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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013847 ID=TCONS_00013847|Name=TCONS_00013847|organism=Clytia hemisphaerica|type=transcript|length=1532bp
ATAATATCTGAACATTATTTGTTTAATAAACTTTATGATCTATGCCGCAT
TGACCCCCCTCTTTCTTTTACTTTAGACCCACTGTCAATTCAGGCTTTAA
AACGGGGTTGCAAATTTGATATTTCTGTCATTAATACAAAGCAAACTGTC
CTGGACTGCACGCTTTCTTACGAATTATAAATTTCGTCGTGTTTGCGTTA
GAGTCTGGTTGACTTTTTGTTGACAACGCGAGAATTTTTTTGACAGACGG
TTGAATCGGAAACAGAACGAAGATGCAGAATCGAACCTTACTTGCTTTAG
CCCTGGTATTGGCTGGCATAATTGCTAGTgaagCTTGTATGCCTGGTATA
TATGACCATGGACATTGCAATTACTACGTCTCTAAGAACAAAGGAGCTTA
CTGTAAACACAGCTGGATGAAAATGTTTTGCCAATACGCTTGTGGTTACT
GCAAAGAAGGTAAAGAGGCTGTTGACTTAACCCTAAAAGGTGCACCATGT
GAGGATGCTGGTCAAAAATGTGAAATTCTTGCACAACTTGGATTTTGTGA
TTATTATCACACTCACCAAGAGTACATGAAACGTGCATGTCGAAAGTCTT
GTAATTTCTGTGGAAATGAAAACCCTGGTCCAAAAGAATAAAATTATCAA
CTGTGAAGAGTTTTTGAAGCGAGACCTGAGATTTAAGCAATACGAAAGGC
TATTGGAAACAGATTTATAcacattttggtcatttttgacATTTCTTCCT
TCTCCACTGGCTTTTGATTtgcttgatattttgaaaatctatgacagaaa
atcaatttttttatccgTTTCAAGCTCAATGACTCTTACCGTGTTTTACT
CTACCTACCACTTACATGTaatgtaaaaattgtaaatagcTCACCAGCTT
TTATATATTCACTTAGTATAATATTTTAGGAATATTTTGGAAAGCAAGTA
TCAAAACGAATCGGGAACGAATCACTCAATCCTTTTCTAATTTAACAATC
TTGGATTGCTTTTTGACGCTCTCACTTTAATAAAACTTAGAAATAAATCA
AGCCCTGAAATAATACAAAGccgtaaaaaccttgaaaaatacCTTAGAAA
AAGTTAGGATATTTTTCCACtggatattttgatatttttgatataGTTTT
TAGGTCACttactctttttacaaagcattgatgactttttgtaagttgtg
ttttcaacgacgcgaataaaaatatcgactatgacgctcatccaagatct
tggatggtcgtcatggttacttttgtcttcgctgattgcgcgatgaatag
aatcttgattcgtcggcacagcgtaaatatatgattttgagctgtgttTT
TCACGGTATTAATTGACATACCATTAATATAGGAAAAACAAGGCTAAAAG
GTATTCTTTATTTGATACTTTAGATGAGGTTTGGGAGTTTCCATAAACAG
TAGTTGATAATTGATTTTCATTCCTTAATTAACAAAAGGTGCCTTGGTAA
ATAtttaagaaatcaggtgttttagagtccgc Run BLAST on NCBI protein sequence of TCONS_00013847-protein >TCONS_00013847-protein ID=TCONS_00013847-protein|Name=TCONS_00013847-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
MQNRTLLALALVLAGIIASEACMPGIYDHGHCNYYVSKNKGAYCKHSWMK
MFCQYACGYCKEGKEAVDLTLKGAPCEDAGQKCEILAQLGFCDYYHTHQE
YMKRACRKSCNFCGNENPGPKE Run BLAST on NCBI transcript from alignment at sc0000174:384195..388617+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013847 ID=TCONS_00013847|Name=TCONS_00013847|organism=Clytia hemisphaerica|type=transcript|length=4423bp|location=Sequence derived from alignment at sc0000174:384195..388617+ (Clytia hemisphaerica)
ATAATATCTGAACATTATTTGTTTAATAAACTTTATGATCTATGCCGCAT
TGACCCCCCTCTTTCTTTTACTTTAGACCCACTGTCAATTCAGGCTTTAA
AACGGGGTTGCAAATTTGATATTTCTGTCATTAATACAAAGCAAACTGTC
CTGGACTGCACGCTTTCTTACGAATTATAAATTTCGTCGTGTTTGCGTTA
GAGTCTGGTTGACTTTTTGTTGACAACGCGAGAATTTTTTTGACAGACGG
TTGAATCGGAAACAGAACGAAGATGCAGAATCGAACCTTACTTGCTTTAG
CCCTGGTATTGGCTGGCATAATTGCTAGTgaaggtatttttttaaatttt
tgttataCTACGAAACGGAAAACAAATCCTCAACAAATTCATCGCTAGCG
TTTtcgttaacgatttttgttcatgcgtttttttaattgagctatttctt
ttctttttattttgggGTTTGACCAAAAAAAGTATGGCGTCTAGGCTAAA
TTCTCTCGTCAAGATGAGAGCCCCTGTTAAGAAATGCTACCCAGATACCA
TAAGTGATATATTCGTCTATATACACATGGCCTCTGTTAGAAAAGCCTCG
GTCACCTTTAGTGTCACGGGCTGCATGCACTTCCTTTGATATGTTTtaat
ataggggatgcgtatcgtgtataaatTTCCGATTCGagagttacccccgt
ctttgtatTCTGAGTTTCAGAAACTTGACCAAGTAAGTTTTATATGAAAG
ATCTTTAAATTTCAATAGATTCGAATTAAAAACTTGAATGGTTAGAGGAT
ATTACAATCATTTGATTTCTgaaacttttaaagaaaattgaaacaggtta
TCCGGAATCACCCctacatcaaaatcaatttcgggGATGTGCGTAGCCTA
AGAATGTGTTCTAAAAATTTGGTTTGCGTAAGATGTTTGAGGTCAGGACA
CTGGCGCTTCGTTGAACTCTAATAAAATTAAACAGCTCTGCTAGTGGCAC
TTATTAAAAAGTGTAACAAATGTTTATTTGTATTTAATTCCAGCTTGTAT
GCCTGGTATATATGACCATGGACATTGCAATTACTACGTCTCTAAGAACA
AAGGAGCTTACTGTAAACACAGCTGGATGAAAATGTTTTGCCAATACGCT
TGTGGTTACTGCAAAGAAGGTAAAGAGGCTGTTGACTTAACCCTAAAAGG
TACCGTAAAAATACATTTGTCGCATGCCTGAATTTTTGCATGATTTGCAT
ACAGATCTGATGTATTTATGCATGCCTTAGGCTATTTAATATTGGCATTT
TATTGGTCATTTTCTTTATATACAtcccggggggtactacccttgtcgac
cgacgggggtgctccgctgaggttcgaaaaatggacNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNAAAAAAACTTTCAGCCCCTGTTATCTTTTATCAAATGTTTGTCATTGT
GAATTGGGAAAGAAGAAGTTCCTGGAACTCAAGGCTAATTTGACACTTTA
AGGTTTTTAATGGGGAATTTAAGAGCCTCTCTAACTCGATTGCCTCCTAa
gctcgaacaaatttgctcGTCCCTACAGTTAATCCCTTAAAACCCTTTCC
CcatttctcaaaatttccatGATTCGAACAAGTATGTATTTCACATCCGT
GTTTGATTAATGGAAAATCTACTGTACCTATTTCTATTGGGATAGGCACT
GCTTGAAACTTAACATATAACACAGTCAATATTAGACATTCTAATCCTGA
ATTTCTCTTATGGAACCAAGATTTCCACATTACAAAGGGAAACTGGTGTC
TGTTCTTAACCcaatcacacccctgtctcgcagcacTGGGAACTTTTATC
CCATTCTTATCGCATtctattacacccctgtctcacaaccccgttggaac
ttttttcctcagaagggacaaaaattcctattgaaataccaatggggata
gaaaatctattgttccgaggttaaaaaacccagtgaatacattgaatttc
gaatgtggatgaaatcaaagtcaatttcccgaTGGGGATTGTAGGGTGTT
TTTCTCAccagagatgaaatttttgccaaattttcagGTGAGGTTGGAGA
CGCCAGTGGGTCTGAGACACAGAGGTATCCAATCTTAAGGTCAAATAAAC
ATGATGCTAAACGAACCACATTTTTTCTAGGTGCACCATGTGAGGATGCT
GGTCAAAAATGTGAAATTCTTGCACAACTTGGATTTTGTGATTATTATCA
CACTCACCAAGAGTACATGAAACGTGCATGTCGAAAGTCTTGTAATTTCT
GTGGAAATGAAAACCCTGGTCCAAAAGAATAAAATTATCAACTGTGAAGA
GTTTTTGAAGCGAGACCTGAGATTTAAGCAATACGAAAGGCTATTGGAAA
CAGATTTATAcacattttggtcatttttgacATTTCTTCCTTCTCCACTG
GCTTTTGATTtgcttgatattttgaaaatctatgacagaaaatcaatttt
tttatccgTTTCAAGCTCAATGACTCTTACCGTGTTTTACTCTACCTACC
ACTTACATGTaatgtaaaaattgtaaatagcTCACCAGCTTTTATATATT
CACTTAGTATAATATTTTAGGAATATTTTGGAAAGCAAGTATCAAAACGA
ATCGGGAACGAATCACTCAATCCTTTTCTAATTTAACAATCTTGGATTGC
TTTTTGACGCTCTCACTTTAATAAAACTTAGAAATAAATCAAGCCCTGAA
ATAATACAAAGccgtaaaaaccttgaaaaatacCTTAGAAAAAGTTAGGA
TATTTTTCCACtggatattttgatatttttgatataGTTTTTAGGTCACt
tactctttttacaaagcattgatgactttttgtaagttgtgttttcaacg
acgcgaataaaaatatcgactatgacgctcatccaagatcttggatggtc
gtcatggttacttttgtcttcgctgattgcgcgatgaatagaatcttgat
tcgtcggcacagcgtaaatatatgattttgagctgtgttTTTCACGGTAT
TAATTGACATACCATTAATATAGGAAAAACAAGGCTAAAAGGTATTCTTT
ATTTGATACTTTAGATGAGGTTTGGGAGTTTCCATAAACAGTAGTTGATA
ATTGATTTTCATTCCTTAATTAACAAAAGGTGCCTTGGTAAATAtttaag
aaatcaggtgttttagagtccgc Coding sequence (CDS) from alignment at sc0000174:384195..388617+ >TCONS_00013847 ID=TCONS_00013847|Name=TCONS_00013847|organism=Clytia hemisphaerica|type=CDS|length=1107bp|location=Sequence derived from alignment at sc0000174:384195..388617+ (Clytia hemisphaerica)
ATGCAGAATCGAACCTTACTTGCTTTAGCCCTGGTATTGGCTGGCATAAT
TGCTAGTgaagCTTGTATGCCTGGTATATATGACCATGGACATTGCAATT
ACTACGTCTCTAAGAACAAAGGAGCTTACTGTAAACACAGCTGGATGAAA
ATGTTTTGCCAATACGCTTGTGGTTACTGCAAAGAAGGTAAAGAGGCTGT
TGACTTAACCCTAAAAGGTGCACCATGTGAGGATGCTGGTCAAAAATGTG
AAATTCTTGCACAACTTGGATTTTGTGATTATTATCACACTCACCAAGAG
TACATGAAACGTGCATGTCGAAAGTCTTGTAATTTCTGTGGAAATGAAAA
CCCTGGTCCAAAAGAATAAATGCAGAATCGAACCTTACTTGCTTTAGCCC
TGGTATTGGCTGGCATAATTGCTAGTgaagCTTGTATGCCTGGTATATAT
GACCATGGACATTGCAATTACTACGTCTCTAAGAACAAAGGAGCTTACTG
TAAACACAGCTGGATGAAAATGTTTTGCCAATACGCTTGTGGTTACTGCA
AAGAAGGTAAAGAGGCTGTTGACTTAACCCTAAAAGGTGCACCATGTGAG
GATGCTGGTCAAAAATGTGAAATTCTTGCACAACTTGGATTTTGTGATTA
TTATCACACTCACCAAGAGTACATGAAACGTGCATGTCGAAAGTCTTGTA
ATTTCTGTGGAAATGAAAACCCTGGTCCAAAAGAATAAATGCAGAATCGA
ACCTTACTTGCTTTAGCCCTGGTATTGGCTGGCATAATTGCTAGTgaagC
TTGTATGCCTGGTATATATGACCATGGACATTGCAATTACTACGTCTCTA
AGAACAAAGGAGCTTACTGTAAACACAGCTGGATGAAAATGTTTTGCCAA
TACGCTTGTGGTTACTGCAAAGAAGGTAAAGAGGCTGTTGACTTAACCCT
AAAAGGTGCACCATGTGAGGATGCTGGTCAAAAATGTGAAATTCTTGCAC
AACTTGGATTTTGTGATTATTATCACACTCACCAAGAGTACATGAAACGT
GCATGTCGAAAGTCTTGTAATTTCTGTGGAAATGAAAACCCTGGTCCAAA
AGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013847-exon-sc0000174-1491911889:384195..384527 | TCONS_00013847-exon-sc0000174-1491911889:384195..384527 | Clytia hemisphaerica | exon |
| TCONS_00013847-exon-sc0000174-1510915933:384195..384527 | TCONS_00013847-exon-sc0000174-1510915933:384195..384527 | Clytia hemisphaerica | exon |
| TCONS_00013847-exon-sc0000174-1575043694:384195..384527 | TCONS_00013847-exon-sc0000174-1575043694:384195..384527 | Clytia hemisphaerica | exon |
| TCONS_00013847-exon-sc0000174-1491911889:385238..385393 | TCONS_00013847-exon-sc0000174-1491911889:385238..385393 | Clytia hemisphaerica | exon |
| TCONS_00013847-exon-sc0000174-1510915933:385238..385393 | TCONS_00013847-exon-sc0000174-1510915933:385238..385393 | Clytia hemisphaerica | exon |
| TCONS_00013847-exon-sc0000174-1575043694:385238..385393 | TCONS_00013847-exon-sc0000174-1575043694:385238..385393 | Clytia hemisphaerica | exon |
| TCONS_00013847-exon-sc0000174-1491911889:387575..388617 | TCONS_00013847-exon-sc0000174-1491911889:387575..388617 | Clytia hemisphaerica | exon |
| TCONS_00013847-exon-sc0000174-1510915933:387575..388617 | TCONS_00013847-exon-sc0000174-1510915933:387575..388617 | Clytia hemisphaerica | exon |
| TCONS_00013847-exon-sc0000174-1575043694:387575..388617 | TCONS_00013847-exon-sc0000174-1575043694:387575..388617 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000174 | supercontig | sc0000174:384195..388617 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003582 | ShKT_dom |
Blast
The following BLAST results are available for this feature:
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