TCONS_00013841 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013841
Unique NameTCONS_00013841
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1145

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013841 ID=TCONS_00013841|Name=TCONS_00013841|organism=Clytia hemisphaerica|type=transcript|length=1145bp
AAGCGAATTTACAAGCAGTTTCCCTCAAAATACAGACACTTCGGTCCAAT
AATGCAATGGCCCAAGCAATGAAAGGCTGTGCAAAGACCATGGCAACAAT
GAACAAACAGTTGAAGTTAccacaaattcaaaaaatcatgATGGAATTCG
AAAAACAGTCAGAAATTATGGACATGAAGGAAGAAATGATGAATGACGCA
ATCGATGACGTCATGGGTGATGAAGACGATGACGAAGAAAGtgACGCCAT
CGTATCTCAAGTGCTGGATGAATTAGGTCTTGGATTAACCGACCAGTTAT
CCGAGCTTCCAGGAGCAGGAGGGAAACTACCAGCTGGTCAGAAAGCACCA
AGTGGTCAACAAGCAGTTGCTGCTGGGGGTGGTGAAGATGATGATTTACA
AAATAGGTATGTCACAGTATTGCAACTTTTCTCTCGGTGGACGGAAATAT
GTTCAGTTCAAATTTCGGATCACCGAGATTTCAAACTAGGAGTGTTatta
tcttcgctttctgatttgatcTACTCCCCCCCCCCTCTTCAGAATCATTT
AAGGAAAAAAAGTAGTTggagctccagcttctggactaaaggccggtctc
cacttgcgcgcgctgcgatcgcactttttggcttcaattctttttgcttg
gaCACGTCaaaggaaaaaaagtcagttcttttaaataactttcgaactac
tttttcaaatttaatgtataatagctcaaaattcaagtttgaGTATCCTC
tttacgataaaaaaagaatggacaaaaaatttaaatcctgaagctcacag
tATCTCGACAaacttgtatacttttttttggtgcatcCGGTAGTTATAAT
TATATAGCACTCTGACATCATCGATTCGTCTAACCTTGATTAGTTtgtta
ttacaaaaaaaaagtggtCTGGCGATTTTTTTGGTCTATTTATTACATTT
TGCGTGTCTACTAGACACGAAAGTGAAGTCAGTTATTTGAAGCAGTATCT
TCCCTAGTTCAAAGGTGGAATATTGGTAAAAGGTTacagacacccccttc
tcacagactcggtaggacttttttagccagtggggataaaaaagcggact
gaaactcgatgggggttAACATtcctatattttttatggctgggg
Run BLAST on NCBI

transcript from alignment at sc0000174:327698..334420+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013841 ID=TCONS_00013841|Name=TCONS_00013841|organism=Clytia hemisphaerica|type=transcript|length=6723bp|location=Sequence derived from alignment at sc0000174:327698..334420+ (Clytia hemisphaerica)
AAGCGAATTTACAAGCAGTTTCCCTCAAAATACAGGTAGGCATAAGGGAA
ATCCTGGAGCAGCTGAGCTTAACaactaaaagagaaaaatagacCCTATT
ATAGAAGTCAATTTTTAGTGAAACCTTTTACCCAATTCTCTGGATAATGA
AAAGATTTATTCTAAAGCTCTCAATTTATTTTAACTTATATTTTTACATA
TAATCTATCTTGTAAATTTTAGACACTTCGGTCCAATAATGCAATGGCCC
AAGCAATGAAAGGCTGTGCAAAGGTATGGTTTTTTTTAGTTTGCGTTTTT
GGCTTTTGTTGAGCCTGTCAAAATCAACTCAATTTCAAAGGATATCTTAT
TCATGTACATTCCTtctaaatatctttttttgtctATTTCGCCACCTTTT
ACTAAGAGATGAAAAATAGGATGGTTAGAATTACAATTTGAGACAAGTAG
ATATTTACTTACTTTGTTGCAAATCAGGTAAAAAGTTTCGATCATTGATT
CCATCCAGCATGTTTTTTTCTATCTTTCTTGTCTCTAGCAAATGGTGACG
AAATTAGAGGGGTAGCCAACATTAGACGTATTTACGGTGTCTCTAAATTA
ATGGTGGAATTTCATTGaatgttgtttttctttcttatagACCATGGCAA
CAATGAACAAACAGTTGAAGTTAccacaaattcaaaaaatcatgATGGAA
TTCGAAAAACAGGTATAAAAAACGTTATTTAGCGATTTTATGCTACAGTA
GAGTCTTCATATAATTCTGATCTCTCCTATCTCTAATGTCTGGCCCCTCT
CAGTTAACGAATCCGCATAAAATCGAAACCAGCCTATACAACTTGAAATT
TCTACAActctagaaatttttattacccTTGTGTGTTCGAATTCTATTGA
TTTGGAATATATTCTGGCAGGAACCAATGGACAGTGATTGATCTACACTG
GGAGTCTAGTAACACCCTATGCTTCCCAGTTTCCAATTCATGTTAAAACA
TTCGGGAACAACATCGGGTCTTTTGTCCTAAACCAATAATGTCGAGTCCT
ATGAAGGATTCGACGGCATTCGGCCATTTAATATCATAAAAATAAAGGAC
TAATGGTATCAAGAGTTTTTAAAATGCAGCGATCCCAATCTCATTACAAA
TTTCATATTAACTAGCACAAATCTAAACAATGAAAAGTATAATATGAAAT
AAACAATTTTACTGAAAGCATTTTCCCGCTAAAGGATCACACCCCAATGA
ATGTCATCTAATCATAATTAAATGTCATCATTCTTCTGGGCAATGACTTC
ACATTGTAGGATTTTAGTGCAGGGTGGCCACgcatgctggaaaaactggG
AAACTGAAAAAATggcctttttcagaaaatttactggaaaaactggaaat
agGTACATTTTTCAAACAGGaaagctggaaaaactggaaaaatatttttt
gatcttCGCATTTTAACTTTATGCCAGGATTTCGTTAGAATTATTATTAT
GTGATTaacatatatttttattatttattatataaTTTTCATAAGATGTT
ATGATGATGTTATAAGATGCTAGTATAGGCTTTTTAGGATTTTTATGAGC
CTAGATATGTATGATCGATTGAAAAgaaatgtcttttgaaaatgtAGAAT
TAATAATTTTGCACTCGCCTATAGCTGGAAAAAGGTACTGATCTTTGGGT
GAAGGCTGGAAAAAGGTACATTTTCCAACTGAAAATACCTGGAAAAAAGG
GtgttttttaccaaaaaagttggatttttCTTCTAAAAGAAGCGTGGCCA
CCCTTAGTGCCTGCACTGCATCGAATAGTGGTTGTAAAAGATTCCTAATT
ATTGCTTTTAATAAAACTTTCTTCATCTCTTTCAGTCAGAAATTATGGAC
ATGAAGGAAGAAATGATGAATGACGCAATCGATGACGTCATGGGTGATGA
AGACGATGACGAAGAAAGGTATGTCggagcaaaaaaaacaagcaacatgc
tgaatggacctacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccacttcagccattcttt
agagaatcttgccctccatctttgtacaaaaatcagaaaaaagtaatgac
aggattttgcacaaagtccaaaaaaccctattcttaggtagtttttggcc
taaatttgcccaaataaattttttctcaaaaatcgggctccgtcacgttc
tgggcattgccattttgcatcattttgcaaaaaatcagaaaaaactaatg
agccaatcctgagaaaagctggtaacagacggacagacggacggacggac
ggacggacggacggacggacggacggacggacatgggttaatttatagaa
cctccaccggggcacccgtcggtaggtccaaaaaactggACTACCAAGAT
ATTTAAAATGAGAGTTGAATAAAATCTTATTTCAAACTCAAAGTTTCGTG
GCGCGTGTATGCTTATCTTCAATTAAAATTTAGTCTGATACTGCTCTTTA
AATTATCGAGCACTACACAAAAAGAAGATAAACTCCTCCCAAATACTACC
AAGATATTATTTCTCATATTATCCTTTTGTAGGTAACGTCTCGAACCTTT
ATcttaaatttctattttcttttcttcaagTAATAATATTGTTACATTtt
gtaattaacttttttaattttttcagtgACGCCATCGTATCTCAAGTGCT
GGATGAATTAGGTCTTGGATTAACCGACCAGGTACAAGCATTCAAATTTG
TCAGAAATTTTTGTCTCTTTATCCTATGACCTTTATGTGTCTAATCTTTT
AAGGATTCATCGATCTTGTAGAGATCTTTCATGGCATTTATGCCTcaagc
taaggctacactgatgATTTTgcaggcggctgcaatgcaattTTCTTGTA
AAGTTATAGGCTGGTTTCGAATTGCATTACAGCCGCCGGAGAAAAATCAG
TTGTAGCCTTATAAAGTTATAAGTCAATCGTAAATACGCTTTTACTTGAT
ATCTACAAAAAAGTAGTAACGAGTTCTAAATTTGAGTATGACAAAAAATT
CAAGCAGGAATTCAATGGCTGTTATTGCCTACAGATATANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttttttttttaattccc
cccccccccccctcttcaGAATCATTTAAGGAAAAAAAGTAGTTggagct
ccagcttctggactaaaggccggtctccacttgcgcgcgctgcgatcgca
ctttttggcttcaattctttttgcttggaCACGTCaaaggaaaaaaagtc
agttcttttaaataactttcgaactactttttcaaatttaatgtataata
gctcaaaattcaagtttgaGTATCCTCtttacgataaaaaaagaatggac
aaaaaatttaaatcctgaagctcacagtATCTCGACAaacttgtatactt
ttttttggtgcatcCGGTAGTTATAATTATATAGCACTCTGACATCATCG
ATTCGTCTAACCTTGATTAGTTtgttattacaaaaaaaaagtggtCTGGC
GATTTTTTTGGTCTATTTATTACATTTTGCGTGTCTACTAGACACGAAAG
TGAAGTCAGTTATTTGAAGCAGTATCTTCCCTAGTTCAAAGGTGGAATAT
TGGTAAAAGGTTacagacacccccttctcacagactcggtaggacttttt
tagccagtggggataaaaaagcggactgaaactcgatgggggttAACATt
cctatattttttatggctggggatttcaaatcttcttttttttNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Nacggacggacatgggttaatttatagaacctccaccggggcacccgtcg
gtaggtccaaaaaactggACTACCAAGATATTTAAAATGAGAGTTGAATA
AAATCTTATTTCAAACTCAAAGTTTCGTGGCGCGTGTATGCTTATCTTCA
ATTAAAATTTAGTCTGATACTGCTCTTTAAATTATCGAGCACTACACAAA
AAGAAGATAAACTCCTCCCAAATACTACCAAGATATTATTTCTCATATTA
TCCTTTTGTAGGTAACGTCTCGAACCTTTATcttaaatttctattttctt
ttcttcaagTAATAATATTGTTACATTttgtaattaacttttttaatttt
ttcagtgACGCCATCGTATCTCAAGTGCTGGATGAATTAGGTCTTGGATT
AACCGACCAGGTACAAGCATTCAAATTTGTCAGAAATTTTTGTCTCTTTA
TCCTATGACCTTTATGTGTCTAATCTTTTAAGGATTCATCGATCTTGTAG
AGATCTTTCATGGCATTTATGCCTcaagctaaggctacactgatgATTTT
gcaggcggctgcaatgcaattTTCTTGTAAAGTTATAGGCTGGTTTCGAA
TTGCATTACAGCCGCCGGAGAAAAATCAGTTGTAGCCTTATAAAGTTATA
AGTCAATCGTAAATACGCTTTTACTTGATATCTACAAAAAAGTAGTAACG
AGTTCTAAATTTGAGTATGACAAAAAATTCAAGCAGGAATTCAATGGCTG
TTATTGCCTACAGATATAATAAGATAAAACTTaatccgaaaattgatttt
gctatggaacacaaacaacaaaattttcattttttgaaaaactaatttta
tttcgCTTCATAACCAAAGCATCGTCAGAGTATAGAATGATTTCATTAAT
TCATGCCTCTCTATTGGTCTCCCCGTTCAAACAAAAAGCAACTAAAATTa
cactgtttttatttttcatcttagTTATCCGAGCTTCCAGGAGCAGGAGG
GAAACTACCAGCTGGTCAGAAAGCACCAAGTGGTCAACAAGCAGTTGCTG
CTGGGGGTGGTGAAGATGATGATTTACAAAATAGGTATGTCACAGTATTG
CAACTTTTCTCTCGGTGGACGGAAATATGTTCAGTTCAAATTTCGGATCA
CCGAGATTTCAAACTAGGAGTGTTattatcttcgctttctgatttgatcT
ACTCCCCCCCCCCTCTTCAGAATCATTTAAGGAAAAAAAGTAGTTggagc
tccagcttctggactaaaggccggtctccacttgcgcgcgctgcgatcgc
actttttggcttcaattctttttgcttggaCACGTCaaaggaaaaaaagt
cagttcttttaaataactttcgaactactttttcaaatttaatgtataat
agctcaaaattcaagtttgaGTATCCTCtttacgataaaaaaagaatgga
caaaaaatttaaatcctgaagctcacagtATCTCGACAaacttgtatact
tttttttggtgcatcCGGTAGTTATAATTATATAGCACTCTGACATCATC
GATTCGTCTAACCTTGATTAGTTtgttattacaaaaaaaaagtggtCTGG
CGATTTTTTTGGTCTATTTATTACATTTTGCGTGTCTACTAGACACGAAA
GTGAAGTCAGTTATTTGAAGCAGTATCTTCCCTAGTTCAAAGGTGGAATA
TTGGTAAAAGGTTacagacacccccttctcacagactcggtaggactttt
ttagccagtggggataaaaaagcggactgaaactcgatgggggttAACAT
tcctatattttttatggctgggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007733XLOC_007733Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013841-exon-sc0000174-1491911889:327698..327732TCONS_00013841-exon-sc0000174-1491911889:327698..327732Clytia hemisphaericaexon
TCONS_00013841-exon-sc0000174-1510915933:327698..327732TCONS_00013841-exon-sc0000174-1510915933:327698..327732Clytia hemisphaericaexon
TCONS_00013841-exon-sc0000174-1575043694:327698..327732TCONS_00013841-exon-sc0000174-1575043694:327698..327732Clytia hemisphaericaexon
TCONS_00013841-exon-sc0000174-1491911889:327920..327970TCONS_00013841-exon-sc0000174-1491911889:327920..327970Clytia hemisphaericaexon
TCONS_00013841-exon-sc0000174-1510915933:327920..327970TCONS_00013841-exon-sc0000174-1510915933:327920..327970Clytia hemisphaericaexon
TCONS_00013841-exon-sc0000174-1575043694:327920..327970TCONS_00013841-exon-sc0000174-1575043694:327920..327970Clytia hemisphaericaexon
TCONS_00013841-exon-sc0000174-1491911889:328338..328409TCONS_00013841-exon-sc0000174-1491911889:328338..328409Clytia hemisphaericaexon
TCONS_00013841-exon-sc0000174-1510915933:328338..328409TCONS_00013841-exon-sc0000174-1510915933:328338..328409Clytia hemisphaericaexon
TCONS_00013841-exon-sc0000174-1575043694:328338..328409TCONS_00013841-exon-sc0000174-1575043694:328338..328409Clytia hemisphaericaexon
TCONS_00013841-exon-sc0000174-1491911889:329583..329665TCONS_00013841-exon-sc0000174-1491911889:329583..329665Clytia hemisphaericaexon
TCONS_00013841-exon-sc0000174-1510915933:329583..329665TCONS_00013841-exon-sc0000174-1510915933:329583..329665Clytia hemisphaericaexon
TCONS_00013841-exon-sc0000174-1575043694:329583..329665TCONS_00013841-exon-sc0000174-1575043694:329583..329665Clytia hemisphaericaexon
TCONS_00013841-exon-sc0000174-1491911889:332953..333007TCONS_00013841-exon-sc0000174-1491911889:332953..333007Clytia hemisphaericaexon
TCONS_00013841-exon-sc0000174-1510915933:332953..333007TCONS_00013841-exon-sc0000174-1510915933:332953..333007Clytia hemisphaericaexon
TCONS_00013841-exon-sc0000174-1575043694:332953..333007TCONS_00013841-exon-sc0000174-1575043694:332953..333007Clytia hemisphaericaexon
TCONS_00013841-exon-sc0000174-1491911889:333572..334420TCONS_00013841-exon-sc0000174-1491911889:333572..334420Clytia hemisphaericaexon
TCONS_00013841-exon-sc0000174-1510915933:333572..334420TCONS_00013841-exon-sc0000174-1510915933:333572..334420Clytia hemisphaericaexon
TCONS_00013841-exon-sc0000174-1575043694:333572..334420TCONS_00013841-exon-sc0000174-1575043694:333572..334420Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000174supercontigsc0000174:327698..334420 +
Expression
No biomaterial libraries express this feature.
Blast
[Close]
BLAST of TCONS_00013841 vs. Swiss-Prot (Human)
Match: CHM2A (Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.694e-39
Identity = 89/109 (81.65%), Postives = 99/109 (90.83%), Query Frame = 3 
Query:    3 ANLQAVSLKIQTLRSNNAMAQAMKGCAKTMATMNKQLKLPQIQKIMMEFEKQSEIMDMKEEMMNXXXXXXXXXXXXXXXXXXXXXQVLDELGLGLTDQLSELPGAGGKL 329
            AN+QAVSLKIQTL+SNN+MAQAMKG  K M TMN+QLKLPQIQKIMMEFE+Q+EIMDMKEEMMNDAIDD MGDE+D+EESDA+VSQVLDELGL LTD+LS LP  GG L
Sbjct:   81 ANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLPSTGGSL 189
The following BLAST results are available for this feature:
BLAST of TCONS_00013841 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHM2A1.694e-3981.65Charged multivesicular body protein 2a OS=Homo sap... [more]
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