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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013968 ID=TCONS_00013968|Name=TCONS_00013968|organism=Clytia hemisphaerica|type=transcript|length=413bp
CTTTGAAATTGGTTATATACTATCCACTatccactgaaaaaaaattcgaa
gtTTAACATTGGAGGATTGGTTTGATCTATAATCATCAGAAATTTATGTT
GGCAGAACAACGCAAAACTGTGTTACCTTTGTGAAAGAATGGATTGAAAT
ATAGACATTTCCTGATCGCAAATCCAACATGGCGTCTTCGCAGTCCTCGT
CTACTTCAACATGTGGCTCGCCCGAACAACCCTCCatcttcaaaaataat
ttccatCATGGTCGTTCGTTCGAAACACTAAACGTGATGCGTGAACAACG
TGTTTTGTGTGACGTCACGGTCCGTGTTGGGTCAAGAGAGATCTTAGCTC
ATAGATCAGCCTTAGCAGCGGCGAGTCCGTATTTCTACGCCATGTTCACA
GTCGAGATGAGCG Run BLAST on NCBI transcript from alignment at sc0000175:447991..455316+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013968 ID=TCONS_00013968|Name=TCONS_00013968|organism=Clytia hemisphaerica|type=transcript|length=7326bp|location=Sequence derived from alignment at sc0000175:447991..455316+ (Clytia hemisphaerica)
CTTTGAAATTGGTTATATACTATCCACTatccactgaaaaaaaattcgaa
gtTTAACATTGGAGGATTGGTTTGATCTATAATCATCAGAAATTTATGTT
GGCAGAACAACGCAAAACTGTGTTACCTTTGTGAAAGAATGGATTGAAAT
ATAGGTATGTAACAAGATCGTattatgtaatcacatgataacgagtgcaa
ttcgagaataattgcacgagtgatttttttgttattaattttccgagtcc
gaaaggacgagcgcggcatcgaagagtgtgattaacgattaattattgct
ctctttgaaggcgcgccaaataagaaaaataactcatcgtgcgattatat
TAGTATTATATAATGATCTACTGTACTTAGTGCCCCACAAGAaagtttaa
ttttcaaattcatttttcataaattctaacaaattcagcaaaataatttt
tttttgcattagaaagaggaaaaataaaCTTGAATTTGATGGTCATAATT
ATCAAATTTAAATTCAGTGTAAAAATGTTATGATCAaaagaatgaaattt
caaaGGATTTAAAAGCTGCAAAATCGACCTTAAATTTTTATTAAGAAATG
ACAAATGGGGAAAACGATAACAAGCTTTTGCATGAAAAGGAGGTGTTTTT
TTTGTAGCAAACTACATTAAAAAGAAGAAGCAAGCATCTCAGCAAGCGAA
ATCCCTATCatgtatcaaattttaatgagATGTTTTTTCCTTCAGAATTA
TACTTTAATTCATAGTTTATACCATTTTAAAATCAGAATAAAACCCATGT
AATTGCAGGAAATGCATATCTGAGTTATTTTCAGGGAATCATCAATcaat
ttgattggtcaaaaTGGTCACTTTTGATGATTTGGAACACTTTCTGATAA
TAAATGTTCCAtcctttatttttcatgaattatgATCTACTTTACTGTac
ttcatcaaatttgatttttaaatgaaccatcaaaatttaaattaaattct
TTCAGATTTAAAACAAATCCattctttaaatattttgtagaACTTGAATC
TAAAGTGTGAATCTTTCTTGTGGTTCAGCCGGTATATActttccatttta
atttaagGAGTGGCCACACCTTCTCATGATTAATTCCCCTAGAAAAAACG
TCGTGTTTCCCATGCCACTGGGAAACTTCAGCTTTATTAACTCAGAAGAG
GTTAGAGCAGAAATTGAACTTTCAGAATAGAATTTCAGAATAACTTGACA
CAAAGATTCCTTTAAGAGTCCAAGAGCACCCAAATGTTTTTGACCCTTTT
TGGGACATTTTTATGATGATGTCAATTTTCAGTACAAACCCCTGCAAGAA
AACTTCTGAAGTCCCAGCCCAGACTCAAGATGATTTTGACCTGTTCTTAG
ATTTTGGCCAACTTATCAGCCCAATAAAGGTTGTTCTTATCATTAAAGCC
AAATTTCTATAACCAAGTGTTACAAAAACTGTCAGATGTGTGACGTAAAG
CTTATTAAAAACGATTAAAAAAACTCTAGACACAGTGTTTTTTATAGAAA
GTTTTATACAAATAACGTTTTAAATTCTGAGATATATTTTATACATCAAC
TATTACTCAAACTAGTAAATTCAGTTTTGTCAGGTTTTATAACGATTTCT
GATTATATACTATTTataaattcttttatttgaattcAAAGTGGCagcaa
ttttgttttgtttcttcttgTTGCCAtggattttgattgtttttgttgtt
ttgttttttaataaacaCAAAAACACTTGTAAAGATGCTTCTAAGAAGGT
AACTTGTTATCTCTTTTTATACAAACGCAAGAGCATTCCCATGGGCCCTG
TCAACGGGCAAAGCCCCTCACCCACTTCTCACATTGAAACTTATGTACAC
GCTTTGTAAATCCATTTAACACAACTCACACTTTGGAAAGGATACGAGAA
TGGTTTTAATTGGTCGAAATGCCGGCaccgaactatggtctacttcatag
atttataaagctcgaagggctagattgcgtacttttgctgaaaagtgtgc
cgtggttaggtaggaaatcccaCCTAGGTCACGTGGtggcgcttgaccaa
tcagaagcttcgcaggttttcgaaaacaatattttttctgatattcactt
ttttgcttgtgatggcttaaagcacgacatctagccctttgggctttata
gATCTATGGTCTACTTTCAAAGATTATGCATTATTTTGCTGCAggcaggg
agaaagagtggtctTGTGTTTTATAACATATCTGGAGTTTTTCCCCTGTA
TGATCTTAAACAATAAAgattttacacgtttttttataagaacaaactat
ataagaacataagacttcggtggccaaaagttaagaacattttaaggctt
tgtacaCATctaaaggctttaaaaattttggatgttcttataaaaaacgt
gtatttttcaAAGTGTTTGTCCAAACTTCAAATTCACAGTGAtgtaattt
atttattcattactcagtattgctccacaacagggtttcattttttatat
aattcatttaaaaagaaaacttcttccgacaaagaaattttgaaaataaa
agtttataCAACGACACAGCATGTATCTTGtttcagagaaaaatattttt
ttcatttttcaatttaaatattgaaaaataagatTATCATATTCACTTTT
TGTCTTTCTTAGACTAGGTTTTCCTTGACTCCAACATTTTCTGTTTTGAA
AAGTGGAAGACTTAACATGCAAATTATATGACATGATATAATGCTTTATG
TAATGCTACTCAAAGTTAAAAGAGAGTTATATCAAAACAGATATTTAGAG
TTTTTAGAACgtttaaacttttttatataGAAGAGAAATGATTTCTTTTG
CTAGTTTTCTCAATGTCTGCTTTTAACCTATGAAGGTTAACCTTTCTTCT
CTTCGGCATCATAAGGTTGAGTTTAAATTGGCATATTGTTTGATAGAGAA
GAATCATTATTAGAAAGAATAATGAGAGAAATACGATCTTATATCGTTTC
ATCAATTAATCGAAGAAATTCAACATCGAATCGAAGATTTGTTTCTTGCG
ATGATTTATTACTTGTAAGTAATACACAtggtttatttgaaaaattgttt
ataGTCCTATGCTTTTAacatggcatggaccaggggtttaggtaccccta
agaaaataggtaccccctgaattttaggtacccccaaacaacagacgtta
gtagctaccccctgtgattggtacACCCCGTGACTTGAGTATACaggtca
agaaatgaaaaatttgtatatttttacaattaaaaagaataatgatagtt
cgataaaagcaagataaagTATAGTTCCCGAGCCCGCAGACCTTACTGCA
TAAAAGTCAGATACCCCCAGAGgtcataggtaccccctgaaattaaaaaa
aaatccagcccccagtctttttcaggaagattttggttgtagCCCCCCCC
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNggggggggggggggggggttcatgccaTGTTTA
ATATGATTAAGGCTTTAGGAACACGAgcagttttttttcttcgcgttggt
gcaatgcaacatgctccatcctaCCAActtgaaacgctttctcgtgtctc
caccccatttttctttctaccaataaaagcgAAATCGACAacacttttaa
taacatttgtgtgtctctcacttttgttttcactcatattttgtcccatg
aaacaaaaagaaagaaaccatgggacatacacttttttcttgtggtggta
ggatggagcatgttgcattgcaccaacgcgaaaaaaacttctggtgtccc
caagcctttagagttcaaacttatcagaggaagagatttgtaattgtaat
ttcattgtcttttaacgagtgTTGCACTCCTTCACATGTTTCTGACGTTT
CGTACTTTCACTCTTGGCTTCAATCCGCCGTTGAATTTCAATTGGCGAAC
GGGGGAGTTTCACTGCTTGCAGATCCAGAGGTCCggaccattgacttcca
agcccgaaggatgggaatttcccatccagaacgcccgcgcgtggttttta
cacaaactctggattgaaagtaaaatctaccgctggatttcaaaaaatgc
agtcctcaaaaacaaaggaaccgctagatacaacccgccgtcgtcatgat
tgcggtgcgttctaggcgcgttctggatgggaaataggtggcttcacttt
ttctttcctgagaaaggttagagattctactctagcccttcgggttatAA
ACTCAATGGTGCGAACCCCTTGTGGGACTGAATTGAGTATCGGGTAGTTG
AATTGTTGAATGAAGGTTCAACTCTGTCACCAGAACTTCAAATAATCCAT
CTCAAACATAGATCTAGCAAGGGATCACACTCGgagatttgacataaaaa
aaagcataaaattttcTGAATTATGGCATAAAATCATTACTAAAATTGAG
AGTGTAACCCCTGATCTAGGGAAGCACCAATAAACCCAGTATTTTGCCAA
ATTTCTGCATGTATAAATGTCATAATTGAATTCACTTGCCAGATTTGGCA
ATAAATAAAATTTGCTTTTAcgtatatatttattttatcaTAGGGAAAAA
GAACAGTTTTGGATTTATCTTGATTTGAGAGAATTTTTGTATACACGTTC
TTTTGGGAAAACATTACATGTGTAAATGTCGTTTGAAGGAATTATTTTGT
TTGAAAGCGAGGCCCGCAATGCTGTTAATTTATCTTGAGAAATGTGCTCT
TTAAttcgatattttattatttttatacgAATTCCATTTTACGATAAGAA
GAAACTCTTATTTAAACGACCTTACTCTCTTATTTGATGAATATtaaatt
ccccttgaaaatcaaatttaaagaaAACGTCAACTAATCTAATTGATCCA
ATTAATTCGAATTacggaaagattcgaataaataGAAAGCATTTTACGAA
GGTTTACCCTTGATGGGAACtgagaataagttcgaattacagaaaggttc
gaataatagaggttcgaattagcgagagtacACTGTACTTGTCCGTTTTA
CAACAATCTCATCATCTATGTACTGTCTTAACTCTAAGTCTTAACCCTGT
GAGTTTTAACATGAATAAGAAATGTCAAAAGTAtactttttccaaatttt
tcatttgaaaacaaGGCCCGCAATGCTGTTGAAGTATGCTcttctaattc
gacgttctatcACTTCGATACGTTCCGTTATTTGATTAggagaaactctc
ataaacgattctctctaattcgatgaaaatccaattccccttgaaaatca
aattagagagcgtcagtTGCTTGTCTGCTTTACAATAATCTCATCTTGTC
TGTTTTCCAGACATTCCCTGATCGCAAATCCAACATggaaaagattcgaa
taatagaggtttgaattagcgagagtccgCCGTACTTATCTGTTTTACAA
TAATCTCATCTTTTCTGTTTTCAATTTCAGACATTTCCTGATCGCAAATC
CAACATGGCGTCTTCGCAGTCCTCGTCTACTTCAACATGTGGCTCGCCCG
AACAACCCTCCatcttcaaaaataatttccatCATGGTCGTTCGTTCGAA
ACACTAAACGTGATGCGTGAACAACGTGTTTTGTGTGACGTCACGGTCCG
TGTTGGGTCAAGAGAGATCTTAGGTAAGTATACAGTAGCTTGTCTATATT
ATCATTTCACAAATGTCATGTAAAGCCAATTTTTCATTAAGCAGGTTTAA
CTTTTTAAGTCAATACGCATGCGCAAAATGTATGTATTTGAGGTAATTAC
TAATTTTATCAACTGATTGTTGAGTATATTGTCCTACAGTATTATGTATT
ATGTACGTATTATGTcccaatatttttaccaattttcattgaaatgttCT
TTAGATTCATCATGAATGTAGCTTGAAATaacatttttcacattttgaaa
atcaagaaTTTTCTCCCTTGTCCCCTCATTCACACATTTTACATTAGCAG
CGGCGAGTCCCTATTTCAATACCATGATCAATGGCGAGAGGAGCGAAAGC
AAAcagaattttctttcttcttctacCTCATAGATCAGCCTTAGCAGCAG
CGAGTCCCTATTTCAATACCATGATCAATGGCGAGATGAGCGAAAGCAAA
cagaattttcttttcttcttctagCTCATAGATCAGCCTTAGCAGCGGCG
AGTCCCTATTTCAATACCATGATCAATGGCGAGAGGAGCGAAAGCAAACa
gaattttcttttcctcttctaGCTCATAGATCAGCCTTAGCAGCGGCGAG
TCCCTATTTCAATACCATGATCAATGGCGAGAGGAGCGAAAGCAAACaga
attttcttttcctcttctaGCTCATAGATCAGCCTTAGCAGCGGCGAGTC
CCTATTTCAATACCATGATCAATGGCGAGAGGAGCGAAAGCAAACagaat
tttcttttcctcttctaGCTCATAGATCAGCCTTAGCAGCGGCGAGTCCC
TATTTCAATACCATGATCAATGGCGAGAGGAGCGAAAGCAAACagaattt
tcttttcctcttctaGCTCATAGATCAGCCTTAGCAGCGGCGAGTCCCTA
TTTCAATACCATGATCAATGGCGAGATGAGCGAAAGCAAAcagaattttc
ttttcttcttctagCTCATAGATCAGCCTTGGCAGCAGCGAGTCTCTATT
TCAATACCATGATCAATGGCGAGATGAGCGAAATCAAAcagaattttctt
ttcttcttctagCTCATAGATCAGCCTTAGCAGCGGCGAGTCCCTATTTC
AATACCATGATCAATGGCGAGATGATCGAAAACAAacataattttctttt
cttcttctagCTCATAGATCAGCCTTAGCAGCGGCGAGTCCGTATTTCTA
CGCCATGTTCACAGTCGAGATGAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013968-exon-sc0000175-1491911889:447991..448144 | TCONS_00013968-exon-sc0000175-1491911889:447991..448144 | Clytia hemisphaerica | exon |
| TCONS_00013968-exon-sc0000175-1510915933:447991..448144 | TCONS_00013968-exon-sc0000175-1510915933:447991..448144 | Clytia hemisphaerica | exon |
| TCONS_00013968-exon-sc0000175-1575043694:447991..448144 | TCONS_00013968-exon-sc0000175-1575043694:447991..448144 | Clytia hemisphaerica | exon |
| TCONS_00013968-exon-sc0000175-1491911889:453871..454063 | TCONS_00013968-exon-sc0000175-1491911889:453871..454063 | Clytia hemisphaerica | exon |
| TCONS_00013968-exon-sc0000175-1510915933:453871..454063 | TCONS_00013968-exon-sc0000175-1510915933:453871..454063 | Clytia hemisphaerica | exon |
| TCONS_00013968-exon-sc0000175-1575043694:453871..454063 | TCONS_00013968-exon-sc0000175-1575043694:453871..454063 | Clytia hemisphaerica | exon |
| TCONS_00013968-exon-sc0000175-1491911889:455251..455316 | TCONS_00013968-exon-sc0000175-1491911889:455251..455316 | Clytia hemisphaerica | exon |
| TCONS_00013968-exon-sc0000175-1510915933:455251..455316 | TCONS_00013968-exon-sc0000175-1510915933:455251..455316 | Clytia hemisphaerica | exon |
| TCONS_00013968-exon-sc0000175-1575043694:455251..455316 | TCONS_00013968-exon-sc0000175-1575043694:455251..455316 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000175 | supercontig | sc0000175:447991..455316 + |
Blast
The following BLAST results are available for this feature:
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