TCONS_00013848 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013848
Unique NameTCONS_00013848
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1502

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013848 ID=TCONS_00013848|Name=TCONS_00013848|organism=Clytia hemisphaerica|type=transcript|length=1502bp
ATAATATCTGAACATTATTTGTTTAATAAACTTTATGATCTATGCCGCAT
TGACCCCCCTCTTTCTTTTACTTTAGACCCACTGTCAATTCAGGCTTTAA
AACGGGGTTGCAAATTTGATATTTCTGTCATTAATACAAAGCAAACTGTC
CTGGACTGCACGCTTTCTTACGAATTATAAATTTCGTCGTGTTTGCGTTA
GAGTCTGGTTGACTTTTTGTTGACAACGCGAGAATTTTTTTGACAGACGG
TTGAATCGGAAACAGAACGAAGATGCAGAATCGAACCTTACTTGCTTTAG
CCCTGGTATTGGCTGGCATAATTGCTAGTgaagCTTGTATGCCTGGTATA
TATGACCATGGACATTGCAATTACTACGTCTCTAAGAACAAAGGAGCTTA
CTGTAAACACAGCTGGATGAAAATGTTTTGCCAATACGCTTGTGGTTACT
GCAAAGAAGGTGCACCATGTGAGGATGCTGGTCAAAAATGTGAAATTCTT
GCACAACTTGGATTTTGTGATTATTATCACACTCACCAAGAGTACATGAA
ACGTGCATGTCGAAAGTCTTGTAATTTCTGTGGAAATGAAAACCCTGGTC
CAAAAGAATAAAATTATCAACTGTGAAGAGTTTTTGAAGCGAGACCTGAG
ATTTAAGCAATACGAAAGGCTATTGGAAACAGATTTATAcacattttggt
catttttgacATTTCTTCCTTCTCCACTGGCTTTTGATTtgcttgatatt
ttgaaaatctatgacagaaaatcaatttttttatccgTTTCAAGCTCAAT
GACTCTTACCGTGTTTTACTCTACCTACCACTTACATGTaatgtaaaaat
tgtaaatagcTCACCAGCTTTTATATATTCACTTAGTATAATATTTTAGG
AATATTTTGGAAAGCAAGTATCAAAACGAATCGGGAACGAATCACTCAAT
CCTTTTCTAATTTAACAATCTTGGATTGCTTTTTGACGCTCTCACTTTAA
TAAAACTTAGAAATAAATCAAGCCCTGAAATAATACAAAGccgtaaaaac
cttgaaaaatacCTTAGAAAAAGTTAGGATATTTTTCCACtggatatttt
gatatttttgatataGTTTTTAGGTCACttactctttttacaaagcattg
atgactttttgtaagttgtgttttcaacgacgcgaataaaaatatcgact
atgacgctcatccaagatcttggatggtcgtcatggttacttttgtcttc
gctgattgcgcgatgaatagaatcttgattcgtcggcacagcgtaaatat
atgattttgagctgtgttTTTCACGGTATTAATTGACATACCATTAATAT
AGGAAAAACAAGGCTAAAAGGTATTCTTTATTTGATACTTTAGATGAGGT
TTGGGAGTTTCCATAAACAGTAGTTGATAATTGATTTTCATTCCTTAATT
AACAAAAGGTGCCTTGGTAAATAtttaagaaatcaggtgttttagagtcc
gc
Run BLAST on NCBI

transcript from alignment at sc0000174:384195..388617+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013848 ID=TCONS_00013848|Name=TCONS_00013848|organism=Clytia hemisphaerica|type=transcript|length=4423bp|location=Sequence derived from alignment at sc0000174:384195..388617+ (Clytia hemisphaerica)
ATAATATCTGAACATTATTTGTTTAATAAACTTTATGATCTATGCCGCAT
TGACCCCCCTCTTTCTTTTACTTTAGACCCACTGTCAATTCAGGCTTTAA
AACGGGGTTGCAAATTTGATATTTCTGTCATTAATACAAAGCAAACTGTC
CTGGACTGCACGCTTTCTTACGAATTATAAATTTCGTCGTGTTTGCGTTA
GAGTCTGGTTGACTTTTTGTTGACAACGCGAGAATTTTTTTGACAGACGG
TTGAATCGGAAACAGAACGAAGATGCAGAATCGAACCTTACTTGCTTTAG
CCCTGGTATTGGCTGGCATAATTGCTAGTgaaggtatttttttaaatttt
tgttataCTACGAAACGGAAAACAAATCCTCAACAAATTCATCGCTAGCG
TTTtcgttaacgatttttgttcatgcgtttttttaattgagctatttctt
ttctttttattttgggGTTTGACCAAAAAAAGTATGGCGTCTAGGCTAAA
TTCTCTCGTCAAGATGAGAGCCCCTGTTAAGAAATGCTACCCAGATACCA
TAAGTGATATATTCGTCTATATACACATGGCCTCTGTTAGAAAAGCCTCG
GTCACCTTTAGTGTCACGGGCTGCATGCACTTCCTTTGATATGTTTtaat
ataggggatgcgtatcgtgtataaatTTCCGATTCGagagttacccccgt
ctttgtatTCTGAGTTTCAGAAACTTGACCAAGTAAGTTTTATATGAAAG
ATCTTTAAATTTCAATAGATTCGAATTAAAAACTTGAATGGTTAGAGGAT
ATTACAATCATTTGATTTCTgaaacttttaaagaaaattgaaacaggtta
TCCGGAATCACCCctacatcaaaatcaatttcgggGATGTGCGTAGCCTA
AGAATGTGTTCTAAAAATTTGGTTTGCGTAAGATGTTTGAGGTCAGGACA
CTGGCGCTTCGTTGAACTCTAATAAAATTAAACAGCTCTGCTAGTGGCAC
TTATTAAAAAGTGTAACAAATGTTTATTTGTATTTAATTCCAGCTTGTAT
GCCTGGTATATATGACCATGGACATTGCAATTACTACGTCTCTAAGAACA
AAGGAGCTTACTGTAAACACAGCTGGATGAAAATGTTTTGCCAATACGCT
TGTGGTTACTGCAAAGAAGGTAAAGAGGCTGTTGACTTAACCCTAAAAGG
TACCGTAAAAATACATTTGTCGCATGCCTGAATTTTTGCATGATTTGCAT
ACAGATCTGATGTATTTATGCATGCCTTAGGCTATTTAATATTGGCATTT
TATTGGTCATTTTCTTTATATACAtcccggggggtactacccttgtcgac
cgacgggggtgctccgctgaggttcgaaaaatggacNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNAAAAAAACTTTCAGCCCCTGTTATCTTTTATCAAATGTTTGTCATTGT
GAATTGGGAAAGAAGAAGTTCCTGGAACTCAAGGCTAATTTGACACTTTA
AGGTTTTTAATGGGGAATTTAAGAGCCTCTCTAACTCGATTGCCTCCTAa
gctcgaacaaatttgctcGTCCCTACAGTTAATCCCTTAAAACCCTTTCC
CcatttctcaaaatttccatGATTCGAACAAGTATGTATTTCACATCCGT
GTTTGATTAATGGAAAATCTACTGTACCTATTTCTATTGGGATAGGCACT
GCTTGAAACTTAACATATAACACAGTCAATATTAGACATTCTAATCCTGA
ATTTCTCTTATGGAACCAAGATTTCCACATTACAAAGGGAAACTGGTGTC
TGTTCTTAACCcaatcacacccctgtctcgcagcacTGGGAACTTTTATC
CCATTCTTATCGCATtctattacacccctgtctcacaaccccgttggaac
ttttttcctcagaagggacaaaaattcctattgaaataccaatggggata
gaaaatctattgttccgaggttaaaaaacccagtgaatacattgaatttc
gaatgtggatgaaatcaaagtcaatttcccgaTGGGGATTGTAGGGTGTT
TTTCTCAccagagatgaaatttttgccaaattttcagGTGAGGTTGGAGA
CGCCAGTGGGTCTGAGACACAGAGGTATCCAATCTTAAGGTCAAATAAAC
ATGATGCTAAACGAACCACATTTTTTCTAGGTGCACCATGTGAGGATGCT
GGTCAAAAATGTGAAATTCTTGCACAACTTGGATTTTGTGATTATTATCA
CACTCACCAAGAGTACATGAAACGTGCATGTCGAAAGTCTTGTAATTTCT
GTGGAAATGAAAACCCTGGTCCAAAAGAATAAAATTATCAACTGTGAAGA
GTTTTTGAAGCGAGACCTGAGATTTAAGCAATACGAAAGGCTATTGGAAA
CAGATTTATAcacattttggtcatttttgacATTTCTTCCTTCTCCACTG
GCTTTTGATTtgcttgatattttgaaaatctatgacagaaaatcaatttt
tttatccgTTTCAAGCTCAATGACTCTTACCGTGTTTTACTCTACCTACC
ACTTACATGTaatgtaaaaattgtaaatagcTCACCAGCTTTTATATATT
CACTTAGTATAATATTTTAGGAATATTTTGGAAAGCAAGTATCAAAACGA
ATCGGGAACGAATCACTCAATCCTTTTCTAATTTAACAATCTTGGATTGC
TTTTTGACGCTCTCACTTTAATAAAACTTAGAAATAAATCAAGCCCTGAA
ATAATACAAAGccgtaaaaaccttgaaaaatacCTTAGAAAAAGTTAGGA
TATTTTTCCACtggatattttgatatttttgatataGTTTTTAGGTCACt
tactctttttacaaagcattgatgactttttgtaagttgtgttttcaacg
acgcgaataaaaatatcgactatgacgctcatccaagatcttggatggtc
gtcatggttacttttgtcttcgctgattgcgcgatgaatagaatcttgat
tcgtcggcacagcgtaaatatatgattttgagctgtgttTTTCACGGTAT
TAATTGACATACCATTAATATAGGAAAAACAAGGCTAAAAGGTATTCTTT
ATTTGATACTTTAGATGAGGTTTGGGAGTTTCCATAAACAGTAGTTGATA
ATTGATTTTCATTCCTTAATTAACAAAAGGTGCCTTGGTAAATAtttaag
aaatcaggtgttttagagtccgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007737XLOC_007737Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013848-exon-sc0000174-1491911889:384195..384527TCONS_00013848-exon-sc0000174-1491911889:384195..384527Clytia hemisphaericaexon
TCONS_00013848-exon-sc0000174-1510915933:384195..384527TCONS_00013848-exon-sc0000174-1510915933:384195..384527Clytia hemisphaericaexon
TCONS_00013848-exon-sc0000174-1575043694:384195..384527TCONS_00013848-exon-sc0000174-1575043694:384195..384527Clytia hemisphaericaexon
TCONS_00013848-exon-sc0000174-1491911889:385238..385363TCONS_00013848-exon-sc0000174-1491911889:385238..385363Clytia hemisphaericaexon
TCONS_00013848-exon-sc0000174-1510915933:385238..385363TCONS_00013848-exon-sc0000174-1510915933:385238..385363Clytia hemisphaericaexon
TCONS_00013848-exon-sc0000174-1575043694:385238..385363TCONS_00013848-exon-sc0000174-1575043694:385238..385363Clytia hemisphaericaexon
TCONS_00013848-exon-sc0000174-1491911889:387575..388617TCONS_00013848-exon-sc0000174-1491911889:387575..388617Clytia hemisphaericaexon
TCONS_00013848-exon-sc0000174-1510915933:387575..388617TCONS_00013848-exon-sc0000174-1510915933:387575..388617Clytia hemisphaericaexon
TCONS_00013848-exon-sc0000174-1575043694:387575..388617TCONS_00013848-exon-sc0000174-1575043694:387575..388617Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000174supercontigsc0000174:384195..388617 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.994746	1.11897	1.38292	1.52258	3.24505	2.87356	4.13772	2.37334	2.76334	7.08448	3.35251	3.94126	11.6529	12.0254	4.70319	3.00153	22.6912	28.367	15.076	8.43759	34.3273	34.3385	11.2196	10.4539	11.2904	20.1743	4.46823	2.83985	2.09258	2.40075
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013848 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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