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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013823 ID=TCONS_00013823|Name=TCONS_00013823|organism=Clytia hemisphaerica|type=transcript|length=2300bp
CTTCAGTACAGATCTTGGAGGAAATGTCGAGAAAGGAGGAAAATGGTCAC
CTACATGCAAACCTAGGCGGAAGGTTGCCATTATAGTGCCCTTCCGTAAT
CGAACAGaacagttgaaaatatttttgcggcACATGCATCCTTTCTTACA
TCGTCAAGAGTTGCTTTATCAGATCTTTGTTGTTGAGCAGCTTGGGATTG
ACACATTTAATCGTGGAGGTTTGTCAAATATTGGATATGTTGAATCGTTA
AAAATGAATAAAGAATTTGACTGCTTTATTTTCACGGATATTGATCTTTT
GCCTGAAAATGATCACAATTATTATGGCTGCCCACGGTCACCAAGACATA
TGTCAGTTGCCATAGATACGTTTAATTACAAgtTACCATACGGTATCATA
TTTGGAGGTGTTGGTGCTTGGTATAAAGAAGATTTTGAGAAGATCAATGG
ATATTCTATGGCATACTGGGGCTGGGGTGGCGAGGATGATGACTTGTTCT
ATAGAGTTCATCATGCCAAGTTAAAGTTCAACAGAGCGCCTGTAGAAATT
GGGCGCTATAAAATGGTGAAGGTCCATCATTTCCGAAGCTCAAAACCCAA
CCCTATCAGAGTGGAGTTGCTGAGGAATTCAACACAACGAATGTATTCGG
ACGGTTTGAATACACTGAGAtacaaattgaagaaaatttcagaGCTTCCT
CTTTATACGCTTGTTCAAAtcgaatttaaaaaagaactttATTTTAAAGA
TGGAAAGTACATAGCAAAGGTTCTAAACTAGTTCAAACAAAGCTATATTA
CTTAACATCGGAACAGTGGCGTATGATCAAAATTTGCAAATTAATTTCTG
ACCCGTGTATTCTCGGTTTGGTCGTTGGGAAATAAACTCTAGTTTAGACG
CCTCAcctttcgccctgcctattctaattgtaagAGTAGGCACAATTTCT
GCTTACCTTAATTCACAactagaataggcagggcgaaaagttggccgtct
aaactagaggtAATTGAATCTACTCAAAATGGATGCATCGAAAAGAGATT
GAACGAGCTGTTTTCGATCAtgcattttgtatttatctcgtAAATGTATA
TTAAAATGAAAGTGGCAAATTAAGCTACAATAATTTTAGATTACGTCCCT
AAGTTCTTATAGTCCTAAGGTtcaaattttcatgataataaCTTATTGGT
CCCATCAGACATAGCAACACTGTCTATTTCTCCTTAGAAGATGATGAACA
CTAACTAATATTTACGGATTTATTCAATACTATTTATCAAGTTATTTagt
tgaaaattatttcttagtATTTTCCTAATCCGTCATTGCCTCGCAATGCT
GATAAATTatatcatggaggtataaagaaacaggagaagtatgctattgt
aaccaagctcaccctacgattaaaaaagttacgatgtatgtatcggtatg
catgctcataatctcatatatcttgcatttttaatgagctcttttattca
ttggtgaaatcttattggctcgttgaagatttaaaaattagttgagacga
gattcattgtttctgacatcagtgtaagaaaatatttggactaaaaaagc
ctgtaaacttggcaatctctcgtcaaataataagatttttcgataaatgt
tttctttaagatAAACTCTTTTGCTTCATACTTTcttccaaaattctcca
gcgactttatgtctacaaattgagtctgaactGAAATTGCGTGTGCTTTt
attaaagaacttttcattttctggcttgagaaaatatcttttcaaaacaa
aaattgaacggataacgaaatggaacataaacttgtgtcgtggacgaagt
tttatttaattttcgtatattaaaaggctagaatcttcaattCTTCAATA
CTGATGCataattagaatgttcagagcaaacttgagaatttcttagaatt
tcttttgatacattttatgaaagaaatcaaaagactttaacgaccaatta
ccgacacaacagacacattcaactcctgtttttctttatacgaTTATACC
TCTATTATTATATATATACTAATgttatattttgtatttattaattaatt
tatttcaaGTATTGCCTATGGCCTTCTTTAGTCACCATTCTTGGTTTTAA
TCGATTCTTATTTCAGCGATCTCTCTCTCTAACCAAAATTCAGGTTCACA
ATATAGTAATATTCGAGGTAATATTAGTTATTTGTAACTGTCTGCATTAT
AGTGTAAAAATATTCACttaaataccgtaataccgtcgataAAAGAAGCC Run BLAST on NCBI protein sequence of TCONS_00013823-protein >TCONS_00013823-protein ID=TCONS_00013823-protein|Name=TCONS_00013823-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
FSTDLGGNVEKGGKWSPTCKPRRKVAIIVPFRNRTEQLKIFLRHMHPFLH
RQELLYQIFVVEQLGIDTFNRGGLSNIGYVESLKMNKEFDCFIFTDIDLL
PENDHNYYGCPRSPRHMSVAIDTFNYKLPYGIIFGGVGAWYKEDFEKING
YSMAYWGWGGEDDDLFYRVHHAKLKFNRAPVEIGRYKMVKVHHFRSSKPN
PIRVELLRNSTQRMYSDGLNTLRYKLKKISELPLYTLVQIEFKKELYFKD
GKYIAKVLN Run BLAST on NCBI transcript from alignment at sc0000174:71301..82160+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013823 ID=TCONS_00013823|Name=TCONS_00013823|organism=Clytia hemisphaerica|type=transcript|length=10860bp|location=Sequence derived from alignment at sc0000174:71301..82160+ (Clytia hemisphaerica)
CTTCAGTACAGATCTTGGAGGAAATGTCGAGAAAGGAGGAAAATGGTCAC
CTACATGCAAACCTAGGCGGAAGGTAAAATATCTTAGGTGTGGGGACACT
GGACGTCAAAAAGGCTCAAAGTtatcttattttatttttaaggctttact
tAAAATGTAGACTAAGAAAAAAgtccaaagccgaagaaaattcgcaaaca
ggAGTTTTTGCCGAAaggagtttacagtcggtagagttgccagtcttctT
CGAAACTCTACCGCCGATTATTTTTTCCGTATACTACCATAACGCCatca
taccgccatattttcccgcctttactataattgtaacggacgataacatc
gtttACTTAAAATGAAGGTattgaaatattgaaatgaaGGTAAAATATAT
TAAGCATCTTTCAGAGCTTAATTCGGTCGTGCGGGAATGGTGATTTCATT
ATTTCCACTTTATTACAATGAATATTTAGATTCAGGCTATATCATTTTTG
GATTCTGATATCCAAAAGTGTAAGTCTAAATTAGATTAAATTAGATTTCA
TTAAACACAAAAACTCAAAGTAAAAAATCCACATTCCAGAAATAAATTAC
ACcacttaaaaatataatttcaaaaattaaatttttggagTAAAATTTTA
CAATGCATTCCCATTGGTGAATTTATTTACGGTTCCGAAAGACATGTCAA
GAGAAagtcgttctgtaaattactaatttgaaagattttcgcGTGCTAAT
AAAAATGGTAGCTATTTCCGAACTCATCACACGTCTTTCAAGCTCTCTAG
TATATTCTCTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTTC
AAGCTCTCTAGTATATTTGGGAGAAATAAGATCAAATATTAAGTTATTTT
TGGAGTAATAACACAGAAGCGGTCAAGTTATTCTGTATCACAATGCACAA
ACTGACAGATGGGTGCCGTAAAACATTGGTTGTAGACAACATCGATGGAA
GTAATTCAAGTTTTGCCCACAATTTTTATCAACAAAGATTAAAGGTTCGC
TCTCGACATCTTAAAGAGAAACCAGCAAGTTAGCCAAACCCTGGCAAATC
CGATCGATCAGCATTATCAAGATCCTACATATCAATTACTGCTACCATTG
GACCAAAAATGGATTCCCTCGATCAAAAGAGAAAACAAGAGACAAACAAG
GAATTGCAAGCTAAGTATTTCTGATTCTTCTTATTTTCGTTATATAACTG
AGCGTTCTCTTGCTCCGTTAAGTTTGGATAGACAATATCAACAAAGTTTG
TGTTAGGAGATATAGCTCGCTTGGGAAAACTCATAATAACAAAAACTCTA
CAGGgaagattttttttgtcatctaaATCAATCTCAAATGCCTTGGAGGA
ACTTATGTTCTTGCAGGAAATCAGTCATCAGTGTTAAACTTAATGGGGAT
TTCTTTTATCAAAGTTGTTTTGCATTGTGACAAGGAAATATAATAGTGAC
ATTTTAAATAATGATGTCAGAAATTTATGGCCTCGTTAATAAGGAGATAC
AATTATTAGCAAACTGCTTTTACACTTCGAGCTTTTGAATTCAAATTAAC
AAAGGAACAGTGCTCTCTCGTACATAGATAATATGGCATCACCAAGAATT
GGTAAGGTAGAAGCAATAAGAAAAGGTACAATATCTGGCAAACCTCGTTt
acaagaaatataatttttgagaatAACATGGATTGCTAGAAAGCTTAaaa
ggaatttaattttttttttcttcatatttttggaaataccTAAATCACGT
CATTTGTTtacagaaaatcaaatttattttaatgCAATGCGTACGTTGTT
AGGGGAATAAGTCGAGCCGTCTGTTTGACGTTAAAGTGTtcagaaagaaa
ttggaaaaGTTCTTGCTTTTCTTGATAGGGAGTGTAGCCATAACTTTCTA
TCCATAAATGGTTTAACCAAGAGACAGATATcattaaaaagccatttttg
aGGGAGCAAAACTATGTTTGAACTTTCCCAAAGAAGTGAGTGAAAATGAG
TTTAGAgtcgatttaaaaaagaaaaaatttttaatggAATAGgctgaaaa
cctcaaatttaGTCCACGTAAAACTGAATCCTTCCTGAAatagaaaaatg
attttacgatcttcaaattttttctcGTTTGCGAAATATCAAGCTTTAAA
GTCGATGTTTTAAGGTTTATCAcagtttatcaagagttattgatttgatt
cttataaagtaggtgCTTATAATAAATCAGATATGCTGACATTGTGCACA
attatttattaatttgatGTTCGATCACATTAGTTTTTAGCGATATTCTT
TACAATATTAGAGAATGATTAAATGTTTATTACACCGTGTCAACCACTTT
CGGTTTCTAAATTTTATTCCGTACCGCCAAAGCCagtatcgtaatacttt
cgctaggtgGCGAAATTAAAAATGGACAGATTGGACAAAAGTATATACCG
AAGTAAACTCGTTGCCTTCTCAAGAAAAGCACGTAACTTTCATTCTAATG
TTTCAATTTGAATCTGGGAAGTCCTTTACGTTGTTTGAAGCTTTACGAAC
TATTTATCATCCTATTTCGGGTTACGCGATCGGGTCATTTTCAACTGTAA
GGCACTATTCAAGGGTTTTAAATGCTCCCCGTCTTCTACCCCCAAAAGGA
TTAAGGGTTTAGAGGTGAAGATTTtgcgtaaaatattttttttcttgatt
atttCCATTTTAATCTAAAGTGGTAGACGGATGTCTGACAGGGAAGGTCA
TTAGGTAAATGTTGTAAGGATGTTTTCTGATATCTGCCTGGTTAAGGGGC
TAGAAAGGAATCTCCAAATGGCAAAgatggaaattattttttttttaata
ttaattTTTAGATGGACTACAAAATCAAAGCGTAATCAGATGTTAAGACG
TTGAAAAATCGAAATCATACAGCTCCGTTAGAGACGACACAAAGAAAGTG
TTTGATAAAACGAGAAAAGGATGTGTTGTTCACAATTTGAGGTCAGGTGG
TGCTTCAGCTGCGGGTAATCCTGGAGTGTCGTAGAGGCTCATTAAAGTCA
CAGTCGCTGGATATTGGCGAAAATTTAAANATCAGATGTTAAGACGTTGA
AAAATCGAAATCATACAGCTCATACAGACACAAAGAAAGTGTTTGATAAA
ACGAGAAAAGGATGTGTTGTTCACAATTTGAGGTCAGGTGGTGCTTCAGC
TGTGGGTAATCCTGGAGTGTCGGAGAGGCTCATTAAAGTCACAGTCGGTA
GATATTGgcgaaaatttaaagaatttattATTTATCTCTAGGTCTAATTT
GTAGTAAGCTTCCAGCCTTATCACTGTCTCATGCTTTTAGTCGACAGCCT
TGAAACGCCTAACTACTAAACTAAATAAAAGGGTACAAGCCTGTCTCAAC
AAATTATCTCGTTTTcactttcttcattttcttagaTTTTGCTTTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAGGCCCTTACGGTTTCC
TCTACGACAGCCCAGCTAAAATTTGAGACAGCCTGGGCACCCAATTTTGA
CCACCGGGGTCTGGAGGTTTTTGTCCGGGGGGACTTGATCAATCCGTTGT
CTAAGTCAACAAGATAGCATGAAGATAACGGCTTCTATAAAAAAGCTCAA
AGTAAGTGaatttgatataaaaaaaaaaaatttaaaagaagtgCCTAAGA
GGACCTCAATTTTTTAATATCGGTTATTGCTGTAAAGTAGGTGGTATTCA
TTCCATTTTGAAAGTAATATTTTAATTGGATTGATCCCACAGGGATTGGT
AAAAGGAAAGTAGCGTTTTATATCAAAGGGAAAGTAgtgtattttatcaa
aattaggTTTATTTAGGACCTCAAGTATATTGACATTGATAACTGCTGTC
TAACTTTTAtcgataacttcaattttgacGGTAGGCAAAGTANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCTTAGATTTTGCTTTTAAGGCCTTTAACA
GTACTTGCGTTTTTTCTAAAggattagtaaataaataaggttattttcgg
ttcaacgattagaaaataactttaaaataatGTGACTCGTTTCTAAGCTT
TTAGTTTGTTTTATGATTCTGATGATAACACAAACTTTGTCAGTCTACCA
ggtcaaaaattaaaatgaaaaaatgaaaaaataaaataacatgAAGATAA
AAATATACCATATTTTCTCTATGGATTATTATACGGGTCCCCTCCAGTCG
TCATTAATATTTACCCCACCCCCTGAATCCTAATTTATCGTATAATTCTG
TATTTTCAGGTTGCCATTATAGTGCCCTTCCGTAATCGAACAGaacagtt
gaaaatatttttgcggcACATGCATCCTTTCTTACATCGTCAAGAGTTGC
TTTATCAGATCTTTGTTGTTGAGCAGGTATATGAAGGttctgtttgtttt
attgttcaGACATTTCTCActttattttttacaaagtgAAATCAAATATT
ACACAAACAGAGCATTGTAGCCACATAGGGAACTAGAGGGTAATAATCTC
TTTTGGGttttaaaaaatctctttttggttttcaaataatattctttttt
tgcattttccacTCGAATTCTCGTACATTTATTTGTTTTGGGTGCCTTCT
CCAGCAATATTCTGAGAAATGCTTCCTAGTTTTTAaagccaaaccatggt
tggtcCTCACGTTATGTCATTAAACTTCAGCCCCTCCCCCATTATCAAAA
TGCTTTCTACGGTGCTGCAAACATTTGTGTAGCGAGCACCTTACCAAAAA
CTGGGATTTTTCAtttcgtttcttagtgagtttcactttgacgatttttg
aaaattagaagcCTTTctagtgctttgacgcaaatacACCGTTTAATAGT
GTCGACTGCACAcgcgtccaaacaattttccattgttttgattttaacgt
CCGCTCTTTCCCGttaaaaaacggtaggtaaaattCCGGTTCTCGTAAGG
AAACCTatcagagaaatggtaggtaaagaactccttttaatcataacttc
ttttcctcttgatgaatttttgtgaaattttcaggagagatccataaaac
tatcattaatatcatgttcaaatatctaaatcattctccttaaaggaaag
aaaaaattgacaatatttacattcctctaaccttccacattactaaagtg
cgcatttttacctaccgtttttacGGTGGAACACGGAAgagatagcgaga
ctcctaaacggtgtattgtatattttttcactACTGAACactttatgacg
taatcttttttccaagcaaaaaggattgaagtcaaaaagtgcgatcgaag
cgcgcgaaagtggagaccggcctttaaagTGATGTCCAGGAGCAGCCAGC
AgcggaatttttcaaaatatctgttcttctTTTCCAAGAGAGGAAATTTT
GGAGTAAAATTCAGAAGCGATCTttcaagcacttcaaaaatcgaGCGTGA
AAGGAGTGTGAAAATATCTGTTCCGAAAATCCAGGagcaatgaattagaa
aaaaaaaatcatttacttTTCCAGCAGGCCGCAGACGTGCCCTTCCTAGA
GAATTCAGGACTAAGTTTAAACGAAGGAAGAGTAGATGCTGTTTTTCCAA
AAACATCTCGGcgttcaattaaattacataaGAACAGATGAATTTTTCCA
GTAATCATGATTTAACCTCAGAACAGAAGCAAATTTCCAGGAGCATGATT
TGTTTCAATAACAGATAAGTTTATCGTTTTATCTATGGAGCCTGGCAAGA
AAATAACAGATAATTTTTTCCAGGGAAATTTACCTTTCAGAGCAgataat
ttataatttctaaaatttctaaatttgttaTTTGTATCTTTTAAGCTTGG
GATTGACACATTTAATCGTGGAGGTTTGTCAAATATTGGATATGTTGAAT
CGTTAAAAATGAATAAAGAATTTGACTGCTTTATTTTCACGGATATTGAT
CTTTTGCCTGAAAATGATCACAATTATTATGGCTGCCCACGGTCACCAAG
ACATATGTCAGTTGCCATAGATACGTTTAATTACAAGTAAGTTTGCTGCG
ATAGTGATATTCATGTTTAGGTGCCAAAGCTTAAACGTTTTCTATTATAG
CCATGAAATTAGGCGAGGTGGACTAAAAAGGTTTATGGTTATAAACTAAC
ActaattttaaattcaatgatCGTAGTAATGCATTTATCTCCACGTTCCG
TAACATCGAATTACCTTATACCTTTTTACGTCGGCCCTAATATAGCGCGC
CATTATGCTGGGCCTTATTACGCGCCAGTGACGAAAAAATAATGCCAACG
GCGGCAgtcgtaaaaagggccaatcagGTAGATCTTTGTtactcttcaaa
attttcaggtTACCATACGGTATCATATTTGGAGGTGTTGGTGCTTGGTA
TAAAGAAGATTTTGAGAAGATCAATGGATATTCTATGGCATACTGGGGCT
GGGGTGGCGAGGATGATGACTTGTTCTATAGGTTTGTGGATTTTCTACAG
ATCAAATACTTATAGTATTGGATAAATTAAGTGCCACGTTCCTTTTTTTT
CTAAgctttttaggaaaatttctaGTTCAAACTtgaaaggcttatatctc
cggatctagaagaaGTTAGAAGCTCAttcatagctcgttggatagctaag
agtctcttctttctttgcTGCGTGGACCTGACTGAATGACAAAAAGGTGT
CCAGTGGTAGAACTTCAAATCTGTTCGCTAGAGAATAGAATaaagtaaag
cagggccaaatttggggGTTCTTgcatcactcgttgaccaacaATGgtaa
aaaacggtcaaaatatcaaaaaagttgaatttttacatttttttgacttt
ttgacttaaaaactttttgacTAAACATGAAGCTCGTACGAGTTAGAGAA
AACGAGTTAGAGGCAAAAATCACTACTCTTTCATTGAAAAGATCTGCACC
TTGCCTCATAATTTTAGGCTCCCAGTCCTGCCTAACGCTTCAAAAGCCTC
GATTACTTTATTCTCAATCCAACCTGTTAACTTGTATCTTTCTTCAAGAG
TTCATCATGCCAAGTTAAAGTTCAACAGAGCGCCTGTAGAAATTGGGCGC
TATAAAATGGTGAAGGTCCATCATTTCCGAAGCTCAAAACCCAACCCTAT
CAGGTGAGAGCTATTTATTGATTATTGAAACTTGGTTCTCTTCATTTCTT
CAAACATTTTGAAGCCTCGATTGTAAACCCTAGGTTGATGGGTACTGGGA
ATAAGGAAAATCTCATTGTAAACCCTAGGTTGATGGGTACTGGGAATAAG
GAAAATCTCATTTTAAATCCAGGTTGAAGGGTACTGGGAATAAGGAAAAT
CTCATTGTAAATCCAGAGTTATAGGCGTTCGGAATATCAGAATCcaagta
gcaaaattccatgatggtgatattcttagcattatttttaatttttggcc
attttcatcatgataaataaagtgtattcttattaaaaaaagcgcgtaag
gcttttcttttaaattgaaaacgCGGTGTGCAAACGCTACTTCGACAGGC
ACCCGCAATTGACACCGCTTGCAATTGAAAAACATACATTCGGTgattct
acaatcatggacaaaacatttgagacaaaagggattTCCTTGCGAAGCTT
TAAACCGCACCGcacaaatgattttaaagcGTGTTAAAGTACGTTTGAAA
AGTAGAGTTTTAGTTCTGAGCTTTAACAcgagacttaaaacttaggacct
taggatcttaagattttaaagctcaaatttgctccaataaggcttggaat
acagcctagaagccaccaaacccctccagaatcgaaatattcgatgaaag
aAAGTGCGAGTGCTGAAAAACCAaatctcgcccgaactttaaattctgaa
gaacgtcaaaatacactaaaatttcaATATGTTTCGACGAtaattgtagc
tcaactgaagttgagaatatatGCCATAATAAACTGTAAAATAATAACCA
GACAGGTGGCTGAACTAAAATACTGCAAATCATCCCCAATCATTGATATT
TCTACCCTTACCGATCAAAATTTAAAGGTTATACCTCAAGGTAATCTCGA
AATTCTAAGGCCCCTAAAAATACTCAaaggtttcactttttgaagatttc
tctctagccctttgggcctTAAACTCAATGGGTCTTCTATAGAAATTTCC
TATGTCTTTGGTATTTCAGAGTGGAGTTGCTGAGGAATTCAACACAACGA
ATGTATTCGGACGGTTTGAATACACTGAGAtacaaattgaagaaaatttc
agaGCTTCCTCTTTATACGCTTGTTCAAAtcgaatttaaaaaagaacttt
ATTTTAAAGATGGAAAGTACATAGCAAAGGTTCTAAACTAGTTCAAACAA
AGCTATATTACTTAACATCGGAACAGTGGCGTATGATCAAAATTTGCAAA
TTAATTTCTGACCCGTGTATTCTCGGTTTGGTCGTTGGGAAATAAACTCT
AGTTTAGACGCCTCAcctttcgccctgcctattctaattgtaagAGTAGG
CACAATTTCTGCTTACCTTAATTCACAactagaataggcagggcgaaaag
ttggccgtctaaactagaggtAATTGAATCTACTCAAAATGGATGCATCG
AAAAGAGATTGAACGAGCTGTTTTCGATCAtgcattttgtatttatctcg
tAAATGTATATTAAAATGAAAGTGGCAAATTAAGCTACAATAATTTTAGA
TTACGTCCCTAAGTTCTTATAGTCCTAAGGTtcaaattttcatgataata
aCTTATTGGTCCCATCAGACATAGCAACACTGTCTATTTCTCCTTAGAAG
ATGATGAACACTAACTAATATTTACGGATTTATTCAATACTATTTATCAA
GTTATTTagttgaaaattatttcttagtATTTTCCTAATCCGTCATTGCC
TCGCAATGCTGATAAATTatatcatggaggtataaagaaacaggagaagt
atgctattgtaaccaagctcaccctacgattaaaaaagttacgatgtatg
tatcggtatgcatgctcataatctcatatatcttgcatttttaatgagct
cttttattcattggtgaaatcttattggctcgttgaagatttaaaaatta
gttgagacgagattcattgtttctgacatcagtgtaagaaaatatttgga
ctaaaaaagcctgtaaacttggcaatctctcgtcaaataataagattttt
cgataaatgttttctttaagatAAACTCTTTTGCTTCATACTTTcttcca
aaattctccagcgactttatgtctacaaattgagtctgaactGAAATTGC
GTGTGCTTTtattaaagaacttttcattttctggcttgagaaaatatctt
ttcaaaacaaaaattgaacggataacgaaatggaacataaacttgtgtcg
tggacgaagttttatttaattttcgtatattaaaaggctagaatcttcaa
ttCTTCAATACTGATGCataattagaatgttcagagcaaacttgagaatt
tcttagaatttcttttgatacattttatgaaagaaatcaaaagactttaa
cgaccaattaccgacacaacagacacattcaactcctgtttttctttata
cgaTTATACCTCTATTATTATATATATACTAATgttatattttgtattta
ttaattaatttatttcaaGTATTGCCTATGGCCTTCTTTAGTCACCATTC
TTGGTTTTAATCGATTCTTATTTCAGCGATCTCTCTCTCTAACCAAAATT
CAGGTTCACAATATAGTAATATTCGAGGTAATATTAGTTATTTGTAACTG
TCTGCATTATAGTGTAAAAATATTCACttaaataccgtaataccgtcgat
aAAAGAAGCC Coding sequence (CDS) from alignment at sc0000174:71301..82160+ >TCONS_00013823 ID=TCONS_00013823|Name=TCONS_00013823|organism=Clytia hemisphaerica|type=CDS|length=4680bp|location=Sequence derived from alignment at sc0000174:71301..82160+ (Clytia hemisphaerica)
TTCAGTACAGATCTTGGAGGAAATGTCGAGAAAGGAGGAAAATGGTCACC
TACATGCAAACCTAGGCGGAAGGTTGCCATTATAGTGCCCTTCCGTAATC
GAACAGaacagttgaaaatatttttgcggcACATGCATCCTTTCTTACAT
CGTCAAGAGTTGCTTTATCAGATCTTTGTTGTTGAGCAGCTTGGGATTGA
CACATTTAATCGTGGAGGTTTGTCAAATATTGGATATGTTGAATCGTTAA
AAATGAATAAAGAATTTGACTGCTTTATTTTCACGGATATTGATCTTTTG
CCTGAAAATGATCACAATTATTATGGCTGCCCACGGTCACCAAGACATAT
GTCAGTTGCCATAGATACGTTTAATTACAAgtTACCATACGGTATCATAT
TTGGAGGTGTTGGTGCTTGGTATAAAGAAGATTTTGAGAAGATCAATGGA
TATTCTATGGCATACTGGGGCTGGGGTGGCGAGGATGATGACTTGTTCTA
TAGAGTTCATCATGCCAAGTTAAAGTTCAACAGAGCGCCTGTAGAAATTG
GGCGCTATAAAATGGTGAAGGTCCATCATTTCCGAAGCTCAAAACCCAAC
CCTATCAGAGTGGAGTTGCTGAGGAATTCAACACAACGAATGTATTCGGA
CGGTTTGAATACACTGAGAtacaaattgaagaaaatttcagaGCTTCCTC
TTTATACGCTTGTTCAAAtcgaatttaaaaaagaactttATTTTAAAGAT
GGAAAGTACATAGCAAAGGTTCTAAACTAGTTCAGTACAGATCTTGGAGG
AAATGTCGAGAAAGGAGGAAAATGGTCACCTACATGCAAACCTAGGCGGA
AGGTTGCCATTATAGTGCCCTTCCGTAATCGAACAGaacagttgaaaata
tttttgcggcACATGCATCCTTTCTTACATCGTCAAGAGTTGCTTTATCA
GATCTTTGTTGTTGAGCAGCTTGGGATTGACACATTTAATCGTGGAGGTT
TGTCAAATATTGGATATGTTGAATCGTTAAAAATGAATAAAGAATTTGAC
TGCTTTATTTTCACGGATATTGATCTTTTGCCTGAAAATGATCACAATTA
TTATGGCTGCCCACGGTCACCAAGACATATGTCAGTTGCCATAGATACGT
TTAATTACAAgtTACCATACGGTATCATATTTGGAGGTGTTGGTGCTTGG
TATAAAGAAGATTTTGAGAAGATCAATGGATATTCTATGGCATACTGGGG
CTGGGGTGGCGAGGATGATGACTTGTTCTATAGAGTTCATCATGCCAAGT
TAAAGTTCAACAGAGCGCCTGTAGAAATTGGGCGCTATAAAATGGTGAAG
GTCCATCATTTCCGAAGCTCAAAACCCAACCCTATCAGAGTGGAGTTGCT
GAGGAATTCAACACAACGAATGTATTCGGACGGTTTGAATACACTGAGAt
acaaattgaagaaaatttcagaGCTTCCTCTTTATACGCTTGTTCAAAtc
gaatttaaaaaagaactttATTTTAAAGATGGAAAGTACATAGCAAAGGT
TCTAAACTAGTTCAGTACAGATCTTGGAGGAAATGTCGAGAAAGGAGGAA
AATGGTCACCTACATGCAAACCTAGGCGGAAGGTTGCCATTATAGTGCCC
TTCCGTAATCGAACAGaacagttgaaaatatttttgcggcACATGCATCC
TTTCTTACATCGTCAAGAGTTGCTTTATCAGATCTTTGTTGTTGAGCAGC
TTGGGATTGACACATTTAATCGTGGAGGTTTGTCAAATATTGGATATGTT
GAATCGTTAAAAATGAATAAAGAATTTGACTGCTTTATTTTCACGGATAT
TGATCTTTTGCCTGAAAATGATCACAATTATTATGGCTGCCCACGGTCAC
CAAGACATATGTCAGTTGCCATAGATACGTTTAATTACAAgtTACCATAC
GGTATCATATTTGGAGGTGTTGGTGCTTGGTATAAAGAAGATTTTGAGAA
GATCAATGGATATTCTATGGCATACTGGGGCTGGGGTGGCGAGGATGATG
ACTTGTTCTATAGAGTTCATCATGCCAAGTTAAAGTTCAACAGAGCGCCT
GTAGAAATTGGGCGCTATAAAATGGTGAAGGTCCATCATTTCCGAAGCTC
AAAACCCAACCCTATCAGAGTGGAGTTGCTGAGGAATTCAACACAACGAA
TGTATTCGGACGGTTTGAATACACTGAGAtacaaattgaagaaaatttca
gaGCTTCCTCTTTATACGCTTGTTCAAAtcgaatttaaaaaagaactttA
TTTTAAAGATGGAAAGTACATAGCAAAGGTTCTAAACTAGTTCAGTACAG
ATCTTGGAGGAAATGTCGAGAAAGGAGGAAAATGGTCACCTACATGCAAA
CCTAGGCGGAAGGTTGCCATTATAGTGCCCTTCCGTAATCGAACAGaaca
gttgaaaatatttttgcggcACATGCATCCTTTCTTACATCGTCAAGAGT
TGCTTTATCAGATCTTTGTTGTTGAGCAGCTTGGGATTGACACATTTAAT
CGTGGAGGTTTGTCAAATATTGGATATGTTGAATCGTTAAAAATGAATAA
AGAATTTGACTGCTTTATTTTCACGGATATTGATCTTTTGCCTGAAAATG
ATCACAATTATTATGGCTGCCCACGGTCACCAAGACATATGTCAGTTGCC
ATAGATACGTTTAATTACAAgtTACCATACGGTATCATATTTGGAGGTGT
TGGTGCTTGGTATAAAGAAGATTTTGAGAAGATCAATGGATATTCTATGG
CATACTGGGGCTGGGGTGGCGAGGATGATGACTTGTTCTATAGAGTTCAT
CATGCCAAGTTAAAGTTCAACAGAGCGCCTGTAGAAATTGGGCGCTATAA
AATGGTGAAGGTCCATCATTTCCGAAGCTCAAAACCCAACCCTATCAGAG
TGGAGTTGCTGAGGAATTCAACACAACGAATGTATTCGGACGGTTTGAAT
ACACTGAGAtacaaattgaagaaaatttcagaGCTTCCTCTTTATACGCT
TGTTCAAAtcgaatttaaaaaagaactttATTTTAAAGATGGAAAGTACA
TAGCAAAGGTTCTAAACTAGTTCAGTACAGATCTTGGAGGAAATGTCGAG
AAAGGAGGAAAATGGTCACCTACATGCAAACCTAGGCGGAAGGTTGCCAT
TATAGTGCCCTTCCGTAATCGAACAGaacagttgaaaatatttttgcggc
ACATGCATCCTTTCTTACATCGTCAAGAGTTGCTTTATCAGATCTTTGTT
GTTGAGCAGCTTGGGATTGACACATTTAATCGTGGAGGTTTGTCAAATAT
TGGATATGTTGAATCGTTAAAAATGAATAAAGAATTTGACTGCTTTATTT
TCACGGATATTGATCTTTTGCCTGAAAATGATCACAATTATTATGGCTGC
CCACGGTCACCAAGACATATGTCAGTTGCCATAGATACGTTTAATTACAA
gtTACCATACGGTATCATATTTGGAGGTGTTGGTGCTTGGTATAAAGAAG
ATTTTGAGAAGATCAATGGATATTCTATGGCATACTGGGGCTGGGGTGGC
GAGGATGATGACTTGTTCTATAGAGTTCATCATGCCAAGTTAAAGTTCAA
CAGAGCGCCTGTAGAAATTGGGCGCTATAAAATGGTGAAGGTCCATCATT
TCCGAAGCTCAAAACCCAACCCTATCAGAGTGGAGTTGCTGAGGAATTCA
ACACAACGAATGTATTCGGACGGTTTGAATACACTGAGAtacaaattgaa
gaaaatttcagaGCTTCCTCTTTATACGCTTGTTCAAAtcgaatttaaaa
aagaactttATTTTAAAGATGGAAAGTACATAGCAAAGGTTCTAAACTAG
TTCAGTACAGATCTTGGAGGAAATGTCGAGAAAGGAGGAAAATGGTCACC
TACATGCAAACCTAGGCGGAAGGTTGCCATTATAGTGCCCTTCCGTAATC
GAACAGaacagttgaaaatatttttgcggcACATGCATCCTTTCTTACAT
CGTCAAGAGTTGCTTTATCAGATCTTTGTTGTTGAGCAGCTTGGGATTGA
CACATTTAATCGTGGAGGTTTGTCAAATATTGGATATGTTGAATCGTTAA
AAATGAATAAAGAATTTGACTGCTTTATTTTCACGGATATTGATCTTTTG
CCTGAAAATGATCACAATTATTATGGCTGCCCACGGTCACCAAGACATAT
GTCAGTTGCCATAGATACGTTTAATTACAAgtTACCATACGGTATCATAT
TTGGAGGTGTTGGTGCTTGGTATAAAGAAGATTTTGAGAAGATCAATGGA
TATTCTATGGCATACTGGGGCTGGGGTGGCGAGGATGATGACTTGTTCTA
TAGAGTTCATCATGCCAAGTTAAAGTTCAACAGAGCGCCTGTAGAAATTG
GGCGCTATAAAATGGTGAAGGTCCATCATTTCCGAAGCTCAAAACCCAAC
CCTATCAGAGTGGAGTTGCTGAGGAATTCAACACAACGAATGTATTCGGA
CGGTTTGAATACACTGAGAtacaaattgaagaaaatttcagaGCTTCCTC
TTTATACGCTTGTTCAAAtcgaatttaaaaaagaactttATTTTAAAGAT
GGAAAGTACATAGCAAAGGTTCTAAACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013823-exon-sc0000174-1491911889:71301..71373 | TCONS_00013823-exon-sc0000174-1491911889:71301..71373 | Clytia hemisphaerica | exon |
| TCONS_00013823-exon-sc0000174-1510915933:71301..71373 | TCONS_00013823-exon-sc0000174-1510915933:71301..71373 | Clytia hemisphaerica | exon |
| TCONS_00013823-exon-sc0000174-1575043694:71301..71373 | TCONS_00013823-exon-sc0000174-1575043694:71301..71373 | Clytia hemisphaerica | exon |
| TCONS_00013823-exon-sc0000174-1491911889:76510..76626 | TCONS_00013823-exon-sc0000174-1491911889:76510..76626 | Clytia hemisphaerica | exon |
| TCONS_00013823-exon-sc0000174-1510915933:76510..76626 | TCONS_00013823-exon-sc0000174-1510915933:76510..76626 | Clytia hemisphaerica | exon |
| TCONS_00013823-exon-sc0000174-1575043694:76510..76626 | TCONS_00013823-exon-sc0000174-1575043694:76510..76626 | Clytia hemisphaerica | exon |
| TCONS_00013823-exon-sc0000174-1491911889:78096..78286 | TCONS_00013823-exon-sc0000174-1491911889:78096..78286 | Clytia hemisphaerica | exon |
| TCONS_00013823-exon-sc0000174-1510915933:78096..78286 | TCONS_00013823-exon-sc0000174-1510915933:78096..78286 | Clytia hemisphaerica | exon |
| TCONS_00013823-exon-sc0000174-1575043694:78096..78286 | TCONS_00013823-exon-sc0000174-1575043694:78096..78286 | Clytia hemisphaerica | exon |
| TCONS_00013823-exon-sc0000174-1491911889:78609..78731 | TCONS_00013823-exon-sc0000174-1491911889:78609..78731 | Clytia hemisphaerica | exon |
| TCONS_00013823-exon-sc0000174-1510915933:78609..78731 | TCONS_00013823-exon-sc0000174-1510915933:78609..78731 | Clytia hemisphaerica | exon |
| TCONS_00013823-exon-sc0000174-1575043694:78609..78731 | TCONS_00013823-exon-sc0000174-1575043694:78609..78731 | Clytia hemisphaerica | exon |
| TCONS_00013823-exon-sc0000174-1491911889:79299..79403 | TCONS_00013823-exon-sc0000174-1491911889:79299..79403 | Clytia hemisphaerica | exon |
| TCONS_00013823-exon-sc0000174-1510915933:79299..79403 | TCONS_00013823-exon-sc0000174-1510915933:79299..79403 | Clytia hemisphaerica | exon |
| TCONS_00013823-exon-sc0000174-1575043694:79299..79403 | TCONS_00013823-exon-sc0000174-1575043694:79299..79403 | Clytia hemisphaerica | exon |
| TCONS_00013823-exon-sc0000174-1491911889:80470..82160 | TCONS_00013823-exon-sc0000174-1491911889:80470..82160 | Clytia hemisphaerica | exon |
| TCONS_00013823-exon-sc0000174-1510915933:80470..82160 | TCONS_00013823-exon-sc0000174-1510915933:80470..82160 | Clytia hemisphaerica | exon |
| TCONS_00013823-exon-sc0000174-1575043694:80470..82160 | TCONS_00013823-exon-sc0000174-1575043694:80470..82160 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000174 | supercontig | sc0000174:71301..82160 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016757 | transferase activity, transferring glycosyl groups |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0005975 |
carbohydrate metabolic process |
| molecular_function |
GO:0016757 |
transferase activity, transferring glycosyl groups |
Blast
BLAST of TCONS_00013823 vs. Swiss-Prot (Human)
Match: B4GT2 (Beta-1,4-galactosyltransferase 2 OS=Homo sapiens GN=B4GALT2 PE=1 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 3.595e-67 Identity = 101/237 (42.62%), Postives = 157/237 (66.24%), Query Frame = 2
Query: 26 VEKGGKWSPT-CKPRRKVAIIVPFRNRTEQLKIFLRHMHPFLHRQELLYQIFVVEQLGIDTFNRGGLSNIGYVESLKMNKEFDCFIFTDIDLLPENDHNYYGCPRSPRHMSVAIDTFNYKLPYGIIFGGVGAWYKEDFEKINGYSMAYWGWGGEDDDLFYRVHHAKLKFNRAPVEIGRYKMVKVHHFRSSKPNPIRVELLRNSTQRMYSDGLNTLRYKLKKISELPLYTLVQIEFKK 733
V GG+++P C P + VA+I+PFR+R L+ +L ++HP L RQ L Y ++V+ Q G DTFNR L N+G++E+LK + +DCFIF+D+DL+P +D N Y C PRH ++A+D F ++LPY FGGV K F +ING+ YWGWGGEDDD+F R+ +K +R + IGRY+M+K + ++PNP R ++N+ M DG+ ++RY++ ++S PL+T + ++ +
Sbjct: 128 VLMGGRYTPPDCTPAQTVAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGVYVINQHGEDTFNRAKLLNVGFLEALKEDAAYDCFIFSDVDLVPMDDRNLYRCGDQPRHFAIAMDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPNEYWGWGGEDDDIFNRISLTGMKISRPDIRIGRYRMIKHDRDKHNEPNPQRFTKIQNTKLTMKRDGIGSVRYQVLEVSRQPLFTNITVDIGR 364
The following BLAST results are available for this feature:
|
