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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013903 ID=TCONS_00013903|Name=TCONS_00013903|organism=Clytia hemisphaerica|type=transcript|length=4199bp
ttttacagacATAATGAAATGTCTTCTAAAGTTAATAATATTATTATACC
TATCACGTGACACAAGCCATTCACCCTTACAAGGGATATGTCCATCAAGG
CAGTATTGCCATTCGTGCCAACGAGGGAATGTCATCTGCACAGTACCTTT
CAATAATATCACTGCGCTGCAAACTGGACCATTTGCTAAACCTATCGATA
AATTGATACTTGATGGATGTCCCGATAACTTCACCAGTTCAAATACTCAA
CTTAACGTCACCTCTTTTCACATTAATTGCACCATAAACGATGACTATTT
TACATTATTTCATCGATGGAAcctaaaagaaatcaaagacaTTAATCGCA
ATGAACTTTATACCCAAGTTAGCCCTGGCATTAATCAAACGTGTCGGCAA
GCATGTGGTGACAATAAAATGCCAGTCAATGGGACATCATCTTGTATATG
TGTAGGAGATGCAAACGAAGTTGAAGCTGATAACAGTAATTTTTATTATT
ACATCATTATTGGTGGTGTTAGTGCCTTCACCTTATTGGTCAATTTGATA
TTCGTCATCGGTATGTGCACGATGGTTCAATCATCTCTTGTCGGCGTCTT
CGGGATCGCTTTAATGTTCTTTAATATACTGTTAGCTTTTTATGGCCTTT
CTATGGCAATATATTTGACACAAAATCACACCTATTGGCACCATCAATTC
TGCCAAGGGTTCACTTCGGTCAAATTATTTGCTCTTGGTGGTTCAGTGTG
GACTATGTTGATGTTAACTTTCCACCGAAGTGTTCGTGGTGATATCGAAA
CTGAACGAGAAGCCATATTCAAAGGCATCGTTTACATTTTAGAAGGGTTA
ATGCTATCAGGTGTTTTAGCAGTTATGTCATGGATTAAACTTGACAAATG
GAATTATTTATGTATTGTTTTTGAGCCTAAAACTACAGTAGACTGGCTTT
TAACTGGGATCGAGTTATTGTATTATTTCATGATGCTATGTCTAGTACTC
AGGTTCCCCTATCACCAAataaggaagaagaaaaggacTGGGAATCAGAG
AAGAGACACAAGTTTACCCATATTTTTAATGGTGATAATATGTTTTTTGG
TATGGGTTGGAAGTTACGGTGTTACGATGCATTGGTTTGACTACTTGTTT
ACGGAGAAAATACGCAGGGTCATTCGAGTAGTTGCTATCATTTTCCCTGT
ATCACTTCAACCAATCATATTCATTTTACGAAACACGTGTTGTTGTTTAT
GTCGTGATTCGCCATGTTCGAAAAAGAAAGATAGTGATCTGAAAGTATGC
GAGTGTATTCCACCCGACCAGTGTGATATCTGTGACAATGAAGATTACGT
CATGAGGTATTCAGCCAATGAAACGTACGAGAAAGAACAACCGAATGGTG
ACGTCAAGGAAATGGTCGACTTGAAGGCCGCCAAGAAagcgaagaaaaag
aaagagaaaaaagaaaagaaggaaaagaagaaagGAAAAGGTGGTAAATT
CTTCACACCGAAATCGATTGAGCGATCACCTGTTACCAAACATAAGGAAA
CCTCCTTCAATGAGGATGGAGCTGATTCAGACCAAGGTGGAGATGCCGTT
GCAGAAACACCTTTGATTGATAAAGACAACAAAACAGAGGAAGCAGACCG
TAAAGAAGAGGATACAGCCCAACGAAGGAGTGTAGGTATCCCTACAGATA
GTACTCCGCTTCTAGATGATACCGATGGAGAGGCTAGGCAACCACCGAAA
GCTACCCCTGATGGAACCCCAAAAAAGTCGGGAGTAGCCCCTGATTATCC
TTCCTTCGTACACATGGACTCCGCTATTGACGTGGACAGCCTTCCTAAGG
AAAAAGCTCCAATCAAACTGTCAAAATTAGCAGCTACCAACAACGCTGTA
AAAGCCAAAAAACAACCACAGCAGCCACAACAACTACAACCGGACCTATt
agaagaagaaagaaagtcACGCGGACCGACTTTTTTCCCGTTAGCCGAAA
AGAAGGATGTCCCAGAACCGAAACCAtccaaaaagaaaacgaaaaagaaa
tccGATAAATCGAACGGAATGAAAAACGGGGAAAAAGATGCCCCGAAAAA
GTCAAAACCAAAGAAACCGAAGAAAAATGAACGTGAAAATGGAGAAAAAG
CTCCAAATAGAAACTCTATTGTTAGTTTAGAGTGGGACCATTATTCCGAT
TCTTCATCAGGATCGGTTTCTCGTTCATCCGATTATTTCCCCGATGATTT
GACCGTTGTTCCCGTAACAGAGACTGAGGAGAATAATTCAGATCAAAAGC
AAACCACGAACACTCAATCCAATGGGATTTCCCGAACCGGTAGTAAGAAA
TCCAATAACATGGAATGGGACCCAACCGGGGGTGTCGAATcaaatgatga
acttttgaaaaataataaaaacaaaagtgaaatTCCGACAGCAAAAACAA
ATGGAAAAATAGCGACTGCGGCTTCGTGATGGAAAAGTGATGTTAAGTTT
TGCGGTGTTAATCACTTTAGTGTTTTATGCTAGCCGTTGGATGTAAGGAG
GGAGATTACGGTTTGAATCTCAGTTTATAACATTTCGACATAAAAAAGGT
TCATGGCTTGACTAAACACAGAGCTTTAAATGTGCAGCATATCAAgttaa
aaagtgaagaaattaaTCTTGCAATTATGTTACCAATATGAAGTAACTTC
ATATCAAGAAGTATTTGGGCTAAATGGGGCGAAACTTGGATGGCATCTTT
GATTTGAACACCTTGACCTTAAAAAGAAACAAGATAGAGCACTTTTATTT
AAGTGGACTGCAGAGGTATANCGTGAAAATGGAGAAAAAGCTCCAAATAG
AAACTCTATTGTTAGTTTAGAGTGGGACCATTATTCCGATTCTTCATCAG
GATCTGTTTCTCGTTCATCCGATTATTTCCCCGATGATTTGACCGTTGTT
CCCGTAACAGAGACTGAGGAGAATAATTCAGATCAAAAGCAAACCACGAA
CACTCAATCCAATGGGATTTCCCGAACCGGTAGTAAGAAATCCAATAACA
TGGAATGGGACCCAACCGGGGGTGTCGAATcaaatgatgaacttttgaaa
aataataaaaacaaaagtgaaatTCCGACAGCAAAAACAAATGGAAAAAT
AGCGACTGCGGCTTCGTGATGGAAAAGTGATGTTAAGTTTTGCGGTGTTA
ATCACTTTAGTGTTTTATGCTAGCCGTTGGATGTAAGGAGGGAGATTACG
GTTTGAATCTCAGTTTATAACATTTCGACATAAAAAAGGTTCATGGCTTG
ACTAAACACAGAGCTTTAAATGTGCAGCATATCAAgttaaaaagtgaaga
aattaaTCTTGCAATTATGTTACCAATATGAAGTAACTTCATATCAAGAA
GTATTTGGGCTAAATGGGGCGAAACTTGGATGGCATCTTTGATTTGAACA
CCTTGACCTTAAAAAGAAACAAGATAGAGCACTTTTATTTAAGTGGACTG
CAGAGGTATAGAGTGACTCTGAGCGAATAAGTGTTTAAATTTAGTATACT
TTAGAAAACTTTTTGCTGATTGGTCATAAACAAACTTTAAAGGTCCCGAA
ACGACTAAAATACCTGGTTGTATTTTAAGAGTATTGATAAACGGGCAAAG
TGTATTGAAAGATTCTAAATGATGTGACCATTCAGCAAAATGTAAATTTG
TTATAaatagttttaatttttaatttattatttcCTATGCTATTTCCTTC
GGGAAAACCGTACTACCCTTCTTTATTCCCGGCTTTTTCGGTTTGCCTAG
TAGATTTGTTTGTATTTATGATAAATGCGAGCAGAAATTTCTAAAAGAAT
GTAATGTCTTTCATTTCATAAGCCTTCCAAGTGGGTTGGTAACTAATCAG
TCCGTGcatggaagaagaaaaaagagggtaataaaataattgaaatttca
ttcaaaaataaaagaattttaatattttcatttaaaaaaatttatttttt
atattttttgttaaattgaTAATGATATTAATAATATTATACTATATCAA
ATactcttttttcctttttgggATAGACGTATACTCCGTTACAACCCTCA
ATTTTCATAATCACCATGACAACCGATTTATCTGTATACCTCATTGATTA
TGAATAAGTTCGGTTTCTTTTTAAAAGCGGTTTCTTCAAACAATGTTAT Run BLAST on NCBI transcript from alignment at sc0000174:590228..595063- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013903 ID=TCONS_00013903|Name=TCONS_00013903|organism=Clytia hemisphaerica|type=transcript|length=4836bp|location=Sequence derived from alignment at sc0000174:590228..595063- (Clytia hemisphaerica)
TTTTACAGACATAATGAAATGTCTTCTAAAGTTAATAATATTATTATACC
TATCACGTGACACAAGCCATTCACCCTTACAAGGGATATGTCCATCAAGG
CAGTATTGCCATTCGTGCCAACGAGGGAATGTCATCTGCACAGTACCTTT
CAATAATATCACTGCGCTGCAAACTGGACCATTTGCTAAACCTATCGATA
AATTGTAAGTATTTCCTCAAGTTTTATGTAAACAACTCCCTGCCTTTTAT
GAATTTCTTTATTTTGATTTCGTGTAACATGCATGAAAATTTATCAAGTA
AACAATCTCTCTGATTGGCTAGAAAACGTGCATATTAATCATCCAATATA
ACAGTAGAGAATTCGCTTGAAAAACGTGTGTTTTTAGTAATTTTTTATTG
TACTCCTTGCTTAGAACCGAATACTATCTATGTTTTACCCTTTTCGAACT
AAGGGGGGCAGCTAAAAATTTCAAGGGAACAATAGTTTTTTGAGCGAACA
AAGAAAATTGTCAACAGTTGCCTGACAAGGATCACGTGTGCTATATTTCA
TTCAAAAAAGACAAACTAGATCAACACTCAAGGGACGTTGCTAGTTAAAC
GACTTTGCTCTGAAGTACTCGGGCGGGAATATTTTTCAGCTAAGTCGAAA
CGGCAAATAAAATTTTTCCAATATTCATTCAATATCCATAAGGTTCATGT
AAAGCTTGAAAGGTTTTGTGCACCAGAGTAAAATAAAAACTTGTGGGTGA
TTATTTCAGATGGTGAATATTTTCATTTTGGAGTGTGACATATAAATCAT
ATTGAATAGATTTTTCATTGTTTTCTTCCTCTCAAATTCAGGATACTTGA
TGGATGTCCCGATAACTTCACCAGTTCAAATACTCAACTTAACGTCACCT
CTTTTCACATTAATTGCACCATAAACGATGACTATTTTACATTATTTCAT
CGATGGAACCTAAAAGAAATCAAAGACATTAATCGCAATGAACTTTATAC
CCAAGTTAGCCCTGGCATTAATCAAACGTGTCGGCAAGCATGTGGTGACA
ATAAAATGCCAGTCAATGGGACATCATCTTGTATATGTGTAGGAGATGCA
AACGAAGTTGAAGCTGATAACAGTAATTTTTATTATTACATCATTATTGG
TGGTGTTAGTGCCTTCACCTTATTGGTCAATTTGATATTCGTCATCGGTA
TGTGCACGATGGTTCAATCATCTCTTGTCGGCGTCTTCGGGATCGCTTTA
ATGTTCTTTAATATACTGTTAGCTTTTTATGGCCTTTCTATGGCAATATA
TTTGACACAAAATCACACCTATTGGCACCATCAATTCTGCCAAGGGTTCA
CTTCGGTCAAATTATTTGCTCTTGGTGGTTCAGTGTGGACTATGTTGATG
TTAACTTTCCACCGAAGTGTTCGTGGTGATATCGAAACTGAACGAGAAGC
CATATTCAAAGGCATCGTTTACATTTTAGAAGGGTTAATGCTATCAGGTG
TTTTAGCAGTTATGTCATGGATTAAACTTGACAAATGGAATTATTTATGT
ATTGTTTTTGAGCCTAAAACTACAGTAGACTGGCTTTTAACTGGGATCGA
GTTATTGTATTATTTCATGATGCTATGTCTAGTACTCAGGTTCCCCTATC
ACCAAATAAGGAAGAAGAAAAGGACTGGGAATCAGAGAAGAGACACAAGT
TTACCCATATTTTTAATGGTGATAATATGTTTTTTGGTATGGGTTGGAAG
TTACGGTGTTACGATGCATTGGTTTGACTACTTGTTTACGGAGAAAATAC
GCAGGGTCATTCGAGTAGTTGCTATCATTTTCCCTGTATCACTTCAACCA
ATCATATTCATTTTACGAAACACGTGTTGTTGTTTATGTCGTGATTCGCC
ATGTTCGAAAAAGAAAGATAGTGATCTGAAAGTATGCGAGTGTATTCCAC
CCGACCAGTGTGATATCTGTGACAATGAAGATTACGTCATGAGGTATTCA
GCCAATGAAACGTACGAGAAAGAACAACCGAATGGTGACGTCAAGGAAAT
GGTCGACTTGAAGGCCGCCAAGAAAGCGAAGAAAAAGAAAGAGAAAAAAG
AAAAGAAGGAAAAGAAGAAAGGAAAAGGTGGTAAATTCTTCACACCGAAA
TCGATTGAGCGATCACCTGTTACCAAACATAAGGAAACCTCCTTCAATGA
GGATGGAGCTGATTCAGACCAAGGTGGAGATGCCGTTGCAGAAACACCTT
TGATTGATAAAGACAACAAAACAGAGGAAGCAGACCGTAAAGAAGAGGAT
ACAGCCCAACGAAGGAGTGTAGGTATCCCTACAGATAGTACTCCGCTTCT
AGATGATACCGATGGAGAGGCTAGGCAACCACCGAAAGCTACCCCTGATG
GAACCCCAAAAAAGTCGGGAGTAGCCCCTGATTATCCTTCCTTCGTACAC
ATGGACTCCGCTATTGACGTGGACAGCCTTCCTAAGGAAAAAGCTCCAAT
CAAACTGTCAAAATTAGCAGCTACCAACAACGCTGTAAAAGCCAAAAAAC
AACCACAGCAGCCACAACAACTACAACCGGACCTATTAGAAGAAGAAAGA
AAGTCACGCGGACCGACTTTTTTCCCGTTAGCCGAAAAGAAGGATGTCCC
AGAACCGAAACCATCCAAAAAGAAAACGAAAAAGAAATCCGATAAATCGA
ACGGAATGAAAAACGGGGAAAAAGATGCCCCGAAAAAGTCAAAACCAAAG
AAACCGAAGAAAAATGAACGTGAAAATGGAGAAAAAGCTCCAAATAGAAA
CTCTATTGTTAGTTTAGAGTGGGACCATTATTCCGATTCTTCATCAGGAT
CGGTTTCTCGTTCATCCGATTATTTCCCCGATGATTTGACCGTTGTTCCC
GTAACAGAGACTGAGGAGAATAATTCAGATCAAAAGCAAACCACGAACAC
TCAATCCAATGGGATTTCCCGAACCGGTAGTAAGAAATCCAATAACATGG
AATGGGACCCAACCGGGGGTGTCGAATCAAATGATGAACTTTTGAAAAAT
AATAAAAACAAAAGTGAAATTCCGACAGCAAAAACAAATGGAAAAATAGC
GACTGCGGCTTCGTGATGGAAAAGTGATGTTAAGTTTTGCGGTGTTAATC
ACTTTAGTGTTTTATGCTAGCCGTTGGATGTAAGGAGGGAGATTACGGTT
TGAATCTCAGTTTATAACATTTCGACATAAAAAAGGTTCATGGCTTGACT
AAACACAGAGCTTTAAATGTGCAGCATATCAAGTTAAAAAGTGAAGAAAT
TAATCTTGCAATTATGTTACCAATATGAAGTAACTTCATATCAAGAAGTA
TTTGGGCTAAATGGGGCGAAACTTGGATGGCATCTTTGATTTGAACACCT
TGACCTTAAAAAGAAACAAGATAGAGCACTTTTATTTAAGTGGACTGCAG
AGGTATANCGTGAAAATGGAGAAAAAGCTCCAAATAGAAACTCTATTGTT
AGTTTAGAGTGGGACCATTATTCCGATTCTTCATCAGGATCTGTTTCTCG
TTCATCCGATTATTTCCCCGATGATTTGACCGTTGTTCCCGTAACAGAGA
CTGAGGAGAATAATTCAGATCAAAAGCAAACCACGAACACTCAATCCAAT
GGGATTTCCCGAACCGGTAGTAAGAAATCCAATAACATGGAATGGGACCC
AACCGGGGGTGTCGAATCAAATGATGAACTTTTGAAAAATAATAAAAACA
AAAGTGAAATTCCGACAGCAAAAACAAATGGAAAAATAGCGACTGCGGCT
TCGTGATGGAAAAGTGATGTTAAGTTTTGCGGTGTTAATCACTTTAGTGT
TTTATGCTAGCCGTTGGATGTAAGGAGGGAGATTACGGTTTGAATCTCAG
TTTATAACATTTCGACATAAAAAAGGTTCATGGCTTGACTAAACACAGAG
CTTTAAATGTGCAGCATATCAAGTTAAAAAGTGAAGAAATTAATCTTGCA
ATTATGTTACCAATATGAAGTAACTTCATATCAAGAAGTATTTGGGCTAA
ATGGGGCGAAACTTGGATGGCATCTTTGATTTGAACACCTTGACCTTAAA
AAGAAACAAGATAGAGCACTTTTATTTAAGTGGACTGCAGAGGTATAGAG
TGACTCTGAGCGAATAAGTGTTTAAATTTAGTATACTTTAGAAAACTTTT
TGCTGATTGGTCATAAACAAACTTTAAAGGTCCCGAAACGACTAAAATAC
CTGGTTGTATTTTAAGAGTATTGATAAACGGGCAAAGTGTATTGAAAGAT
TCTAAATGATGTGACCATTCAGCAAAATGTAAATTTGTTATAAATAGTTT
TAATTTTTAATTTATTATTTCCTATGCTATTTCCTTCGGGAAAACCGTAC
TACCCTTCTTTATTCCCGGCTTTTTCGGTTTGCCTAGTAGATTTGTTTGT
ATTTATGATAAATGCGAGCAGAAATTTCTAAAAGAATGTAATGTCTTTCA
TTTCATAAGCCTTCCAAGTGGGTTGGTAACTAATCAGTCCGTGCATGGAA
GAAGAAAAAAGAGGGTAATAAAATAATTGAAATTTCATTCAAAAATAAAA
GAATTTTAATATTTTCATTTAAAAAAATTTATTTTTTATATTTTTTGTTA
AATTGATAATGATATTAATAATATTATACTATATCAAATACTCTTTTTTC
CTTTTTGGGATAGACGTATACTCCGTTACAACCCTCAATTTTCATAATCA
CCATGACAACCGATTTATCTGTATACCTCATTGATTATGAATAAGTTCGG
TTTCTTTTTAAAAGCGGTTTCTTCAAACAATGTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00013903-exon-sc0000174-1575043694:594860..595063 | TCONS_00013903-exon-sc0000174-1575043694:594860..595063 | Clytia hemisphaerica | exon |
| TCONS_00013903-exon-sc0000174-1575043694:590228..594222 | TCONS_00013903-exon-sc0000174-1575043694:590228..594222 | Clytia hemisphaerica | exon |
| TCONS_00013903-exon-sc0000174-1510915933:594860..595063 | TCONS_00013903-exon-sc0000174-1510915933:594860..595063 | Clytia hemisphaerica | exon |
| TCONS_00013903-exon-sc0000174-1510915933:590228..594222 | TCONS_00013903-exon-sc0000174-1510915933:590228..594222 | Clytia hemisphaerica | exon |
| TCONS_00013903-exon-sc0000174-1491911889:594860..595063 | TCONS_00013903-exon-sc0000174-1491911889:594860..595063 | Clytia hemisphaerica | exon |
| TCONS_00013903-exon-sc0000174-1491911889:590228..594222 | TCONS_00013903-exon-sc0000174-1491911889:590228..594222 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000174 | supercontig | sc0000174:590228..595063 - |
Blast
The following BLAST results are available for this feature:
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