TCONS_00013894 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013894
Unique NameTCONS_00013894
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2238

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013894 ID=TCONS_00013894|Name=TCONS_00013894|organism=Clytia hemisphaerica|type=transcript|length=2238bp
CTCGAACCGCTGACCGCTAGGGTGGAGACAGGTCGACCGCTGACCAACTA
CAAATTTGTTGAGTCACgtgatttcaatgtttttattttgcagacgccat
ctttaattttagcaaaacgacttgaaaattttttccagagGCAAGCACAA
AAAACAGGAGACGACCGAAGAAAAACAGAGAAACTTAAACCAACCAAAAA
ATATTTACGACCACCGATCAACCTTGAGTTCTTCATCTTGGTACGAGGCA
TTATGAGGTGGGAGTATAAAGAAGAACACGCCTTTGAAAGAAGAAGATCA
GAGGGAGAGAAAATTAGAAGGAAGTATCCAGATAGAGTTCCAgtaatCGT
TGAAAAATCCCCAAAAGCAAAGATTGGCGATTTGGACAAAAAGAAGTACT
TGGTACCATCTGATTTAACAGTCGGacaattttattttctgattcGCAAA
CGAATTCATCTAAGGGCCGAAGACGCTCTCTTTTTCTTCGTAAACAACAC
CATCCCTCCAACGTCTGCAACAATGGGTGCTTTATACCAAGAACATCACG
AagaagacttttttctttacgttGCCTATAGTGATGAAAGTGTTTACGGT
GGCTCTCCTTCATTGGTGTAAATAATTTGTCTTTTTCATGCGTGGTTAAC
AAGTTTCTGGTCGAATATACAAGATTGGCCTGCAATTAAATGTGGCTTGG
TCAAAGTGAAGTTTTTCATTCTCAACTATTTATAGAAAAAATGTATTTag
attgatatttttattatcTGAACTTCTTTGTTTTACAATAGAATTAATGA
Aagtttttacttcaaatttccatatttttttctgcaatctttggttttct
ttttgtttggattgaaaattatttGGAGCTTTTTCTATGTACGAATGGCC
AGGAATGGCTATTTCTGTTTTCAAGTTGTTAGTTTTGTACCTATTTTTTG
GGCCTGGGCTTCTTTGACATCACATTAACTCAATTAGTATGCTATGTAGT
GCTATATTATTTAGTTTTAGATAATCAAAACTTGTTTATCTTTAAGAATT
TAAAGTATAGAGAATAGTAGATTTTGCAGTTTTTTGTTCAATTGGGAAAG
TTGTCAATAAGttttacttttaacttttttttgtgcattttaatttggtt
tgatttttttatttaagtttcATTTATATATGCATTTCGAACACATCACG
CGGCATTAGTGGCATCTGTTTTACAATTGCTCTGATAACGTACACCTGTA
CTTACTTGGACGTTTAAGGAACTTGTACTCATTTAAATTTGTCGGTTCGA
ATCTGTATATTCGCttcaatttttatgtttttgtgttgttgtgtttaatt
taaaagaaataatcaccttgtttatttttatttttgcatcATTATATTAT
TACGTTTTAAGTTTGTTTGTATTTATGTaaacattgaaaagaaaaaatac
ttTNgtttccaaatttttgtaacccttagagagactttgaaaggtgaaaa
acccgacccttaccgtccgcacatacccagcacctatttttgcctaagta
cccccccccggggtagTGCTATATTATTTAGTTTTAGATAATCAAAACTG
GTTTATCTTTAAGAATTTAAAGTATAGAGAATAGTAGATTTTGCAGTTTT
TTGTTCAATTGGGAAAGTTGTCAATAAGttttacttttaacttttttttg
tgcattttaatttggtttgatttttttatttaagtttcATTTATATATGC
ATTTCGAACACATCACGCGGCATTAGTGGCATCTGTTTTACAATTGCTCT
GATAACGTACACCTGTACTTACTTGGACGTTTAAGGAACTTGTACTCATT
TAAATTTGTCGGTTCGAATCTGTATATTCGCttcaatttttatgtttttg
tgttgttgtgtttaatttaaaagaaataatcaccttgtttatttttattt
ttgcatcATTATATTATTACGTTTTAAGTTTGTTTGTATTTATGTaaaca
ttgaaaagaaaaaatacttTCTAGATTATCAATAAAATATCTCGTTTTAT
ATTAGTAGTTAAACAAATAGGAAAATATACATAAAAATTGTCATTATTTG
TAAATTTGAAGCTAcgttatataaaaagaaatgaaTAAGCATTATAACTT
TAGAATTTAAGTCGATGTTTTGCCTGATTTTTGCATAATTCTTTATAGAT
CAACATCAttagcttgaaaaaaaaaacatttgactcGA
Run BLAST on NCBI

protein sequence of TCONS_00013894-protein

>TCONS_00013894-protein ID=TCONS_00013894-protein|Name=TCONS_00013894-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
LEPLTARVETGRPLTNYKFVESRDFNVFILQTPSLILAKRLENFFQRQAQ
KTGDDRRKTEKLKPTKKYLRPPINLEFFILVRGIMRWEYKEEHAFERRRS
EGEKIRRKYPDRVPVIVEKSPKAKIGDLDKKKYLVPSDLTVGQFYFLIRK
RIHLRAEDALFFFVNNTIPPTSATMGALYQEHHEEDFFLYVAYSDESVYG
GSPSLV
Run BLAST on NCBI

transcript from alignment at sc0000174:489414..496624-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013894 ID=TCONS_00013894|Name=TCONS_00013894|organism=Clytia hemisphaerica|type=transcript|length=7211bp|location=Sequence derived from alignment at sc0000174:489414..496624- (Clytia hemisphaerica)
CTCGAACCGCTGACCGCTAGGGTGGAGACAGGTCGACCGCTGACCAACTA
CAAATTTGTTGAGTCACGTGATTTCAATGTTTTTATTTTGCAGACGCCAT
CTTTAATTTTAGCAAAACGACTTGAAAATTTTTTCCAGAGGCAAGCACAA
AAAACAGGAGACGACCGAAGAAAAACAGAGAAACTTAAACCAACCAAAAA
ATATTTACGACCACCGATCAACCTTGAGTTCTTCATCTTGGTACGAGGCA
TTATGAGGTGGGAGTATAAAGAAGAACACGCCTTTGAAAGAAGAAGATCA
GAGGGAGAGAAAATTAGAAGGAAGTATCCAGATAGAGTTCCAGTAAGTTT
TATTACATTTATTTTGCTGTCTACCTAGTGTGCAGAGGCAGAGGGGACTG
AACNACCCGTTTGATATTCAATGTCCGCTACTAATTGGAAGCTAAAATAA
GGGTTTTTGCCATTTCATGCGAAAAAATTTGTCCGCTAATCAGAGGGTCC
GCTAATTGAGTGTCCGCCTTTTAGAAACTTTTTTATGAGGATTTGACTAT
AGGAAACGGCCGGGGAAAATGAAATTGTCCGCTAATCAGAGGTGTCCCCC
TTTAAGAGTGTCCGTTAATTAGAGGTTTTACTGTATGCCTATCGTGTATA
AAATTCCCGGGTGGCCTGCTTCAATCACCTCGAGCCTTTCAAATTTTCTA
ATAAACACTCAACAAAACTGCCTGCCAATTTTTTATCGGAAAAAGACCAA
TATGCAATATAGTCCGGGCGAGACTCCCGGTATAATTGAAATGAAAAAAG
ACAATGTTTAGTTAGTTGAAAATAAAGCCAGAAGAGGCAGAAATCCGACA
TGTTTTACCCGGTAATAAACGAGATAATTCTTCGGTACTCGCTTGGTATT
TCGAAATTCGGTTTGCCCATTCTCTGCTGCTCGAACCGCTGACCGCTAGG
GTGGAGACAGGTCGACCGCTGACCAACTACAAATTTGTTGAGTCACGTGA
TTTCAATGTTTTTATTTTGCAGACGCCATCTTTAATTTTAGCAAAACGAC
TTGAAAATTTTTTCCAGAGGCAAGCACAAAAAACAGGAGACGACCGAAGA
AAAACAGAGAAACTTAAACCAACCAAAAAATATTTACGACCACCGATCAA
CCTTGAGTTCTTCATCTTGGTACGAGGCATTATGAGGTGGGAGTATAAAG
AAGAACACGCCTTTGAAAGAAGAAGATCAGAGGGAGAGAAAATTAGAAGG
AAGTATCCAGATAGAGTTCCAGTAAGTTTTATTACATTTATTTTGCTGTC
TACCTAGTGTGCAGAGGCAGAGGGGACTGAACTCCCCTCATTTTTATTTC
ATGCCCCCTATATGTGTATCATCCTGTTTAAAAAATAATTCGAACCCAAG
CTATTTAGCTACAGCCAGTGTAGACCTAAAAAGCTCTAAAACAGCATCTA
ATAACATGAAAACCAGAATATGATTCTTCAATGGGAATCAAAACTATAAA
GTGCACTTACAAACATCAATTTGTCAGANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG
AAATGATCTATCACAGCTCAGTCTACCATTTTTAACGCGGTCCGAGGATT
GAGCCGAGAACGCTCCGCGAACTCCTGCGCGGGTGAAAAACTTCAATCTG
TCAATCATTTTCTCAAGCGAAGAGTANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGC
GGGACTTTGGCTTGAGTGCTTGAGTGCAGCATAGGGTACAAAGTCCAAAC
ATGCGTTTCCCATAATTTTTGTATGAAGAGTTAGGTCTATACTGACAGCA
TCAACAGTCCACCACCAGTCAATTCAAAACCAAAAGTATTGAAATTTGTA
TTAAACCAGACGTCCAAGCTCGATAGGATCGATCATCGGAGCGGCTCGAT
GACGGATCGATATGTGATCGATGGATTACTTAACGATCCGGATAGGAGAT
CAATGGAAGATTCGGCCATTAAAGGGACCCCCTCGCTTAAAAATGATAAC
AATACACTCACTTCATAATCATATGAAAAGCAACTTCCCAAAGTATTAGC
ACGCAAAACTCTTTCTTCGCTCCATAATTAGAAATTATAAATTTTGATGT
TCACTCAACTTTCAGAAATTTCAAATGGCTTCTTAAGGCCTTCGAATTTT
CTCGCGCTCTTGTCGCACCAAGTCGTCGACACAAAGTTCTTGAATAAATA
AGCATCTTGTGCTGAATTCACCTTTGAAAACAACAAAATTGTGTCCGTCT
GTCACTGTCTGTCACACATTTTCAGTTATAACTCAAATTTGGTTAAAGAA
AATAGCTTGAAATTTTCAAATCATATACTATGGAGTAATACTGTACTTTC
ACATAAAATTGACAAGAATTTAGAAAGCCTAATTCAAAACCCAGTGGATA
AAAGACAGGCATATCAGTTAGGGAAACCATCCAGGATCCTGCCATTCTAT
AAGCCAGCAAAAACTAAATAACACTTGTAAACTTAAGTTTCTTACCATTT
TCCATCGAAAACAACCAAAAATATTGCTACATCCCAAAGCCGGAGACCAA
AACAAATTATGGCGCCCTTTTGGATCTATTGTTAAGGCCATCTAAAATGG
TGGAAAGAGTGGCAGAAAGACAAAGGCGCTCGCTGCGTTGAGGGTGGTAA
CGCCAAAACGCCCAATATGATCTTCCAATAGAAGGCGAGTTAGTTGCCGC
GCGAGTTACGTCATGCACTCCACCGCAGCGCATAACAAAGCGTGTTTAAA
ATGAATATCATTAATTATAAGAATATTTTATGTGCTTACTTTCAGTAAAC
TTCGAGTGCTTCATTAAAGATGAAGAAGGTAAGAAGATAAGAAATGCGCT
GGATAATTTTCATTGTAGCAGTTTGGTCAATCATCGTTGAAAGTTTGAAA
AAGTTTTTCCGACGCAAAAGAAAATGTCAACCAATTAAAAGCACAGTGTG
CCTATACTTACTATGTTTGCTACATTGTCTAGGCTAAAAAAAGTGCAAAA
AGACACGAACGCCATTTTTTAATGAGTGACGTTATGATTTTTTTGATTGC
GGCCGCGTACAGGAACTCGCCAAATGTTCCTAGCTGCATATGCTTGACAT
GACCATAGTATAGATTTTTGCTAATATTTCAAAGACGAAACAAAGTATCA
AAAAATGACTTACTTAGTCCTGACTGATACCTTCTGCCACAGTACCAAAT
CCACAAAAACTCAAGCTCTAATACCTAACACATTTACTTCTATGGCAATT
TGATAAAATTTTGTCTTGTTTACAAACCCATGGTACAGATTTGGTGCAAT
TCACCCTCAAATATATTATTAACAGCACTGCTTCTGTTTACTAAAAGAGA
TTAAAATAATTGATGTTTATTGTAATGTTGTCGTTGGATAAGGAATTAAG
AGGTGTGTAATGGACTAAATTTATAACAATAATAATAATAATAATAATAA
TAATCAATAGCTATTTAAAAATCTGTAATTACCATCAAACTGGTTTACAC
AAGGGTAAACCACTCTTAAAAACTATTGGTCAAAGTAAGAAAAACGAATT
ATTTTGATTTCTACAGCTAATTTCAGACTTCTTTGAGTTTTAGAGTTTTA
CCAAATACCTACTAATTAATAAAGGAAATTATACTGTTCCATAAGATGCT
GACATAATAATGTTTTTGTGTTTTTTGCCTACAGGTAATCGTTGAAAAAT
CCCCAAAAGCAAAGATTGGCGATTTGGACAAAAAGAAGTACTTGGTACCA
TCTGATTTAACAGGTTTGAATTTTTGGACTGATATTTTCTTGTAATTTCA
GATGAAAGGTTTTTTTCAAAAGCCACAAAGTAAAAAGGAGGCTCGCAAAA
ATTTCTAATTGCAAAGGTACGCTTTTACTGCAAGTATTGTAGAGTAGGTT
GAAAACTTTTGTGCTATTAAAAGTCTTTCTATTTCTCTTTTCAGTCGGAC
AATTTTATTTTCTGATTCGCAAACGAATTCATCTAAGGGCCGAAGACGCT
CTCTTTTTCTTCGTAAACAACACCATCCCTCCAACGTCTGCAACAATGGG
TGCTTTATACCAAGAACATCACGAAGAAGACTTTTTTCTTTACGTTGCCT
ATAGTGATGAAAGTGTTTACGGTGGCTCTCCTTCATTGGTGTAAATAATT
TGTCTTTTTCATGCGTGGTTAACAAGTTTCTGGTCGAATATACAAGATTG
GCCTGCAATTAAATGTGGCTTGGTCAAAGTGAAGTTTTTCATTCTCAACT
ATTTATAGAAAAAATGTATTTAGATTGATATTTTTATTATCTGAACTTCT
TTGTTTTACAATAGAATTAATGAAAGTTTTTACTTCAAATTTCCATATTT
TTTTCTGCAATCTTTGGTTTTCTTTTTGTTTGGATTGAAAATTATTTGGA
GCTTTTTCTATGTACGAATGGCCAGGAATGGCTATTTCTGTTTTCAAGTT
GTTAGTTTTGTACCTATTTTTTGGGCCTGGGCTTCTTTGACATCACATTA
ACTCAATTAGTATGCTATGTAGTGCTATATTATTTAGTTTTAGATAATCA
AAACTTGTTTATCTTTAAGAATTTAAAGTATAGAGAATAGTAGATTTTGC
AGTTTTTTGTTCAATTGGGAAAGTTGTCAATAAGTTTTACTTTTAACTTT
TTTTTGTGCATTTTAATTTGGTTTGATTTTTTTATTTAAGTTTCATTTAT
ATATGCATTTCGAACACATCACGCGGCATTAGTGGCATCTGTTTTACAAT
TGCTCTGATAACGTACACCTGTACTTACTTGGACGTTTAAGGAACTTGTA
CTCATTTAAATTTGTCGGTTCGAATCTGTATATTCGCTTCAATTTTTATG
TTTTTGTGTTGTTGTGTTTAATTTAAAAGAAATAATCACCTTGTTTATTT
TTATTTTTGCATCATTATATTATTACGTTTTAAGTTTGTTTGTATTTATG
TAAACATTGAAAAGAAAAAATACTTTNGTTTCCAAATTTTTGTAACCCTT
AGAGAGACTTTGAAAGGTGAAAAACCCGACCCTTACCGTCCGCACATACC
CAGCACCTATTTTTGCCTAAGTACCCCCCCCCGGGGTAGTGCTATATTAT
TTAGTTTTAGATAATCAAAACTGGTTTATCTTTAAGAATTTAAAGTATAG
AGAATAGTAGATTTTGCAGTTTTTTGTTCAATTGGGAAAGTTGTCAATAA
GTTTTACTTTTAACTTTTTTTTGTGCATTTTAATTTGGTTTGATTTTTTT
ATTTAAGTTTCATTTATATATGCATTTCGAACACATCACGCGGCATTAGT
GGCATCTGTTTTACAATTGCTCTGATAACGTACACCTGTACTTACTTGGA
CGTTTAAGGAACTTGTACTCATTTAAATTTGTCGGTTCGAATCTGTATAT
TCGCTTCAATTTTTATGTTTTTGTGTTGTTGTGTTTAATTTAAAAGAAAT
AATCACCTTGTTTATTTTTATTTTTGCATCATTATATTATTACGTTTTAA
GTTTGTTTGTATTTATGTAAACATTGAAAAGAAAAAATACTTTCTAGATT
ATCAATAAAATATCTCGTTTTATATTAGTAGTTAAACAAATAGGAAAATA
TACATAAAAATTGTCATTATTTGTAAATTTGAAGCTACGTTATATAAAAA
GAAATGAATAAGCATTATAACTTTAGAATTTAAGTCGATGTTTTGCCTGA
TTTTTGCATAATTCTTTATAGATCAACATCATTAGCTTGAAAAAAAAAAC
ATTTGACTCGA

Coding sequence (CDS) from alignment at sc0000174:489414..496624-

>TCONS_00013894 ID=TCONS_00013894|Name=TCONS_00013894|organism=Clytia hemisphaerica|type=CDS|length=1863bp|location=Sequence derived from alignment at sc0000174:489414..496624- (Clytia hemisphaerica)
TCGGACAATTTTATTTTCTGATTCGCAAACGAATTCATCTAAGGGCCGAA
GACGCTCTCTTTTTCTTCGTAAACAACACCATCCCTCCAACGTCTGCAAC
AATGGGTGCTTTATACCAAGAACATCACGAAGAAGACTTTTTTCTTTACG
TTGCCTATAGTGATGAAAGTGTTTACGGTGGCTCTCCTTCATTGGTGTAA
GTAATCGTTGAAAAATCCCCAAAAGCAAAGATTGGCGATTTGGACAAAAA
GAAGTACTTGGTACCATCTGATTTAACAGCTCGAACCGCTGACCGCTAGG
GTGGAGACAGGTCGACCGCTGACCAACTACAAATTTGTTGAGTCACGTGA
TTTCAATGTTTTTATTTTGCAGACGCCATCTTTAATTTTAGCAAAACGAC
TTGAAAATTTTTTCCAGAGGCAAGCACAAAAAACAGGAGACGACCGAAGA
AAAACAGAGAAACTTAAACCAACCAAAAAATATTTACGACCACCGATCAA
CCTTGAGTTCTTCATCTTGGTACGAGGCATTATGAGGTGGGAGTATAAAG
AAGAACACGCCTTTGAAAGAAGAAGATCAGAGGGAGAGAAAATTAGAAGG
AAGTATCCAGATAGAGTTCCATCGGACAATTTTATTTTCTGATTCGCAAA
CGAATTCATCTAAGGGCCGAAGACGCTCTCTTTTTCTTCGTAAACAACAC
CATCCCTCCAACGTCTGCAACAATGGGTGCTTTATACCAAGAACATCACG
AAGAAGACTTTTTTCTTTACGTTGCCTATAGTGATGAAAGTGTTTACGGT
GGCTCTCCTTCATTGGTGTAAGTAATCGTTGAAAAATCCCCAAAAGCAAA
GATTGGCGATTTGGACAAAAAGAAGTACTTGGTACCATCTGATTTAACAG
CTCGAACCGCTGACCGCTAGGGTGGAGACAGGTCGACCGCTGACCAACTA
CAAATTTGTTGAGTCACGTGATTTCAATGTTTTTATTTTGCAGACGCCAT
CTTTAATTTTAGCAAAACGACTTGAAAATTTTTTCCAGAGGCAAGCACAA
AAAACAGGAGACGACCGAAGAAAAACAGAGAAACTTAAACCAACCAAAAA
ATATTTACGACCACCGATCAACCTTGAGTTCTTCATCTTGGTACGAGGCA
TTATGAGGTGGGAGTATAAAGAAGAACACGCCTTTGAAAGAAGAAGATCA
GAGGGAGAGAAAATTAGAAGGAAGTATCCAGATAGAGTTCCATCGGACAA
TTTTATTTTCTGATTCGCAAACGAATTCATCTAAGGGCCGAAGACGCTCT
CTTTTTCTTCGTAAACAACACCATCCCTCCAACGTCTGCAACAATGGGTG
CTTTATACCAAGAACATCACGAAGAAGACTTTTTTCTTTACGTTGCCTAT
AGTGATGAAAGTGTTTACGGTGGCTCTCCTTCATTGGTGTAAGTAATCGT
TGAAAAATCCCCAAAAGCAAAGATTGGCGATTTGGACAAAAAGAAGTACT
TGGTACCATCTGATTTAACAGCTCGAACCGCTGACCGCTAGGGTGGAGAC
AGGTCGACCGCTGACCAACTACAAATTTGTTGAGTCACGTGATTTCAATG
TTTTTATTTTGCAGACGCCATCTTTAATTTTAGCAAAACGACTTGAAAAT
TTTTTCCAGAGGCAAGCACAAAAAACAGGAGACGACCGAAGAAAAACAGA
GAAACTTAAACCAACCAAAAAATATTTACGACCACCGATCAACCTTGAGT
TCTTCATCTTGGTACGAGGCATTATGAGGTGGGAGTATAAAGAAGAACAC
GCCTTTGAAAGAAGAAGATCAGAGGGAGAGAAAATTAGAAGGAAGTATCC
AGATAGAGTTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007755XLOC_007755Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013894-proteinTCONS_00013894-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013894-exon-sc0000174-1575043694:496283..496624TCONS_00013894-exon-sc0000174-1575043694:496283..496624Clytia hemisphaericaexon
TCONS_00013894-exon-sc0000174-1575043694:491412..491490TCONS_00013894-exon-sc0000174-1575043694:491412..491490Clytia hemisphaericaexon
TCONS_00013894-exon-sc0000174-1575043694:489414..491230TCONS_00013894-exon-sc0000174-1575043694:489414..491230Clytia hemisphaericaexon
TCONS_00013894-exon-sc0000174-1510915933:496283..496624TCONS_00013894-exon-sc0000174-1510915933:496283..496624Clytia hemisphaericaexon
TCONS_00013894-exon-sc0000174-1510915933:491412..491490TCONS_00013894-exon-sc0000174-1510915933:491412..491490Clytia hemisphaericaexon
TCONS_00013894-exon-sc0000174-1510915933:489414..491230TCONS_00013894-exon-sc0000174-1510915933:489414..491230Clytia hemisphaericaexon
TCONS_00013894-exon-sc0000174-1491911889:496283..496624TCONS_00013894-exon-sc0000174-1491911889:496283..496624Clytia hemisphaericaexon
TCONS_00013894-exon-sc0000174-1491911889:491412..491490TCONS_00013894-exon-sc0000174-1491911889:491412..491490Clytia hemisphaericaexon
TCONS_00013894-exon-sc0000174-1491911889:489414..491230TCONS_00013894-exon-sc0000174-1491911889:489414..491230Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000174supercontigsc0000174:489414..496624 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
60.8637	60.4591	67.0609	70.9413	29.2575	22.3641	37.267	40.7536	52.2166	42.3175	39.8716	31.5507	42.8294	37.1173	24.8729	24.66	45.1863	54.17	39.4413	47.4486	51.4528	48.5019	23.767	32.0227	64.7873	57.713	16.3979	16.3336	13.7158	13.7488
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004241Atg8-like
IPR029071Ubiquitin-rel_dom
Blast
[Close]
BLAST of TCONS_00013894 vs. Swiss-Prot (Human)
Match: GBRAP (Gamma-aminobutyric acid receptor-associated protein OS=Homo sapiens GN=GABARAP PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 4.539e-68
Identity = 105/116 (90.52%), Postives = 112/116 (96.55%), Query Frame = 1 
Query:  253 MRWEYKEEHAFERRRSEGEKIRRKYPDRVPVIVEKSPKAKIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNTIPPTSATMGALYQEHHEEDFFLYVAYSDESVYG 600
            M++ YKEEH FE+RRSEGEKIR+KYPDRVPVIVEK+PKA+IGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNN IPPTSATMG LYQEHHEEDFFLY+AYSDESVYG
Sbjct:    1 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
The following BLAST results are available for this feature:
BLAST of TCONS_00013894 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GBRAP4.539e-6890.52Gamma-aminobutyric acid receptor-associated protei... [more]
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