|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013880 ID=TCONS_00013880|Name=TCONS_00013880|organism=Clytia hemisphaerica|type=transcript|length=1414bp
CGCATGTGTTTGATGTTTGAGTCTCATCCAGTTTACCCTTATACCTGGCT
GAATGCTAAGCTAAGTGATAGTATCGGTATGATTTATAATAGTATTTGTC
TCCTGTATTAACCAATCttaacttattttctttttttacagactagaaaa
gtagaaaaaaaagaaactatTATATAAAATAGAGGCAGCAGATGGCAAAA
ACGAAAGCTAACCAGCTAAGACATGAACCGAAGTCAGCATCTACCCCTGC
ACCATCCAAGAAGTCAAGtggcaaaaagaaaatgaaaagccCTTCAAGAA
CACCTGCGAGTCCAGATAAATCGAACAGATCAAATTCAAGATTAAATGAA
AGCGGTATCAAAAAGAGGAAATGGAAAGCTGGAACAAAGGCGTTACGTGA
AATCAGATTTTACCAAAGAACCGACCACAAATTGATTCCTAAATTATCGT
TTTGTCGATTAGTAAAAGAACTTTTATCTAATGCTGTCGGAGGTGGGTCT
GAGCAATTGAGAATTCAAACATACGCTTTGGATGCTTTACAAGAAGCTGC
TGAAAGTTTTATGGTACGTTTTTTTGAAGAATCAAACCTCTGCGCTATTC
ATGCTAAACGAGTAACACTTATGCCGAAGGATATGCAGTTATTGAAAGCG
TTGAAATATGACTGTGAGTTATAATTTTGTCCGATTTCATCATTATGCAA
ATCTTACTATACATTGAAAGCTTTTGATTTGACACCTTGGCTTCTTCGAT
AgcttaaaaatgacattcttctgTATAACGTGAGATCTAAATCTCTTTTG
CCCATCTAATGATGATTTCAAATCAACTTCCTAACGCGATTCTACTTTTC
TAACTGGGATAATGTCTAGCTGCTATAATACTTTGCTACTCATGAATGAA
CCCACATTAGTCCATCATCTGAACTAGAAAACTTGAATTTTAAGGATTTA
TCTAGCGGCCGAATCCGCAAGAAACATCGGAAAATCATTTTCAAGTTGTG
CAGTACTTGACTTGTATTGTAAATATTAGATTCTAGAACTGCTTGGGTTT
CCAAGGCAAGGGCGTCAATTGGAATTTACAATTCTGTctaattttttaat
tcaaatttcaaacaatttgaaATTCGTCTGGAATTACCAGTTTTTCGAAT
ACTACGAGTATTACATCACTAATGATTTGATTAATTTGATTTACTCCCGA
CACTCTGGAAAGTTCATTGGGTTTTTATGTAGTTTTAGGAATGATATTCg
acaagaaatttaaaaacGTTTATTTTTAATAAGTTTTCATTAGTAGTATA
CCTTGTAAatagtattttaaaggtttttaaaattttaatgaacttttttt
tccttttagtcTTTTAAACCAAACTGAAAATATAAACTTTACTACCGGAA
Ggtcttttaaaaat Run BLAST on NCBI transcript from alignment at sc0000174:254940..257082- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013880 ID=TCONS_00013880|Name=TCONS_00013880|organism=Clytia hemisphaerica|type=transcript|length=2143bp|location=Sequence derived from alignment at sc0000174:254940..257082- (Clytia hemisphaerica)
CGCATGTGTTTGATGTTTGAGTCTCATCCAGTTTACCCTTATACCTGGCT
GAATGCTAAGCTAAGTGATAGTATCGGTATGATTTATAATAGTATTTGTC
TCCTGTATTAACCAATCTTAACTTATTTTCTTTTTTTACAGACTAGAAAA
GTAGAAAAAAAAGAAACTATTATATAAAATAGAGGCAGCAGATGGCAAAA
ACGAAAGCTAACCAGCTAAGACATGAACCGAAGTCAGCATCTACCCCTGC
ACCATCCAAGAAGTCAAGTGGCAAAAAGAAAATGAAAAGCCCTTCAAGAA
CACCTGCGAGTCCAGATAAATCGAACAGATCAAATTCAAGATTAAATGAA
AGCGGTATCAAAAAGAGGTATTTCAACTTTGGTTTTTTAAACGATTAAAA
TTTGGTAGAAATTTGAAATCTTCATTGAAAAAAAAAACTCCCCCGCCCTT
TGTTTTGATCAAAACCAGCCCTCCCCCCGACAGTTTACATGAATGCGTGA
ATGGGCTTTTTTTACGTGCGCGAATGCCTGAAAATTTCACAAAATCTGCG
TGAATGCATGAATTGGAACTTTGCGTGATGTGCGAACCTATATTATTTTA
ATTCCCCTACCCCTTAGATTTCCAAAAATTTATAACAAGTGCTTTGACTA
AAAAAGTCAAGCGACCTTAAAAAATCGAATAAATTCCCCCGTACTATGAA
CAAAAGTTTGGAAAAATAAATTGCGTGAATTAAAGGTCAGCTTGGGGGGG
GGGTCCTCATCAGAGCTCTCGTTTATCAATTCTCATCCTTTTTCATAAAA
ATAAATATATTTGCTAATCTGAAGCTAAGGCTTTACATACATACGCCTAA
AAAAACTATTCAATGTAGCCTTTGCTTAAACCTTCAAAAAGCTACCCCTT
CGATTTTAGAACAGATTTTCAAAGAAAGCTTCTATAAATTCAGCAGCTCT
AAATATGTTTTATCTAGATTCTGAATTTAAGTCTAAATAAGTCTTGAGTA
GTACGATAAGGCCCCGTTTATAAGGCACCCAAGATCAAAAGCACCCTGAG
ATCGTGAGTTTTATTGCTAATTTATCTTTTCTTTTGTGTATTTCAGGAAA
TGGAAAGCTGGAACAAAGGCGTTACGTGAAATCAGATTTTACCAAAGAAC
CGACCACAAATTGATTCCTAAATTATCGTTTTGTCGATTAGTAAAAGAAC
TTTTATCTAATGCTGTCGGAGGTGGGTCTGAGCAATTGAGAATTCAAACA
TACGCTTTGGATGCTTTACAAGAAGCTGCTGAAAGTTTTATGGTACGTTT
TTTTGAAGAATCAAACCTCTGCGCTATTCATGCTAAACGAGTAACACTTA
TGCCGAAGGATATGCAGTTATTGAAAGCGTTGAAATATGACTGTGAGTTA
TAATTTTGTCCGATTTCATCATTATGCAAATCTTACTATACATTGAAAGC
TTTTGATTTGACACCTTGGCTTCTTCGATAGCTTAAAAATGACATTCTTC
TGTATAACGTGAGATCTAAATCTCTTTTGCCCATCTAATGATGATTTCAA
ATCAACTTCCTAACGCGATTCTACTTTTCTAACTGGGATAATGTCTAGCT
GCTATAATACTTTGCTACTCATGAATGAACCCACATTAGTCCATCATCTG
AACTAGAAAACTTGAATTTTAAGGATTTATCTAGCGGCCGAATCCGCAAG
AAACATCGGAAAATCATTTTCAAGTTGTGCAGTACTTGACTTGTATTGTA
AATATTAGATTCTAGAACTGCTTGGGTTTCCAAGGCAAGGGCGTCAATTG
GAATTTACAATTCTGTCTAATTTTTTAATTCAAATTTCAAACAATTTGAA
ATTCGTCTGGAATTACCAGTTTTTCGAATACTACGAGTATTACATCACTA
ATGATTTGATTAATTTGATTTACTCCCGACACTCTGGAAAGTTCATTGGG
TTTTTATGTAGTTTTAGGAATGATATTCGACAAGAAATTTAAAAACGTTT
ATTTTTAATAAGTTTTCATTAGTAGTATACCTTGTAAATAGTATTTTAAA
GGTTTTTAAAATTTTAATGAACTTTTTTTTCCTTTTAGTCTTTTAAACCA
AACTGAAAATATAAACTTTACTACCGGAAGGTCTTTTAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013880-exon-sc0000174-1575043694:256716..257082 | TCONS_00013880-exon-sc0000174-1575043694:256716..257082 | Clytia hemisphaerica | exon |
| TCONS_00013880-exon-sc0000174-1575043694:254940..255986 | TCONS_00013880-exon-sc0000174-1575043694:254940..255986 | Clytia hemisphaerica | exon |
| TCONS_00013880-exon-sc0000174-1510915933:256716..257082 | TCONS_00013880-exon-sc0000174-1510915933:256716..257082 | Clytia hemisphaerica | exon |
| TCONS_00013880-exon-sc0000174-1510915933:254940..255986 | TCONS_00013880-exon-sc0000174-1510915933:254940..255986 | Clytia hemisphaerica | exon |
| TCONS_00013880-exon-sc0000174-1491911889:256716..257082 | TCONS_00013880-exon-sc0000174-1491911889:256716..257082 | Clytia hemisphaerica | exon |
| TCONS_00013880-exon-sc0000174-1491911889:254940..255986 | TCONS_00013880-exon-sc0000174-1491911889:254940..255986 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000174 | supercontig | sc0000174:254940..257082 - |
Blast
BLAST of TCONS_00013880 vs. Swiss-Prot (Human)
Match: H33 (Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2) HSP 1 Score: 102.834 bits (255), Expect = 1.083e-25 Identity = 52/105 (49.52%), Postives = 75/105 (71.43%), Query Frame = 3
Query: 345 NESGIKK-RKWKAGTKALREIRFYQRTDHKLIPKLSFCRLVKELLSNAVGGGSEQLRIQTYALDALQEAAESFMVRFFEESNLCAIHAKRVTLMPKDMQLLKALK 656
+ G+KK +++ GT ALREIR YQ++ LI KL F RLV+E+ + LR Q+ A+ ALQEA+E+++V FE++NLCAIHAKRVT+MPKD+QL + ++
Sbjct: 32 STGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF----KTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
The following BLAST results are available for this feature:
|
