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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013952 ID=TCONS_00013952|Name=TCONS_00013952|organism=Clytia hemisphaerica|type=transcript|length=2905bp
TAAGTGTGTTAATTTTAATATCTACTGTTTTTTCTATTTGcaagtttctt
taaaaaaataaaatggcaTCACAATTGAATTTACAACAGAAAATCAAAGC
ATTGAAATCGAAGAATATCGATCCATCAGAATGCACCCAACGAACATCAT
TATATCATCAAATATTGATAAATGCAAAATCCACCATCGACaaacaaaac
cgaaaattcaaCCTCGGGAATGGTCAGTTATTTACCGACCCTATTCGTGC
CGCTGATCATCTTCTCCAAAGAGAATATGCCAAGTCAGCATTATTTGACG
CCAACCGTCACGATCCAATTTTCATTCCCCCAGTTTTTCAATCACACCAA
TACGCAAAGAAGGATTCAACCGTACATCTCCTTGATTTCGATGTTAACAT
TTTAAACACTCTTAAGAAAAGTTTGGATAATTTGAAGAAGGATTCTCCAG
CCTTTTGGTTTACGGGAGAACTTCAAGCTTTCTATGATCTCCAATTAAAC
AACTCTAGCGGTAATGATATCAACGCAAGAGAATTCTATAATTGGATCTT
GAATGTCCAAATCATGTATCTCTTGATGGAAGAGATTGGCAATCAACCGA
TCCAAAGTTCTTTAAGAATGTTATGCTGCTGTCGTCAACCAAGTACAAAC
GATCTGACTTTACCATCAACAACCGAGGATAACAATACATTCATCCAAGC
ATGTATCCAGGAATTGGCTTTAATATCACCAGGATCAAAACTGgaacaaa
ctctcaaaaagACGTTAAAAGACGTTAAAGATGAAGTCAAAAACTTGGTC
ATACAAAACCCACCATCCCATCCAACAATAAAATGGCTTTTCGGATTAGT
TCTATCGGAGCTCGGTGAAAAAGGCGAACGCTCGTTTTTCGAAAAACTCT
ATTCGATCAAAGATGACCCTGTTCTTGAAGATACTGTGATTCTCAGTTCC
ATCAACTTTCTCACCAATGTCCAAAAGAAAATGCATCAGGAGATTGANTT
GTTCTTGAAGATACTGTGATTCTCAGTTCCATCAGTTTCCTCACCAATGT
CCAAAAGAAAATGCACCAGGAGATTGACGTCCTTCTTTTCTCGTGGACCA
AGAAATTAATCATATGCGTTGAAATCAAACGGACACTGACTATAAAAGCT
TTTGACCAGTTGGATAAATACCATAAGTTGATAGAAAAGAGGTTGAGTGA
TCAATTAGGACAAGGCTGGACGTACCATCCAGTCATTTATGTCGAGAAGG
ACAACCTGCTCTCCAAAAATCAACATTACATTGACCAAGAAACAGATTTG
AAATGTTGGTTATCCCCTTTGTTGGCAAAATATCCGACCGTTCCCTCTGG
AATACCTTTCATCCCAGCAGTAAATCAAGTTAAAGACCTCCTGAGAATCG
TTGTGTTTGCCATTAATGCTTCAAAAACAGCACCCATTACGACATCGAAC
TGGGTGGAGTATATCTCGCAAGCCATCGATACCGTCTGCACTACTGACAA
CATACTCTTTTACAGTCAGCGTCAACTTCCCATCATGAAGACAGACACTT
CTGAATTCAATAAGATCCTCTTTTATGCGCCTTACGGATGCGGCAAGTCT
TTCATCCTTCAggaaaaagcaaaacaattgAGTGGAATATCAAAGTACAA
AGAACGTGTTATGTATGTCATTGAGAGGGGTTATGAATTGATGATTGATG
ATTTAGAAACCCTTCTTGAGTGGAGATTGAAAGACGAATTGGGAAAAGAA
CATGGAGTTGACGTCTATGGATACAGACTCTACCATCTCGATGAAGAGCA
ACAAAAAGAGGACATGGAAAGGCTGACGAAGAGGATTCGAAGAAGAAACA
TCAAAGCTTTATTTATCGATGAGTGTCATATTACCGATTATCAATGGAAA
GAAATGATCATGAAAGTCAAACAACACGTTGATGTGATTTGGATTGCATC
AAACGGAATGGCTCATCATGATATTTTATCAGGTCGTGAAGATCTTTCGG
AGTATGACGATTTCATGGAATATGAACTTGACGTAAATCTAAGAAACTGT
GAAAGTATCGTTAGAGAGGCATTAAGCTTTGAAGAAAGAGATAGTTCGGT
GTATAAAGACGGTTTAGTACTTCCACCAATGAATCACCCTAATGGAAAGC
AACCCTACCCTTCCAGCTCGTTTGAAGATGCCATCACAAAAATGAGAAAG
ATAACGAACGATGGAGTGCTAGTGATATATGATATTTCATACGAGGAGGA
AGATCTTCAAACATTGAACACTATGCAATTGAAATGGAAAAGGTATGGAA
AACgtaaaaacaatttcaataaaGGTGAAAGTCCATATCAATTTCTCGTA
GACGGAAACATGTTATTGATTGACAATCAACTTATTTCCGGCTTCGAGTG
GAGTAACATCATCCTCATCATCTTTAAAGGAGATACAGGAATTATTGATG
ACCATCCATGTAATTCCATCATGAGATGTACCACGAATCTCACGATTGTT
GACGAATTTTGGTAACCATCCAAGTAATCGGATCATGAGATGCACGACAA
ATCTCACGATTGTTGACGAAAATGAATATTCTTCAGATGAAACCGATAGT
GATAGTGATATTTCTTCTGATGAAACCAATACTGAAGATTCTTCCGAtga
ttaaatttaaaagattAAGACTACTACAGTAtaattaaatataatttttg
aaattagttAGTACATAGAATTTTCGAGATaatcttttcagtttttgtta
cattttatcattttaaggtaacaaatattttctttgacaaCTAAAATGGA
GTCACGAATTGAGTATTTTTTTTGGAAGCAACATCGTTTTTCTTATTGGC
TTGCTCAAGCTCTAAAATGTGCAACTTTTATGTAACCTTTCAGGTTAATG
AATGG Run BLAST on NCBI protein sequence of TCONS_00013952-protein >TCONS_00013952-protein ID=TCONS_00013952-protein|Name=TCONS_00013952-protein|organism=Clytia hemisphaerica|type=polypeptide|length=484bp
MHQEIDVLLFSWTKKLIICVEIKRTLTIKAFDQLDKYHKLIEKRLSDQLG
QGWTYHPVIYVEKDNLLSKNQHYIDQETDLKCWLSPLLAKYPTVPSGIPF
IPAVNQVKDLLRIVVFAINASKTAPITTSNWVEYISQAIDTVCTTDNILF
YSQRQLPIMKTDTSEFNKILFYAPYGCGKSFILQEKAKQLSGISKYKERV
MYVIERGYELMIDDLETLLEWRLKDELGKEHGVDVYGYRLYHLDEEQQKE
DMERLTKRIRRRNIKALFIDECHITDYQWKEMIMKVKQHVDVIWIASNGM
AHHDILSGREDLSEYDDFMEYELDVNLRNCESIVREALSFEERDSSVYKD
GLVLPPMNHPNGKQPYPSSSFEDAITKMRKITNDGVLVIYDISYEEEDLQ
TLNTMQLKWKRYGKRKNNFNKGESPYQFLVDGNMLLIDNQLISGFEWSNI
ILIIFKGDTGIIDDHPCNSIMRCTTNLTIVDEFW Run BLAST on NCBI transcript from alignment at sc0000175:47577..51027+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013952 ID=TCONS_00013952|Name=TCONS_00013952|organism=Clytia hemisphaerica|type=transcript|length=3451bp|location=Sequence derived from alignment at sc0000175:47577..51027+ (Clytia hemisphaerica)
TAAGTGTGTTAATTTTAATATCTACTGTTTTTTCTATTTGcaagtttctt
taaaaaaataaaatggcaTCACAATTGAATTTACAACAGAAAATCAAAGC
ATTGAAATCGAAGAATATCGATCCATCAGAATGCACCCAACGAACATCAT
TATATCATCAAATATTGATAAATGCAAAATCCACCATCGACaaacaaaac
cgaaaattcaaCCTCGGGAATGGTCAGTTATTTACCGACCCTATTCGTGC
CGCTGATCATCTTCTCCAAAGAGAATATGCCAAGTCAGCATTATTTGACG
CCAACCGTCACGATCCAATTTTCATTCCCCCAGTTTTTCAATCACACCAA
TACGCAAAGAAGGATTCAACCGTACATCTCCTTGATTTCGATGTTAACAT
TTTAAACACTCTTAAGAAAAGTTTGGATAATTTGAAGAAGGATTCTCCAG
CCTTTTGGTTTACGGGAGAACTTCAAGCTTTCTATGATCTCCAATTAAAC
AACTCTAGCGGTAATGATATCAACGCAAGAGAATTCTATAATTGGATCTT
GAATGTCCAAATCATGTATCTCTTGATGGAAGAGATTGGCAATCAACCGA
TCCAAAGTTCTTTAAGAATGTTATGCTGCTGTCGTCAACCAAGTACAAAC
GATCTGACTTTACCATCAACAACCGAGGATAACAATACATTCATCCAAGC
ATGTATCCAGGAATTGGCTTTAATATCACCAGGATCAAAACTGgaacaaa
ctctcaaaaaggTAACTGATCAATTTTATTCTCAAAactgtaaaaattct
ttaatacaAGCACATGGAGACCTGTAttaaattgaatatttcaatttgca
aattgaattgtaaaaaatctttcatttcaTTTCCAGACGTTAAAAGACGT
TAAAGATGAAGTCAAAAACTTGGTCATACAAAACCCACCATCCCATCCAA
CAATAAAATGGCTTTTCGGATTAGTTCTATCGGAGCTCGGTGAAAAAGGC
GAACGCTCGTTTTTCGAAAAACTCTATTCGATCAAAGATGACCCTGTTCT
TGAAGATACTGTGATTCTCAGTTCCATCAACTTTCTCACCAATGTCCAAA
AGAAAATGCATCAGGAGATTGANTTGTTCTTGAAGATACTGTGATTCTCA
GTTCCATCAGTTTCCTCACCAATGTCCAAAAGAAAATGCACCAGGAGATT
GACGTCCTTCTTTTCTCGTGGACCAAGAAATTAATCATATGCGTTGAAAT
CAAACGGACACTGACTATAAAAGCTTTTGACCAGTTGGATAAATACCATA
AGTTGATAGAAAAGAGGTTGAGTGATCAATTAGGACAAGGCTGGACGTAC
CATCCAGTCATTTATGTCGAGAAGGACAACCTGCTCTCCAAAAATCAACA
TTACATTGACCAAGAAACAGATTTGAAATGTTGGTTATCCCCTTTGTTGG
CAAAATATCCGACCGTTCCCTCTGGAATACCTTTCATCCCAGCAGTAAAT
CAAGTTAAAGACCTCCTGAGAATCGTTGTGTTTGCCATTAATGCTTCAAA
AACAGCACCCATTACGACATCGAACTGGGTGGAGTATATCTCGCAAGCCA
TCGATACCGTCTGCACTACTGACAACATACTCTTTTACAGTCAGCGTCAA
CTTCCCATCATGAAGACAGACACTTCTGAATTCAATAAGATCCTCTTTTA
TGCGCCTTACGGATGCGGCAAGTCTTTCATCCTTCAggaaaaagcaaaac
aattgAGTGGAATATCAAAGTACAAAGAACGTGTTATGTATGTCATTGAG
AGGGGTTATGAATTGATGATTGATGATTTAGAAACCCTTCTTGAGTGGAG
ATTGAAAGACGAATTGGGAAAAGAACATGGAGTTGACGTCTATGGATACA
GACTCTACCATGTAAGTTGCATTTTGAATctaattttgaatctttttcta
attttaaccaaataaaaacGGCTTTGATCGAATGATCGCCTTCAAATTAT
ATTACAATATATTGTTTTATTGATTACAAACGATAATAGAATAACTGAta
agaaaaagtaaaagtaaaagaaaattcagaTCGTTTTAAGGCTACAACCT
AAGTTGCCAACACAGATTCATGATTTGCttatttcgttattttcatcTTG
AAAAAATGATTCTACACTTAATACTGTAAATAATTTAAGTTTACTGGTAT
TATTAAAGCAAAGTCAGAAACGATAAgtcaattaaaattttatcatgCAT
TTTTCTGTAAGAGACTTTTAGGATCCTTTGCATCCAAATGAAGAGATtta
cttaaaataaaatttttcttttctttcaacaGCTCGATGAAGAGCAACAA
AAAGAGGACATGGAAAGGCTGACGAAGAGGATTCGAAGAAGAAACATCAA
AGCTTTATTTATCGATGAGTGTCATATTACCGATTATCAATGGAAAGAAA
TGATCATGAAAGTCAAACAACACGTTGATGTGATTTGGATTGCATCAAAC
GGAATGGCTCATCATGATATTTTATCAGGTCGTGAAGATCTTTCGGAGTA
TGACGATTTCATGGAATATGAACTTGACGTAAATCTAAGAAACTGTGAAA
GTATCGTTAGAGAGGCATTAAGCTTTGAAGAAAGAGATAGTTCGGTGTAT
AAAGACGGTTTAGTACTTCCACCAATGAATCACCCTAATGGAAAGCAACC
CTACCCTTCCAGCTCGTTTGAAGATGCCATCACAAAAATGAGAAAGATAA
CGAACGATGGAGTGCTAGTGATATATGATATTTCATACGAGGAGGAAGAT
CTTCAAACATTGAACACTATGCAATTGAAATGGAAAAGGTATGGAAAACg
taaaaacaatttcaataaaGGTGAAAGTCCATATCAATTTCTCGTAGACG
GAAACATGTTATTGATTGACAATCAACTTATTTCCGGCTTCGAGTGGAGT
AACATCATCCTCATCATCTTTAAAGGAGATACAGGAATTATTGATGACCA
TCCATGTAATTCCATCATGAGATGTACCACGAATCTCACGATTGTTGACG
AATTTTGGTAACCATCCAAGTAATCGGATCATGAGATGCACGACAAATCT
CACGATTGTTGACGAAAATGAATATTCTTCAGATGAAACCGATAGTGATA
GTGATATTTCTTCTGATGAAACCAATACTGAAGATTCTTCCGAtgattaa
atttaaaagattAAGACTACTACAGTAtaattaaatataatttttgaaat
tagttAGTACATAGAATTTTCGAGATaatcttttcagtttttgttacatt
ttatcattttaaggtaacaaatattttctttgacaaCTAAAATGGAGTCA
CGAATTGAGTATTTTTTTTGGAAGCAACATCGTTTTTCTTATTGGCTTGC
TCAAGCTCTAAAATGTGCAACTTTTATGTAACCTTTCAGGTTAATGAATG
G Coding sequence (CDS) from alignment at sc0000175:47577..51027+ >TCONS_00013952 ID=TCONS_00013952|Name=TCONS_00013952|organism=Clytia hemisphaerica|type=CDS|length=2910bp|location=Sequence derived from alignment at sc0000175:47577..51027+ (Clytia hemisphaerica)
ATGCACCAGGAGATTGACGTCCTTCTTTTCTCGTGGACCAAGAAATTAAT
CATATGCGTTGAAATCAAACGGACACTGACTATAAAAGCTTTTGACCAGT
TGGATAAATACCATAAGTTGATAGAAAAGAGGTTGAGTGATCAATTAGGA
CAAGGCTGGACGTACCATCCAGTCATTTATGTCGAGAAGGACAACCTGCT
CTCCAAAAATCAACATTACATTGACCAAGAAACAGATTTGAAATGTTGGT
TATCCCCTTTGTTGGCAAAATATCCGACCGTTCCCTCTGGAATACCTTTC
ATCCCAGCAGTAAATCAAGTTAAAGACCTCCTGAGAATCGTTGTGTTTGC
CATTAATGCTTCAAAAACAGCACCCATTACGACATCGAACTGGGTGGAGT
ATATCTCGCAAGCCATCGATACCGTCTGCACTACTGACAACATACTCTTT
TACAGTCAGCGTCAACTTCCCATCATGAAGACAGACACTTCTGAATTCAA
TAAGATCCTCTTTTATGCGCCTTACGGATGCGGCAAGTCTTTCATCCTTC
AggaaaaagcaaaacaattgAGTGGAATATCAAAGTACAAAGAACGTGTT
ATGTATGTCATTGAGAGGGGTTATGAATTGATGATTGATGATTTAGAAAC
CCTTCTTGAGTGGAGATTGAAAGACGAATTGGGAAAAGAACATGGAGTTG
ACGTCTATGGATACAGACTCTACCATCTCGATGAAGAGCAACAAAAAGAG
GACATGGAAAGGCTGACGAAGAGGATTCGAAGAAGAAACATCAAAGCTTT
ATTTATCGATGAGTGTCATATTACCGATTATCAATGGAAAGAAATGATCA
TGAAAGTCAAACAACACGTTGATGTGATTTGGATTGCATCAAACGGAATG
GCTCATCATGATATTTTATCAGGTCGTGAAGATCTTTCGGAGTATGACGA
TTTCATGGAATATGAACTTGACGTAAATCTAAGAAACTGTGAAAGTATCG
TTAGAGAGGCATTAAGCTTTGAAGAAAGAGATAGTTCGGTGTATAAAGAC
GGTTTAGTACTTCCACCAATGAATCACCCTAATGGAAAGCAACCCTACCC
TTCCAGCTCGTTTGAAGATGCCATCACAAAAATGAGAAAGATAACGAACG
ATGGAGTGCTAGTGATATATGATATTTCATACGAGGAGGAAGATCTTCAA
ACATTGAACACTATGCAATTGAAATGGAAAAGGTATGGAAAACgtaaaaa
caatttcaataaaGGTGAAAGTCCATATCAATTTCTCGTAGACGGAAACA
TGTTATTGATTGACAATCAACTTATTTCCGGCTTCGAGTGGAGTAACATC
ATCCTCATCATCTTTAAAGGAGATACAGGAATTATTGATGACCATCCATG
TAATTCCATCATGAGATGTACCACGAATCTCACGATTGTTGACGAATTTT
GGTAAATGCACCAGGAGATTGACGTCCTTCTTTTCTCGTGGACCAAGAAA
TTAATCATATGCGTTGAAATCAAACGGACACTGACTATAAAAGCTTTTGA
CCAGTTGGATAAATACCATAAGTTGATAGAAAAGAGGTTGAGTGATCAAT
TAGGACAAGGCTGGACGTACCATCCAGTCATTTATGTCGAGAAGGACAAC
CTGCTCTCCAAAAATCAACATTACATTGACCAAGAAACAGATTTGAAATG
TTGGTTATCCCCTTTGTTGGCAAAATATCCGACCGTTCCCTCTGGAATAC
CTTTCATCCCAGCAGTAAATCAAGTTAAAGACCTCCTGAGAATCGTTGTG
TTTGCCATTAATGCTTCAAAAACAGCACCCATTACGACATCGAACTGGGT
GGAGTATATCTCGCAAGCCATCGATACCGTCTGCACTACTGACAACATAC
TCTTTTACAGTCAGCGTCAACTTCCCATCATGAAGACAGACACTTCTGAA
TTCAATAAGATCCTCTTTTATGCGCCTTACGGATGCGGCAAGTCTTTCAT
CCTTCAggaaaaagcaaaacaattgAGTGGAATATCAAAGTACAAAGAAC
GTGTTATGTATGTCATTGAGAGGGGTTATGAATTGATGATTGATGATTTA
GAAACCCTTCTTGAGTGGAGATTGAAAGACGAATTGGGAAAAGAACATGG
AGTTGACGTCTATGGATACAGACTCTACCATCTCGATGAAGAGCAACAAA
AAGAGGACATGGAAAGGCTGACGAAGAGGATTCGAAGAAGAAACATCAAA
GCTTTATTTATCGATGAGTGTCATATTACCGATTATCAATGGAAAGAAAT
GATCATGAAAGTCAAACAACACGTTGATGTGATTTGGATTGCATCAAACG
GAATGGCTCATCATGATATTTTATCAGGTCGTGAAGATCTTTCGGAGTAT
GACGATTTCATGGAATATGAACTTGACGTAAATCTAAGAAACTGTGAAAG
TATCGTTAGAGAGGCATTAAGCTTTGAAGAAAGAGATAGTTCGGTGTATA
AAGACGGTTTAGTACTTCCACCAATGAATCACCCTAATGGAAAGCAACCC
TACCCTTCCAGCTCGTTTGAAGATGCCATCACAAAAATGAGAAAGATAAC
GAACGATGGAGTGCTAGTGATATATGATATTTCATACGAGGAGGAAGATC
TTCAAACATTGAACACTATGCAATTGAAATGGAAAAGGTATGGAAAACgt
aaaaacaatttcaataaaGGTGAAAGTCCATATCAATTTCTCGTAGACGG
AAACATGTTATTGATTGACAATCAACTTATTTCCGGCTTCGAGTGGAGTA
ACATCATCCTCATCATCTTTAAAGGAGATACAGGAATTATTGATGACCAT
CCATGTAATTCCATCATGAGATGTACCACGAATCTCACGATTGTTGACGA
ATTTTGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013952-exon-sc0000175-1491911889:47577..48337 | TCONS_00013952-exon-sc0000175-1491911889:47577..48337 | Clytia hemisphaerica | exon |
| TCONS_00013952-exon-sc0000175-1510915933:47577..48337 | TCONS_00013952-exon-sc0000175-1510915933:47577..48337 | Clytia hemisphaerica | exon |
| TCONS_00013952-exon-sc0000175-1575043694:47577..48337 | TCONS_00013952-exon-sc0000175-1575043694:47577..48337 | Clytia hemisphaerica | exon |
| TCONS_00013952-exon-sc0000175-1491911889:48463..49487 | TCONS_00013952-exon-sc0000175-1491911889:48463..49487 | Clytia hemisphaerica | exon |
| TCONS_00013952-exon-sc0000175-1510915933:48463..49487 | TCONS_00013952-exon-sc0000175-1510915933:48463..49487 | Clytia hemisphaerica | exon |
| TCONS_00013952-exon-sc0000175-1575043694:48463..49487 | TCONS_00013952-exon-sc0000175-1575043694:48463..49487 | Clytia hemisphaerica | exon |
| TCONS_00013952-exon-sc0000175-1491911889:49909..51027 | TCONS_00013952-exon-sc0000175-1491911889:49909..51027 | Clytia hemisphaerica | exon |
| TCONS_00013952-exon-sc0000175-1510915933:49909..51027 | TCONS_00013952-exon-sc0000175-1510915933:49909..51027 | Clytia hemisphaerica | exon |
| TCONS_00013952-exon-sc0000175-1575043694:49909..51027 | TCONS_00013952-exon-sc0000175-1575043694:49909..51027 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000175 | supercontig | sc0000175:47577..51027 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
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