007 ID=TCONS_00014007|Name=TCONS_00014007|organism=Clytia hemisphaerica|type=transcript|length=757bp
gttggaattaaatcagagatgtcgacattagaccaagttacggtacaaTC
GGTGATTCAGCTTTGTCTGGTATTTCCATACTATAAGGCGATACAATTTT
CCAATCTACATAGTTATGGGCTACCCCTTGCCATGCGTACGTATTCACAG
GCGAGAATGTTCTATCTAGAAGCCTCCTAGTGTCAGGTGTTCTTGTACGC
GCATATTTTGAATCACTAAGACGGGAACATAAACTGTTGATATCTTTATT
TGTTAGTTTCTTGTTTCTCTCTATATGTACTTTTCTGTTGATTTCACGTT
CTTTCTTATGCTTTGGGGTAGACATTCGATTTAAAAAATTCTCCATTTCT
CCAAGCGTTTTTTGTGTGCCTCGGGCGGGTGTGGGCGAAGGGTGTCGATT
CAAGGGGCGTGATACTCGAAGGNGGTGTGCCTCGGGCGGGCGTGGGCGAA
GGGCGTCGATTCAAGGGGCGTGATACACGAAGGTTTATTCGATTCAATTC
ATCTTTGCATTTTATCGAGCTATTGTTCGATGATTTAATCGATTCGTATC
CGATTGATGTTTGCTGATGACGACTTAATCTATTCGAGATATCGATCAGT
TCATCTTTCCGATACTTCCGTTTGTTTGTTTCAACCGAATGGTTTTGATG
ATCGATTTTGTATCGAGTAGAATGTATGTTATAGACGCCCTGTTTGGGGC
GTGATAATCGATTGATTTGTGTTAAATTCatctttttattatttctttac
TTCTACT
Run BLAST on NCBI

protein sequence of TCONS_00014007-protein

>TCONS_00014007-protein ID=TCONS_00014007-protein|Name=TCONS_00014007-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
MNLTQINRLSRPKQGVYNIHSTRYKIDHQNHSVETNKRKYRKDELIDISN
RLSRHQQTSIGYESIKSSNNSSIKCKDELNRINLRVSRPLNRRPSPTPAR
GTXPSSITPLESTPFAHTRPRHTKNAWRNGEFFKSNVYPKA
Run BLAST on NCBI

transcript from alignment at sc0000175:18869..19625

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014007 ID=TCONS_00014007|Name=TCONS_00014007|organism=Clytia hemisphaerica|type=transcript|length=757bp|location=Sequence derived from alignment at sc0000175:18869..19625 (Clytia hemisphaerica)
AGTAGAAgtaaagaaataataaaaagatGAATTTAACACAAATCAATCGA
TTATCACGCCCCAAACAGGGCGTCTATAACATACATTCTACTCGATACAA
AATCGATCATCAAAACCATTCGGTTGAAACAAACAAACGGAAGTATCGGA
AAGATGAACTGATCGATATCTCGAATAGATTAAGTCGTCATCAGCAAACA
TCAATCGGATACGAATCGATTAAATCATCGAACAATAGCTCGATAAAATG
CAAAGATGAATTGAATCGAATAAACCTTCGTGTATCACGCCCCTTGAATC
GACGCCCTTCGCCCACGCCCGCCCGAGGCACACCNCCTTCGAGTATCACG
CCCCTTGAATCGACACCCTTCGCCCACACCCGCCCGAGGCACACAAAAAA
CGCTTGGAGAAATGGAGAATTTTTTAAATCGAATGTCTACCCCAAAGCAT
AAGAAAGAACGTGAAATCAACAGAAAAGTACATATAGAGAGAAACAAGAA
ACTAACAAATAAAGATATCAACAGTTTATGTTCCCGTCTTAGTGATTCAA
AATATGCGCGTACAAGAACACCTGACACTAGGAGGCTTCTAGATAGAACA
TTCTCGCCTGTGAATACGTACGCATGGCAAGGGGTAGCCCATAACTATGT
AGATTGGAAAATTGTATCGCCTTATAGTATGGAAATACCAGACAAAGCTG
AATCACCGAttgtaccgtaacttggtctaatgtcgacatctctgatttaa
ttccaac

Coding sequence (CDS) from alignment at sc0000175:18869..19625

>TCONS_00014007 ID=TCONS_00014007|Name=TCONS_00014007|organism=Clytia hemisphaerica|type=CDS|length=426bp|location=Sequence derived from alignment at sc0000175:18869..19625 (Clytia hemisphaerica)
atGAATTTAACACAAATCAATCGATTATCACGCCCCAAACAGGGCGTCTA
TAACATACATTCTACTCGATACAAAATCGATCATCAAAACCATTCGGTTG
AAACAAACAAACGGAAGTATCGGAAAGATGAACTGATCGATATCTCGAAT
AGATTAAGTCGTCATCAGCAAACATCAATCGGATACGAATCGATTAAATC
ATCGAACAATAGCTCGATAAAATGCAAAGATGAATTGAATCGAATAAACC
TTCGTGTATCACGCCCCTTGAATCGACGCCCTTCGCCCACGCCCGCCCGA
GGCACACCNCCTTCGAGTATCACGCCCCTTGAATCGACACCCTTCGCCCA
CACCCGCCCGAGGCACACAAAAAACGCTTGGAGAAATGGAGAATTTTTTA
AATCGAATGTCTACCCCAAAGCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007826XLOC_007826Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014007-proteinTCONS_00014007-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014007-exon-sc0000175-1491911889:18869..19625TCONS_00014007-exon-sc0000175-1491911889:18869..19625Clytia hemisphaericaexon
TCONS_00014007-exon-sc0000175-1510915933:18869..19625TCONS_00014007-exon-sc0000175-1510915933:18869..19625Clytia hemisphaericaexon
TCONS_00014007-exon-sc0000175-1575043694:18869..19625TCONS_00014007-exon-sc0000175-1575043694:18869..19625Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000175supercontigsc0000175:18869..19625 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.227267	0.189396	0	0	70.1383	49.4158	25.2329	28.349	8.07918	12.868	5.41149	2.9036	0.100864	0	0	0.039451	0	0.12539	0.275282	0	0.0625947	0.123103	1.78624	1.54908	0.74807	1.22665	30.7562	20.5049	0.63365	0.119268
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014007 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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