TCONS_00013966 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013966
Unique NameTCONS_00013966
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1551

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013966 ID=TCONS_00013966|Name=TCONS_00013966|organism=Clytia hemisphaerica|type=transcript|length=1551bp
gagaagaagaaaaagaagaaacaaaattcATACATGATGTGGTTATTACG
TTGCAGCCTTTTGGCATGGCTTGTTGTATTTTTTATCGAAGTGCGTTTGA
CCAATGCAAACGATGACGCAGTTGACCATTATATACATAtcaaaaatttt
gatcacattacAAACCGAAAGATTGGTAATACAAGAAAAATATTCCCTTA
TCATCATGATCACCCACATGGAGACAAGGTTCACGAACATGAAAACGAGG
TTCACACGAAACCTGGTCACCATGATGACGACAAGAAAACGCGGCCACAG
TTTGTCGGCCCAAAGCATTTGAGAAGAAAGACCAATCAACATGGGCGTAA
AGGATTACGTCACGGACGTCATGGGCGAAAAGGATTACGTAATGCAGGCG
AAGGAATACGTAATGCAGGCGAAGGATTACGACACGGGCGTAAAGGATTA
CGTCACGGGCGTCATGGGCGAAAAGGATTACGTAATGCAGGCGAAGGATT
ACGACACGGGCGTAAAGGATTACGTCACGGGCGTCATGGGCGAAAAGGAT
TACGTAATGAAGGCGAAGGATTACGACACGAACGAAAAAGATTACACAGA
TTACATCAAGTTGGTACAGAACATCACAACCAAAACAGGACAGGGCGCCA
TGGCAGAAGAGGAGGGCGTAAAGGTAAACGCCCCAACCAAAACGGACGTC
GCCAAGGACAAGAAGGGAAGCACGGACGTAGAGGTGGAAACAATAAAAGA
CAAGGAGGAAAGAATGTTTTTACAACGGTATTGGGCAAAAAACTGAAGAG
ACATGCGTTGAAGTTGTTACAGAAAAGAGCGCTCTCTTCCCAAATTGAGC
CTGAGGTCGTGCCTGATCAAACAGCACCATGAAAGAGGGGACAGTTCGag
tcaatgaagtataagcccgaagggctagaattgaatctttaacctttctc
aattaagaaaaagtgaagccttaaaatatgcgccgtatttttgacgacga
aTTGAATCTAGCAACTCaacaattatttttgaaatttagccgTTAAATTT
AGTTCCAAtccgtcatttgtgtaaaatccAGGcgggccgctcaaggccgc
gcaactttggtaggattttgttggcttcaaatcctaccaaggagattcga
ttctagcccttcgggcttatacttcattgggacAGTTCGAGTGCTCTCAT
TGTCTACCGTTGGGATTTAAATCTCGTAAAACTTTCTCATAAAAAGAAGA
AGATGCTCGTAAAATAGACAAATAACAACATTAATTTCATATTATGTTTT
GTTACGGATTAATAAAAGAATAATCATAAAATCACTCTTTATTATAGCTT
TTTATCCCTGTCTCCCTCTTATACCACCGTTGAAGTTACGGCCTACAGAT
TATACACTGAAGACGGCTTTTTATAAATAAGCTGGATCATTTGGCGCTAA
AAACTACGTCGAGTTTTTCTATTTGTAgtaaatgggctgttccattaaat
ttccatacaggcgggtggacgaaccttttaaagtcaaaaaaagattctag
a
Run BLAST on NCBI

protein sequence of TCONS_00013966-protein

>TCONS_00013966-protein ID=TCONS_00013966-protein|Name=TCONS_00013966-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
EKKKKKKQNSYMMWLLRCSLLAWLVVFFIEVRLTNANDDAVDHYIHIKNF
DHITNRKIGNTRKIFPYHHDHPHGDKVHEHENEVHTKPGHHDDDKKTRPQ
FVGPKHLRRKTNQHGRKGLRHGRHGRKGLRNAGEGIRNAGEGLRHGRKGL
RHGRHGRKGLRNAGEGLRHGRKGLRHGRHGRKGLRNEGEGLRHERKRLHR
LHQVGTEHHNQNRTGRHGRRGGRKGKRPNQNGRRQGQEGKHGRRGGNNKR
QGGKNVFTTVLGKKLKRHALKLLQKRALSSQIEPEVVPDQTAP
Run BLAST on NCBI

transcript from alignment at sc0000175:399946..402927+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013966 ID=TCONS_00013966|Name=TCONS_00013966|organism=Clytia hemisphaerica|type=transcript|length=2982bp|location=Sequence derived from alignment at sc0000175:399946..402927+ (Clytia hemisphaerica)
gagaagaagaaaaagaagaaacaaaattcATACATGATGTGGTTATTACG TTGCAGCCTTTTGGCATGGCTTGTTGTATTTTTTATCGAAGTGCGTTTGA CCAATGCAAACGATGACGCAGTTGACCATTATATACATAGTAAGttaaca aaaatattaagaTACTTTTCTAACTGGAATAatcggccaaaatatcgtca gtggaaaattacactccaatttttgtccccaccgaaaataatcaaataaa ccatcactgcaaaatattatgctattttcccatcctcactgaattttctg gcttgaattgaaaacaaaagaatgtaaATCCCAAGCcagaaaaaatatgg aaatattaatccccatcgagttttcaGTCCTTAATTTTTATCTCCActag ctgaaaaaatcctactgggtcaACTTTTGAGGGGGGCTGGTAATAAATTT ACAAGGAAGAGGGAATCGTTGTCCATGAAAATCCCAATGATTCTCAGATA TTTTGACTTCATACTTTCAtggtaaactcgaacccagGTTGCTATTTGTA CTTATTTTActaccgtcgttttgtataagtttcccatttccgcactaaga ttcctttgccgTTTTTCTATTGACCAGGACTACGGTTTGTTAAAAAATTA GCCTCGGAAAGTTAGGCAAATTTGTtgcacaagattttccgtacctttag aaacaaaccctttccaatcgCTTGCTGGTTATCCTatgggaaaaatagcg gaaagatttcggaaaagtgacaagaatcttagtgcggggaaacttataaa aaacgcgacggtagtctgaatcgcagacctctataggtataccttatcgg gaaaaacttcgtcggggaaaagtcacgaaattttggacaagtgacgaata ttttccccgacgaaagttttccccggccttaatgcgtttaccaactaacc agcaagtgacgaatttttccccgacgaaaattttccccaaagaagttttc cccgataaggtacctcTTATATATACATCTTAATAAGGAACTCTTTTTGA TAGATGACGAGCATAGAAGCATATGCTTTCACTTAAACTAATTAAggtca aaatcatcaaaaattttcaatttggttttcagtcaaaaattttgatcaca ttacAAACCGAAAGATTGGTAATACAAGAAAAATATTCCCTTATCATCAT GATCACCCACATGGAGACAAGGTTCACGAACATGAAAACGAGGTTCACAC GAAACCTGGTCACCATGATGACGACAAGAAAACGCGGCCACAGTTTGTCG GCCCAAAGGTAAGGACAGTTAATCTCGTATCCATGTATCCCAGGCATTTG AGATAAAAGAATTTTAAACATATAATAGACATGATAAAGATAACTTtaga ttgaaaagaaaattagcaacctcgtacccagagccactagCACCACTTTT TTAATTTCACTGACAAAGGTGATGCAACTTGTTTCAACGTCAATTTACAT ACATGACTTacaatttttctttgacttttatATCAATAGCATTTGAGAAG AAAGACCAATCAACATGGGCGTAAAGGATTACGTCACGGACGTCATGGGC GAAAAGGATTACGTAATGCAGGCGAAGGAATACGTAATGCAGGCGAAGGA TTACGACACGGGCGTAAAGGATTACGTCACGGGCGTCATGGGCGAAAAGG ATTACGTAATGCAGGCGAAGGAATACGTAATGCAGGCGAAGGATTACGAC ACGGGCGTAAAGGATTACGTCACGGGCGTCATGGGCGAAAAGGATTACGT AATGCAGGCGAAGGAATACGTAATGCAGGCGAAGGATTACGACACGGGCG TAAAGGATTACGTCACGGGCGTCATGGGCGAAAAGGATTACGTAATGCAG GCGAAGGAATACGTAATGCAGGCGAAGGATTACGACACGGGCGTAAAGGA TTACGTCACGGGCGTCATGGGCGAAAAGGATTACGTAATGAAGGCGAAGG ATTACGACACGAACGAAAAAGATTACACAGATTACATCAAGTTGGTACAG AACATCACAACCAAAACAGGACAGGGCGCCATGGCAGAAGAGGAGGGCGT AAAGGTAAACGCCCCAACCAAAACGGACGTCGCCAAGGACAAGAAGGGAA GCACGGACGTAGAGGTGGAAACAATAAAAGACAAGGAGGAAAGAATGTTT TTACAACGGTATTGGGCAAAAAACTGAAGAGACATGCGTTGAAGTTGTTA CAGAAAAGAGCGCTCTCTTCCCAAATTGAGCCTGAGGTCGTGCCTGATCA AACAGCACCATGAAAGAGGGGACAGTTCGagtcaatgaagtataagcccg aagggctagaattgaatctttaacctttctcaattaagaaaaagtgaagc cttaaaatatgcgccgtatttttgacgacgaaTTGAATCTAGCAACTCaa caattatttttgaaatttagccgTTAAATTTAGTTCCAAtccgtcatttg tgtaaaatccAGGcgggccgctcaaggccgcgcaactttggtaggatttt gttggcttcaaatcctaccaaggagattcgattctagcccttcgggctta tacttcattgggacAGTTCGAGTGCTCTCATTGTCTACCGTTGGGATTTA AATCTCGTAAAACTTTCTCATAAAAAGAAGAAGATGCTCGTAAAATAGAC AAATAACAACATTAATTTCATATTATGTTTTGTTACGGATTAATAAAAGA ATAATCATAAAATCACTCTTTATTATAGCTTTTTATCCCTGTCTCCCTCT TATACCACCGTTGAAGTTACGGCCTACAGATTATACACTGAAGACGGCTT TTTATAAATAAGCTGGATCATTTGGCGCTAAAAACTACGTCGAGTTTTTC TATTTGTAgtaaatgggctgttccattaaatttccatacaggcgggtgga cgaaccttttaaagtcaaaaaaagattctaga

Coding sequence (CDS) from alignment at sc0000175:399946..402927+

>TCONS_00013966 ID=TCONS_00013966|Name=TCONS_00013966|organism=Clytia hemisphaerica|type=CDS|length=3528bp|location=Sequence derived from alignment at sc0000175:399946..402927+ (Clytia hemisphaerica)
gagaagaagaaaaagaagaaacaaaattcATACATGATGTGGTTATTACG
TTGCAGCCTTTTGGCATGGCTTGTTGTATTTTTTATCGAAGTGCGTTTGA
CCAATGCAAACGATGACGCAGTTGACCATTATATACATAtcaaaaatttt
gatcacattacAAACCGAAAGATTGGTAATACAAGAAAAATATTCCCTTA
TCATCATGATCACCCACATGGAGACAAGGTTCACGAACATGAAAACGAGG
TTCACACGAAACCTGGTCACCATGATGACGACAAGAAAACGCGGCCACAG
TTTGTCGGCCCAAAGCATTTGAGAAGAAAGACCAATCAACATGGGCGTAA
AGGATTACGTCACGGACGTCATGGGCGAAAAGGATTACGTAATGCAGGCG
AAGGAATACGTAATGCAGGCGAAGGATTACGACACGGGCGTAAAGGATTA
CGTCACGGGCGTCATGGGCGAAAAGGATTACGTAATGCAGGCGAAGGATT
ACGACACGGGCGTAAAGGATTACGTCACGGGCGTCATGGGCGAAAAGGAT
TACGTAATGAAGGCGAAGGATTACGACACGAACGAAAAAGATTACACAGA
TTACATCAAGTTGGTACAGAACATCACAACCAAAACAGGACAGGGCGCCA
TGGCAGAAGAGGAGGGCGTAAAGGTAAACGCCCCAACCAAAACGGACGTC
GCCAAGGACAAGAAGGGAAGCACGGACGTAGAGGTGGAAACAATAAAAGA
CAAGGAGGAAAGAATGTTTTTACAACGGTATTGGGCAAAAAACTGAAGAG
ACATGCGTTGAAGTTGTTACAGAAAAGAGCGCTCTCTTCCCAAATTGAGC
CTGAGGTCGTGCCTGATCAAACAGCACCATGAgagaagaagaaaaagaag
aaacaaaattcATACATGATGTGGTTATTACGTTGCAGCCTTTTGGCATG
GCTTGTTGTATTTTTTATCGAAGTGCGTTTGACCAATGCAAACGATGACG
CAGTTGACCATTATATACATAtcaaaaattttgatcacattacAAACCGA
AAGATTGGTAATACAAGAAAAATATTCCCTTATCATCATGATCACCCACA
TGGAGACAAGGTTCACGAACATGAAAACGAGGTTCACACGAAACCTGGTC
ACCATGATGACGACAAGAAAACGCGGCCACAGTTTGTCGGCCCAAAGCAT
TTGAGAAGAAAGACCAATCAACATGGGCGTAAAGGATTACGTCACGGACG
TCATGGGCGAAAAGGATTACGTAATGCAGGCGAAGGAATACGTAATGCAG
GCGAAGGATTACGACACGGGCGTAAAGGATTACGTCACGGGCGTCATGGG
CGAAAAGGATTACGTAATGCAGGCGAAGGATTACGACACGGGCGTAAAGG
ATTACGTCACGGGCGTCATGGGCGAAAAGGATTACGTAATGAAGGCGAAG
GATTACGACACGAACGAAAAAGATTACACAGATTACATCAAGTTGGTACA
GAACATCACAACCAAAACAGGACAGGGCGCCATGGCAGAAGAGGAGGGCG
TAAAGGTAAACGCCCCAACCAAAACGGACGTCGCCAAGGACAAGAAGGGA
AGCACGGACGTAGAGGTGGAAACAATAAAAGACAAGGAGGAAAGAATGTT
TTTACAACGGTATTGGGCAAAAAACTGAAGAGACATGCGTTGAAGTTGTT
ACAGAAAAGAGCGCTCTCTTCCCAAATTGAGCCTGAGGTCGTGCCTGATC
AAACAGCACCATGAgagaagaagaaaaagaagaaacaaaattcATACATG
ATGTGGTTATTACGTTGCAGCCTTTTGGCATGGCTTGTTGTATTTTTTAT
CGAAGTGCGTTTGACCAATGCAAACGATGACGCAGTTGACCATTATATAC
ATAtcaaaaattttgatcacattacAAACCGAAAGATTGGTAATACAAGA
AAAATATTCCCTTATCATCATGATCACCCACATGGAGACAAGGTTCACGA
ACATGAAAACGAGGTTCACACGAAACCTGGTCACCATGATGACGACAAGA
AAACGCGGCCACAGTTTGTCGGCCCAAAGCATTTGAGAAGAAAGACCAAT
CAACATGGGCGTAAAGGATTACGTCACGGACGTCATGGGCGAAAAGGATT
ACGTAATGCAGGCGAAGGAATACGTAATGCAGGCGAAGGATTACGACACG
GGCGTAAAGGATTACGTCACGGGCGTCATGGGCGAAAAGGATTACGTAAT
GCAGGCGAAGGATTACGACACGGGCGTAAAGGATTACGTCACGGGCGTCA
TGGGCGAAAAGGATTACGTAATGAAGGCGAAGGATTACGACACGAACGAA
AAAGATTACACAGATTACATCAAGTTGGTACAGAACATCACAACCAAAAC
AGGACAGGGCGCCATGGCAGAAGAGGAGGGCGTAAAGGTAAACGCCCCAA
CCAAAACGGACGTCGCCAAGGACAAGAAGGGAAGCACGGACGTAGAGGTG
GAAACAATAAAAGACAAGGAGGAAAGAATGTTTTTACAACGGTATTGGGC
AAAAAACTGAAGAGACATGCGTTGAAGTTGTTACAGAAAAGAGCGCTCTC
TTCCCAAATTGAGCCTGAGGTCGTGCCTGATCAAACAGCACCATGAgaga
agaagaaaaagaagaaacaaaattcATACATGATGTGGTTATTACGTTGC
AGCCTTTTGGCATGGCTTGTTGTATTTTTTATCGAAGTGCGTTTGACCAA
TGCAAACGATGACGCAGTTGACCATTATATACATAtcaaaaattttgatc
acattacAAACCGAAAGATTGGTAATACAAGAAAAATATTCCCTTATCAT
CATGATCACCCACATGGAGACAAGGTTCACGAACATGAAAACGAGGTTCA
CACGAAACCTGGTCACCATGATGACGACAAGAAAACGCGGCCACAGTTTG
TCGGCCCAAAGCATTTGAGAAGAAAGACCAATCAACATGGGCGTAAAGGA
TTACGTCACGGACGTCATGGGCGAAAAGGATTACGTAATGCAGGCGAAGG
AATACGTAATGCAGGCGAAGGATTACGACACGGGCGTAAAGGATTACGTC
ACGGGCGTCATGGGCGAAAAGGATTACGTAATGCAGGCGAAGGATTACGA
CACGGGCGTAAAGGATTACGTCACGGGCGTCATGGGCGAAAAGGATTACG
TAATGAAGGCGAAGGATTACGACACGAACGAAAAAGATTACACAGATTAC
ATCAAGTTGGTACAGAACATCACAACCAAAACAGGACAGGGCGCCATGGC
AGAAGAGGAGGGCGTAAAGGTAAACGCCCCAACCAAAACGGACGTCGCCA
AGGACAAGAAGGGAAGCACGGACGTAGAGGTGGAAACAATAAAAGACAAG
GAGGAAAGAATGTTTTTACAACGGTATTGGGCAAAAAACTGAAGAGACAT
GCGTTGAAGTTGTTACAGAAAAGAGCGCTCTCTTCCCAAATTGAGCCTGA
GGTCGTGCCTGATCAAACAGCACCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007813XLOC_007813Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013966-exon-sc0000175-1491911889:399946..400084TCONS_00013966-exon-sc0000175-1491911889:399946..400084Clytia hemisphaericaexon
TCONS_00013966-exon-sc0000175-1510915933:399946..400084TCONS_00013966-exon-sc0000175-1510915933:399946..400084Clytia hemisphaericaexon
TCONS_00013966-exon-sc0000175-1575043694:399946..400084TCONS_00013966-exon-sc0000175-1575043694:399946..400084Clytia hemisphaericaexon
TCONS_00013966-exon-sc0000175-1491911889:401078..401253TCONS_00013966-exon-sc0000175-1491911889:401078..401253Clytia hemisphaericaexon
TCONS_00013966-exon-sc0000175-1510915933:401078..401253TCONS_00013966-exon-sc0000175-1510915933:401078..401253Clytia hemisphaericaexon
TCONS_00013966-exon-sc0000175-1575043694:401078..401253TCONS_00013966-exon-sc0000175-1575043694:401078..401253Clytia hemisphaericaexon
TCONS_00013966-exon-sc0000175-1491911889:401485..401659TCONS_00013966-exon-sc0000175-1491911889:401485..401659Clytia hemisphaericaexon
TCONS_00013966-exon-sc0000175-1510915933:401485..401659TCONS_00013966-exon-sc0000175-1510915933:401485..401659Clytia hemisphaericaexon
TCONS_00013966-exon-sc0000175-1575043694:401485..401659TCONS_00013966-exon-sc0000175-1575043694:401485..401659Clytia hemisphaericaexon
TCONS_00013966-exon-sc0000175-1491911889:401867..402927TCONS_00013966-exon-sc0000175-1491911889:401867..402927Clytia hemisphaericaexon
TCONS_00013966-exon-sc0000175-1510915933:401867..402927TCONS_00013966-exon-sc0000175-1510915933:401867..402927Clytia hemisphaericaexon
TCONS_00013966-exon-sc0000175-1575043694:401867..402927TCONS_00013966-exon-sc0000175-1575043694:401867..402927Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013966-proteinTCONS_00013966-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000175supercontigsc0000175:399946..402927 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.531597 0.324804 0 1.0613 1.06572 1.41864 2.91372 0.787599 1.93995 9.18248 5.8927 7.83527 0.295922 0.953539 0.287887 0 0.380253 0 0 0 0.369481 0.575129 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013966 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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