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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013889 ID=TCONS_00013889|Name=TCONS_00013889|organism=Clytia hemisphaerica|type=transcript|length=6122bpRun BLAST on NCBI protein sequence of TCONS_00013889-protein >TCONS_00013889-protein ID=TCONS_00013889-protein|Name=TCONS_00013889-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1858bp SYIKAEVNKSSRSIQTATMSVEKSQQSSHLNYTLLEDEQSKREKAEALLRRun BLAST on NCBI transcript from alignment at sc0000174:460364..475338- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013889 ID=TCONS_00013889|Name=TCONS_00013889|organism=Clytia hemisphaerica|type=transcript|length=14975bp|location=Sequence derived from alignment at sc0000174:460364..475338- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000174:460364..475338- >TCONS_00013889 ID=TCONS_00013889|Name=TCONS_00013889|organism=Clytia hemisphaerica|type=CDS|length=145002bp|location=Sequence derived from alignment at sc0000174:460364..475338- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00013889 vs. Swiss-Prot (Human)
Match: CROCC (Rootletin OS=Homo sapiens GN=CROCC PE=1 SV=1) HSP 1 Score: 549.28 bits (1414), Expect = 3.386e-161 Identity = 521/1628 (32.00%), Postives = 907/1628 (55.71%), Query Frame = 1
Query: 385 EEMEILQNTLREMANTVLIDTDNTATILGMSEPSSAVRSPSKLDLSSMXXXXXXXXXXXEISFNSTSGSFGGRVKGXXXXXXXXXXXXXXXXXXXXXXXXXVADS-TVSMAQSALKKRQLQIQEFKNRYDVKMEEMRGMRKQLNETRNNVKSLEEEIERLKDDHDSSKSKLHGTDQERMKFKQQLETVGSEKQVVEKERQTLLKDKDDHQKQIEKLKTNVXXXXXXXXXXXXXXXNLIREKDRTSKELQRCQAQIRQHEEKQSNLREENAGLKEELSRAQLANDVVEQEKTHLTELYHKTEEQKEVLETELVRLRNDEVQLKDALVKLQSLNEALGQDKVDLNKIIRQNEVERDHFINEKQELEMEKSAIKEELLRTERDRIEIEAERTGLDQSLQETESHKEKLKEQAQELTRVKNELSEALNASGREKDSISGEMHQVKKENERHSNNLNRLSKEKEEMTRDNAHLTVQLKASERDNRTLSETNASLKADKDSLESSLFEMQQLVTKLETRKEQLESENHELNLNKEALTVDFNRLKKE---------KDIELM--KVIKXXXXXXXXXXXXKREHGVLVNRIKQEHEDERVGIIKEKDKTALSKEQELSTALSTLQEEMDKTQAKAEKERNQLFNEVASVQKERDDCLXXXXXXXXXXXXXXXXXXXXLVDMXXXXXXXXXXLSIALEKLKKDSSSKIAQDKAVLNESMQEMRTMKDEYEDILTEAKRKIASCEENIADLSRNKESLIGENSDLKHQLKKLEETHGDLSRDHKQLKRQTNETVEELDSAQKEVGEFKRLLKDVELEKEIARNSANDLKELVKNAEAEKAGLKRNLDEANKMMAQLEESNLSQMREADELRSNIRELETARQESRREIQQLHNQVRTLDNDLLKAKKEMNTLKDQLAKNERLLDEGRQDVLNTKQKLTDSESTRETAKREVQSLTSKLQDTNEELRMREKELNATSEDAKRNDSKAIXXXXXXXXXXDNANQEKSDLKLRLSSAEGKNAGLENQLNKIENGKNQIEFKLNNLYSTLRRTLGIRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRHKMTSSMQENDSESETQLSTTSHPDSSGESSKFDMTSEIDPETIRSGLRDFAQKLKDLERERDEAHAKIGVMQRQIATLEKDRNECEERVQALQKNLEDTEEGKRGADGRLSSAQTALMLQEETIRRLERERKVLNDKLLTLESSIAQAEADKRVFREKLGKSQKAESRSEKERDAMRQQIDNAESRVTRMELKKKSLEGDLDRVRQQLADSETEKQGMRHRIEQLQRTQQDLEQKVTTTQITIDRLNTSLTKTSDQEKMFKEKVNELSINLSETNSTTQSLHEKLQQTQRALLNTEQENQALQEKIETLKSKQYESKRNLESCSETISALKSNVSDVEAKRLELENELRLSAQNIQKKSNSESELTDRITRAQEEKXXXXXXXXXXXXXXXXTEQEKREIERNVXXXXXXXXXXXXNIERVERDKQFIEDELNRSRTNKTEIERTIQSNEQNANELRLQVNQLQQILDEKEQNQSQKLMEI-TSRHRDELEREAERNKNAQVHLERTHAARERAHKQRTRGLEEQVNTLKDQLSKEMQQKQSFINRTS 5229
E+ E LQ TLR++A VL D+++ + G E + ++++GS G + G R + P R + R SP R SPA +DS T+++ SAL KRQLQ+Q+ + RY+ + + +RKQL+++ + ++LEE+++RL+D D + +E + + E + EK + Q + ++ +++ EKL+ E++R+ + E+E+++ +++ R +EL+R Q+ Q E K+S L +E ++E LSRA L D+++ EK + E K E + LE + +LR +E L+D+L KL +LNE+L QDK+DLN+++ Q E E+ +++ E E + +EE R E R+E E R GL+ SL+ E +E L++Q L +++L E L R+ E+ Q ++E +R L R ++EKE + +++A L VQL A+ER+ RTLSE L+ +K++LE SLFE+Q+ + +LE R+EQLE+E L L KE LT + L+++ D ELM K+++ +RE + + HE++ + +EK+ E E + S LQ E ++ A+ E E+ +L E+A++Q+ERD+ L+ AE EKQ+ + E EK L + + + +S+ +E+ K+D+ S+ QD++ +N E+R ++ + E+ +++ +E DL + ++S + E +L+ QL+ LE+ L R+ + +R+ E+ E + ++E GE +R L + E+E R S +L+ VK AE+E+ LK ++ + +A LEE+ + +EA ELR+ ++E+E +R E+RRE+Q+L Q++ LD++ + +E+ L+ +LA ER E R++ L +Q+L E++ E ++E+Q KLQ+ E R RE+ L + E+A+ + + ++ + LE L+ A E ++L LRLS+AEG+ GLE +L ++E + E +L L S LRR LG+ +P R E + T + S + + ++DPE +R LR+F Q+L+ +RERDE + + RQ+A +E +R+ R + LQK + ++EE +R DGRLS Q L LQEE++RR ERER+ D++ TLE S+ E++ R +EK+ K + E++ E ++ +++ +D +ESR ++EL+++SLEG+L R R L+D E + Q ++ R++ LQR D E K T Q+T++RLN +L K + E ++KV L+ L++++++ S +K Q+AL E + Q LQE+++ + E+++ S E + L+ V+D+E +R+E E +L+ + ++++ E+ + + + Q+E+R LQ+RL QR L+Q E EKRE+ER+ L+ +K++ L+ +++VER+K ++ R K ++RT+ E E + Q+ QL+ + EQ+ S +E+ + + EL++E ER ++AQ ERT ARERAH+QR RGLEEQV+TLK QL +E+++ + + S
Sbjct: 444 EDGEGLQQTLRDLAQAVLSDSESGVQLSG-----------------------------SERTADASNGSLRG-LSGQRTPSPPRRSSPGRGRSPRRGPSPACSDSSTLALIHSALHKRQLQVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSREKSNLAHSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQLEGKRSVLAKELVEVREALSRATLQRDMLQAEKAEVAEALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSALNESLAQDKLDLNRLVAQLEEEKSALQGRQRQAEQEATVAREEQERLEELRLEQEVARQGLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQLAQLSRQLSGREQELEQARREAQRQVEALERAAREKEALAKEHAGLAVQLVAAEREGRTLSEEATRLRLEKEALEGSLFEVQRQLAQLEARREQLEAEGQALLLAKETLTGELAGLRQQIIATQEKASLDKELMAQKLVQ-----------AEREAQASLREQRAAHEEDLQRLQREKEAAWRELEAERAQLQSQLQREQEELLARLEAEKEELSEEIAALQQERDEGLLLAESEKQQALSLKESEKTALSEKLMGTRHSLATISLEMERQKRDAQSRQEQDRSTVNALTSELRDLRAQREEAAAAHAQEVRRLQEQARDLGKQRDSCLREAEELRTQLRLLEDARDGLRRELLEAQRKLRESQEGREVQRQEAGELRRSLGEGAKEREALRRSNEELRSAVKKAESERISLKLANEDKEQKLALLEEARTAVGKEAGELRTGLQEVERSRLEARRELQELRRQMKMLDSENTRLGRELAELQGRLALGERAEKESRRETLGLRQRLLKGEASLEVMRQELQVAQRKLQEQEGEFRTRERRLLGSLEEARGTEKQQLDHARGLELKLEAARAEAAELGLRLSAAEGRAQGLEAELARVEVQRRAAEAQLGGLRSALRRGLGL------------------GRAPSPAPRPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASPDLDPEAVRGALREFLQELRSAQRERDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVAESEEARRSVDGRLSGVQAELALQEESVRRSERERRATLDQVATLERSLQATESELRASQEKISKMKANETKLEGDKRRLKEVLDASESRTVKLELQRRSLEGELQRSRLGLSDREAQAQALQDRVDSLQRQVADSEVKAGTLQLTVERLNGALAKVEESEGALRDKVRGLTEALAQSSASLNSTRDKNLHLQKALTACEHDRQVLQERLDAARQALSEARKQSSSLGEQVQTLRGEVADLELQRVEAEGQLQQLREVLRQRQEGEAAALNTVQKLQDERRLLQERLGSLQRALAQLEAEKREVERSALRLEKDRVALRRTLDKVEREKLRSHEDTVRLSAEKGRLDRTLTGAELELAEAQRQIQQLEAQVVVLEQSHSPAQLEVDAQQQQLELQQEVERLRSAQAQTERTLEARERAHRQRVRGLEEQVSTLKGQLQQELRRSSAPFSPPS 2012 The following BLAST results are available for this feature:
BLAST of TCONS_00013889 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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