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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013966 ID=TCONS_00013966|Name=TCONS_00013966|organism=Clytia hemisphaerica|type=transcript|length=1551bp
gagaagaagaaaaagaagaaacaaaattcATACATGATGTGGTTATTACG
TTGCAGCCTTTTGGCATGGCTTGTTGTATTTTTTATCGAAGTGCGTTTGA
CCAATGCAAACGATGACGCAGTTGACCATTATATACATAtcaaaaatttt
gatcacattacAAACCGAAAGATTGGTAATACAAGAAAAATATTCCCTTA
TCATCATGATCACCCACATGGAGACAAGGTTCACGAACATGAAAACGAGG
TTCACACGAAACCTGGTCACCATGATGACGACAAGAAAACGCGGCCACAG
TTTGTCGGCCCAAAGCATTTGAGAAGAAAGACCAATCAACATGGGCGTAA
AGGATTACGTCACGGACGTCATGGGCGAAAAGGATTACGTAATGCAGGCG
AAGGAATACGTAATGCAGGCGAAGGATTACGACACGGGCGTAAAGGATTA
CGTCACGGGCGTCATGGGCGAAAAGGATTACGTAATGCAGGCGAAGGATT
ACGACACGGGCGTAAAGGATTACGTCACGGGCGTCATGGGCGAAAAGGAT
TACGTAATGAAGGCGAAGGATTACGACACGAACGAAAAAGATTACACAGA
TTACATCAAGTTGGTACAGAACATCACAACCAAAACAGGACAGGGCGCCA
TGGCAGAAGAGGAGGGCGTAAAGGTAAACGCCCCAACCAAAACGGACGTC
GCCAAGGACAAGAAGGGAAGCACGGACGTAGAGGTGGAAACAATAAAAGA
CAAGGAGGAAAGAATGTTTTTACAACGGTATTGGGCAAAAAACTGAAGAG
ACATGCGTTGAAGTTGTTACAGAAAAGAGCGCTCTCTTCCCAAATTGAGC
CTGAGGTCGTGCCTGATCAAACAGCACCATGAAAGAGGGGACAGTTCGag
tcaatgaagtataagcccgaagggctagaattgaatctttaacctttctc
aattaagaaaaagtgaagccttaaaatatgcgccgtatttttgacgacga
aTTGAATCTAGCAACTCaacaattatttttgaaatttagccgTTAAATTT
AGTTCCAAtccgtcatttgtgtaaaatccAGGcgggccgctcaaggccgc
gcaactttggtaggattttgttggcttcaaatcctaccaaggagattcga
ttctagcccttcgggcttatacttcattgggacAGTTCGAGTGCTCTCAT
TGTCTACCGTTGGGATTTAAATCTCGTAAAACTTTCTCATAAAAAGAAGA
AGATGCTCGTAAAATAGACAAATAACAACATTAATTTCATATTATGTTTT
GTTACGGATTAATAAAAGAATAATCATAAAATCACTCTTTATTATAGCTT
TTTATCCCTGTCTCCCTCTTATACCACCGTTGAAGTTACGGCCTACAGAT
TATACACTGAAGACGGCTTTTTATAAATAAGCTGGATCATTTGGCGCTAA
AAACTACGTCGAGTTTTTCTATTTGTAgtaaatgggctgttccattaaat
ttccatacaggcgggtggacgaaccttttaaagtcaaaaaaagattctag
a Run BLAST on NCBI protein sequence of TCONS_00013966-protein >TCONS_00013966-protein ID=TCONS_00013966-protein|Name=TCONS_00013966-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
EKKKKKKQNSYMMWLLRCSLLAWLVVFFIEVRLTNANDDAVDHYIHIKNF
DHITNRKIGNTRKIFPYHHDHPHGDKVHEHENEVHTKPGHHDDDKKTRPQ
FVGPKHLRRKTNQHGRKGLRHGRHGRKGLRNAGEGIRNAGEGLRHGRKGL
RHGRHGRKGLRNAGEGLRHGRKGLRHGRHGRKGLRNEGEGLRHERKRLHR
LHQVGTEHHNQNRTGRHGRRGGRKGKRPNQNGRRQGQEGKHGRRGGNNKR
QGGKNVFTTVLGKKLKRHALKLLQKRALSSQIEPEVVPDQTAP Run BLAST on NCBI transcript from alignment at sc0000175:399946..402927+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013966 ID=TCONS_00013966|Name=TCONS_00013966|organism=Clytia hemisphaerica|type=transcript|length=2982bp|location=Sequence derived from alignment at sc0000175:399946..402927+ (Clytia hemisphaerica)
gagaagaagaaaaagaagaaacaaaattcATACATGATGTGGTTATTACG
TTGCAGCCTTTTGGCATGGCTTGTTGTATTTTTTATCGAAGTGCGTTTGA
CCAATGCAAACGATGACGCAGTTGACCATTATATACATAGTAAGttaaca
aaaatattaagaTACTTTTCTAACTGGAATAatcggccaaaatatcgtca
gtggaaaattacactccaatttttgtccccaccgaaaataatcaaataaa
ccatcactgcaaaatattatgctattttcccatcctcactgaattttctg
gcttgaattgaaaacaaaagaatgtaaATCCCAAGCcagaaaaaatatgg
aaatattaatccccatcgagttttcaGTCCTTAATTTTTATCTCCActag
ctgaaaaaatcctactgggtcaACTTTTGAGGGGGGCTGGTAATAAATTT
ACAAGGAAGAGGGAATCGTTGTCCATGAAAATCCCAATGATTCTCAGATA
TTTTGACTTCATACTTTCAtggtaaactcgaacccagGTTGCTATTTGTA
CTTATTTTActaccgtcgttttgtataagtttcccatttccgcactaaga
ttcctttgccgTTTTTCTATTGACCAGGACTACGGTTTGTTAAAAAATTA
GCCTCGGAAAGTTAGGCAAATTTGTtgcacaagattttccgtacctttag
aaacaaaccctttccaatcgCTTGCTGGTTATCCTatgggaaaaatagcg
gaaagatttcggaaaagtgacaagaatcttagtgcggggaaacttataaa
aaacgcgacggtagtctgaatcgcagacctctataggtataccttatcgg
gaaaaacttcgtcggggaaaagtcacgaaattttggacaagtgacgaata
ttttccccgacgaaagttttccccggccttaatgcgtttaccaactaacc
agcaagtgacgaatttttccccgacgaaaattttccccaaagaagttttc
cccgataaggtacctcTTATATATACATCTTAATAAGGAACTCTTTTTGA
TAGATGACGAGCATAGAAGCATATGCTTTCACTTAAACTAATTAAggtca
aaatcatcaaaaattttcaatttggttttcagtcaaaaattttgatcaca
ttacAAACCGAAAGATTGGTAATACAAGAAAAATATTCCCTTATCATCAT
GATCACCCACATGGAGACAAGGTTCACGAACATGAAAACGAGGTTCACAC
GAAACCTGGTCACCATGATGACGACAAGAAAACGCGGCCACAGTTTGTCG
GCCCAAAGGTAAGGACAGTTAATCTCGTATCCATGTATCCCAGGCATTTG
AGATAAAAGAATTTTAAACATATAATAGACATGATAAAGATAACTTtaga
ttgaaaagaaaattagcaacctcgtacccagagccactagCACCACTTTT
TTAATTTCACTGACAAAGGTGATGCAACTTGTTTCAACGTCAATTTACAT
ACATGACTTacaatttttctttgacttttatATCAATAGCATTTGAGAAG
AAAGACCAATCAACATGGGCGTAAAGGATTACGTCACGGACGTCATGGGC
GAAAAGGATTACGTAATGCAGGCGAAGGAATACGTAATGCAGGCGAAGGA
TTACGACACGGGCGTAAAGGATTACGTCACGGGCGTCATGGGCGAAAAGG
ATTACGTAATGCAGGCGAAGGAATACGTAATGCAGGCGAAGGATTACGAC
ACGGGCGTAAAGGATTACGTCACGGGCGTCATGGGCGAAAAGGATTACGT
AATGCAGGCGAAGGAATACGTAATGCAGGCGAAGGATTACGACACGGGCG
TAAAGGATTACGTCACGGGCGTCATGGGCGAAAAGGATTACGTAATGCAG
GCGAAGGAATACGTAATGCAGGCGAAGGATTACGACACGGGCGTAAAGGA
TTACGTCACGGGCGTCATGGGCGAAAAGGATTACGTAATGAAGGCGAAGG
ATTACGACACGAACGAAAAAGATTACACAGATTACATCAAGTTGGTACAG
AACATCACAACCAAAACAGGACAGGGCGCCATGGCAGAAGAGGAGGGCGT
AAAGGTAAACGCCCCAACCAAAACGGACGTCGCCAAGGACAAGAAGGGAA
GCACGGACGTAGAGGTGGAAACAATAAAAGACAAGGAGGAAAGAATGTTT
TTACAACGGTATTGGGCAAAAAACTGAAGAGACATGCGTTGAAGTTGTTA
CAGAAAAGAGCGCTCTCTTCCCAAATTGAGCCTGAGGTCGTGCCTGATCA
AACAGCACCATGAAAGAGGGGACAGTTCGagtcaatgaagtataagcccg
aagggctagaattgaatctttaacctttctcaattaagaaaaagtgaagc
cttaaaatatgcgccgtatttttgacgacgaaTTGAATCTAGCAACTCaa
caattatttttgaaatttagccgTTAAATTTAGTTCCAAtccgtcatttg
tgtaaaatccAGGcgggccgctcaaggccgcgcaactttggtaggatttt
gttggcttcaaatcctaccaaggagattcgattctagcccttcgggctta
tacttcattgggacAGTTCGAGTGCTCTCATTGTCTACCGTTGGGATTTA
AATCTCGTAAAACTTTCTCATAAAAAGAAGAAGATGCTCGTAAAATAGAC
AAATAACAACATTAATTTCATATTATGTTTTGTTACGGATTAATAAAAGA
ATAATCATAAAATCACTCTTTATTATAGCTTTTTATCCCTGTCTCCCTCT
TATACCACCGTTGAAGTTACGGCCTACAGATTATACACTGAAGACGGCTT
TTTATAAATAAGCTGGATCATTTGGCGCTAAAAACTACGTCGAGTTTTTC
TATTTGTAgtaaatgggctgttccattaaatttccatacaggcgggtgga
cgaaccttttaaagtcaaaaaaagattctaga Coding sequence (CDS) from alignment at sc0000175:399946..402927+ >TCONS_00013966 ID=TCONS_00013966|Name=TCONS_00013966|organism=Clytia hemisphaerica|type=CDS|length=3528bp|location=Sequence derived from alignment at sc0000175:399946..402927+ (Clytia hemisphaerica)
gagaagaagaaaaagaagaaacaaaattcATACATGATGTGGTTATTACG
TTGCAGCCTTTTGGCATGGCTTGTTGTATTTTTTATCGAAGTGCGTTTGA
CCAATGCAAACGATGACGCAGTTGACCATTATATACATAtcaaaaatttt
gatcacattacAAACCGAAAGATTGGTAATACAAGAAAAATATTCCCTTA
TCATCATGATCACCCACATGGAGACAAGGTTCACGAACATGAAAACGAGG
TTCACACGAAACCTGGTCACCATGATGACGACAAGAAAACGCGGCCACAG
TTTGTCGGCCCAAAGCATTTGAGAAGAAAGACCAATCAACATGGGCGTAA
AGGATTACGTCACGGACGTCATGGGCGAAAAGGATTACGTAATGCAGGCG
AAGGAATACGTAATGCAGGCGAAGGATTACGACACGGGCGTAAAGGATTA
CGTCACGGGCGTCATGGGCGAAAAGGATTACGTAATGCAGGCGAAGGATT
ACGACACGGGCGTAAAGGATTACGTCACGGGCGTCATGGGCGAAAAGGAT
TACGTAATGAAGGCGAAGGATTACGACACGAACGAAAAAGATTACACAGA
TTACATCAAGTTGGTACAGAACATCACAACCAAAACAGGACAGGGCGCCA
TGGCAGAAGAGGAGGGCGTAAAGGTAAACGCCCCAACCAAAACGGACGTC
GCCAAGGACAAGAAGGGAAGCACGGACGTAGAGGTGGAAACAATAAAAGA
CAAGGAGGAAAGAATGTTTTTACAACGGTATTGGGCAAAAAACTGAAGAG
ACATGCGTTGAAGTTGTTACAGAAAAGAGCGCTCTCTTCCCAAATTGAGC
CTGAGGTCGTGCCTGATCAAACAGCACCATGAgagaagaagaaaaagaag
aaacaaaattcATACATGATGTGGTTATTACGTTGCAGCCTTTTGGCATG
GCTTGTTGTATTTTTTATCGAAGTGCGTTTGACCAATGCAAACGATGACG
CAGTTGACCATTATATACATAtcaaaaattttgatcacattacAAACCGA
AAGATTGGTAATACAAGAAAAATATTCCCTTATCATCATGATCACCCACA
TGGAGACAAGGTTCACGAACATGAAAACGAGGTTCACACGAAACCTGGTC
ACCATGATGACGACAAGAAAACGCGGCCACAGTTTGTCGGCCCAAAGCAT
TTGAGAAGAAAGACCAATCAACATGGGCGTAAAGGATTACGTCACGGACG
TCATGGGCGAAAAGGATTACGTAATGCAGGCGAAGGAATACGTAATGCAG
GCGAAGGATTACGACACGGGCGTAAAGGATTACGTCACGGGCGTCATGGG
CGAAAAGGATTACGTAATGCAGGCGAAGGATTACGACACGGGCGTAAAGG
ATTACGTCACGGGCGTCATGGGCGAAAAGGATTACGTAATGAAGGCGAAG
GATTACGACACGAACGAAAAAGATTACACAGATTACATCAAGTTGGTACA
GAACATCACAACCAAAACAGGACAGGGCGCCATGGCAGAAGAGGAGGGCG
TAAAGGTAAACGCCCCAACCAAAACGGACGTCGCCAAGGACAAGAAGGGA
AGCACGGACGTAGAGGTGGAAACAATAAAAGACAAGGAGGAAAGAATGTT
TTTACAACGGTATTGGGCAAAAAACTGAAGAGACATGCGTTGAAGTTGTT
ACAGAAAAGAGCGCTCTCTTCCCAAATTGAGCCTGAGGTCGTGCCTGATC
AAACAGCACCATGAgagaagaagaaaaagaagaaacaaaattcATACATG
ATGTGGTTATTACGTTGCAGCCTTTTGGCATGGCTTGTTGTATTTTTTAT
CGAAGTGCGTTTGACCAATGCAAACGATGACGCAGTTGACCATTATATAC
ATAtcaaaaattttgatcacattacAAACCGAAAGATTGGTAATACAAGA
AAAATATTCCCTTATCATCATGATCACCCACATGGAGACAAGGTTCACGA
ACATGAAAACGAGGTTCACACGAAACCTGGTCACCATGATGACGACAAGA
AAACGCGGCCACAGTTTGTCGGCCCAAAGCATTTGAGAAGAAAGACCAAT
CAACATGGGCGTAAAGGATTACGTCACGGACGTCATGGGCGAAAAGGATT
ACGTAATGCAGGCGAAGGAATACGTAATGCAGGCGAAGGATTACGACACG
GGCGTAAAGGATTACGTCACGGGCGTCATGGGCGAAAAGGATTACGTAAT
GCAGGCGAAGGATTACGACACGGGCGTAAAGGATTACGTCACGGGCGTCA
TGGGCGAAAAGGATTACGTAATGAAGGCGAAGGATTACGACACGAACGAA
AAAGATTACACAGATTACATCAAGTTGGTACAGAACATCACAACCAAAAC
AGGACAGGGCGCCATGGCAGAAGAGGAGGGCGTAAAGGTAAACGCCCCAA
CCAAAACGGACGTCGCCAAGGACAAGAAGGGAAGCACGGACGTAGAGGTG
GAAACAATAAAAGACAAGGAGGAAAGAATGTTTTTACAACGGTATTGGGC
AAAAAACTGAAGAGACATGCGTTGAAGTTGTTACAGAAAAGAGCGCTCTC
TTCCCAAATTGAGCCTGAGGTCGTGCCTGATCAAACAGCACCATGAgaga
agaagaaaaagaagaaacaaaattcATACATGATGTGGTTATTACGTTGC
AGCCTTTTGGCATGGCTTGTTGTATTTTTTATCGAAGTGCGTTTGACCAA
TGCAAACGATGACGCAGTTGACCATTATATACATAtcaaaaattttgatc
acattacAAACCGAAAGATTGGTAATACAAGAAAAATATTCCCTTATCAT
CATGATCACCCACATGGAGACAAGGTTCACGAACATGAAAACGAGGTTCA
CACGAAACCTGGTCACCATGATGACGACAAGAAAACGCGGCCACAGTTTG
TCGGCCCAAAGCATTTGAGAAGAAAGACCAATCAACATGGGCGTAAAGGA
TTACGTCACGGACGTCATGGGCGAAAAGGATTACGTAATGCAGGCGAAGG
AATACGTAATGCAGGCGAAGGATTACGACACGGGCGTAAAGGATTACGTC
ACGGGCGTCATGGGCGAAAAGGATTACGTAATGCAGGCGAAGGATTACGA
CACGGGCGTAAAGGATTACGTCACGGGCGTCATGGGCGAAAAGGATTACG
TAATGAAGGCGAAGGATTACGACACGAACGAAAAAGATTACACAGATTAC
ATCAAGTTGGTACAGAACATCACAACCAAAACAGGACAGGGCGCCATGGC
AGAAGAGGAGGGCGTAAAGGTAAACGCCCCAACCAAAACGGACGTCGCCA
AGGACAAGAAGGGAAGCACGGACGTAGAGGTGGAAACAATAAAAGACAAG
GAGGAAAGAATGTTTTTACAACGGTATTGGGCAAAAAACTGAAGAGACAT
GCGTTGAAGTTGTTACAGAAAAGAGCGCTCTCTTCCCAAATTGAGCCTGA
GGTCGTGCCTGATCAAACAGCACCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013966-exon-sc0000175-1491911889:399946..400084 | TCONS_00013966-exon-sc0000175-1491911889:399946..400084 | Clytia hemisphaerica | exon |
| TCONS_00013966-exon-sc0000175-1510915933:399946..400084 | TCONS_00013966-exon-sc0000175-1510915933:399946..400084 | Clytia hemisphaerica | exon |
| TCONS_00013966-exon-sc0000175-1575043694:399946..400084 | TCONS_00013966-exon-sc0000175-1575043694:399946..400084 | Clytia hemisphaerica | exon |
| TCONS_00013966-exon-sc0000175-1491911889:401078..401253 | TCONS_00013966-exon-sc0000175-1491911889:401078..401253 | Clytia hemisphaerica | exon |
| TCONS_00013966-exon-sc0000175-1510915933:401078..401253 | TCONS_00013966-exon-sc0000175-1510915933:401078..401253 | Clytia hemisphaerica | exon |
| TCONS_00013966-exon-sc0000175-1575043694:401078..401253 | TCONS_00013966-exon-sc0000175-1575043694:401078..401253 | Clytia hemisphaerica | exon |
| TCONS_00013966-exon-sc0000175-1491911889:401485..401659 | TCONS_00013966-exon-sc0000175-1491911889:401485..401659 | Clytia hemisphaerica | exon |
| TCONS_00013966-exon-sc0000175-1510915933:401485..401659 | TCONS_00013966-exon-sc0000175-1510915933:401485..401659 | Clytia hemisphaerica | exon |
| TCONS_00013966-exon-sc0000175-1575043694:401485..401659 | TCONS_00013966-exon-sc0000175-1575043694:401485..401659 | Clytia hemisphaerica | exon |
| TCONS_00013966-exon-sc0000175-1491911889:401867..402927 | TCONS_00013966-exon-sc0000175-1491911889:401867..402927 | Clytia hemisphaerica | exon |
| TCONS_00013966-exon-sc0000175-1510915933:401867..402927 | TCONS_00013966-exon-sc0000175-1510915933:401867..402927 | Clytia hemisphaerica | exon |
| TCONS_00013966-exon-sc0000175-1575043694:401867..402927 | TCONS_00013966-exon-sc0000175-1575043694:401867..402927 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000175 | supercontig | sc0000175:399946..402927 + |
Blast
The following BLAST results are available for this feature:
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