TCONS_00013823 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013823
Unique NameTCONS_00013823
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2300

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013823 ID=TCONS_00013823|Name=TCONS_00013823|organism=Clytia hemisphaerica|type=transcript|length=2300bp
CTTCAGTACAGATCTTGGAGGAAATGTCGAGAAAGGAGGAAAATGGTCAC
CTACATGCAAACCTAGGCGGAAGGTTGCCATTATAGTGCCCTTCCGTAAT
CGAACAGaacagttgaaaatatttttgcggcACATGCATCCTTTCTTACA
TCGTCAAGAGTTGCTTTATCAGATCTTTGTTGTTGAGCAGCTTGGGATTG
ACACATTTAATCGTGGAGGTTTGTCAAATATTGGATATGTTGAATCGTTA
AAAATGAATAAAGAATTTGACTGCTTTATTTTCACGGATATTGATCTTTT
GCCTGAAAATGATCACAATTATTATGGCTGCCCACGGTCACCAAGACATA
TGTCAGTTGCCATAGATACGTTTAATTACAAgtTACCATACGGTATCATA
TTTGGAGGTGTTGGTGCTTGGTATAAAGAAGATTTTGAGAAGATCAATGG
ATATTCTATGGCATACTGGGGCTGGGGTGGCGAGGATGATGACTTGTTCT
ATAGAGTTCATCATGCCAAGTTAAAGTTCAACAGAGCGCCTGTAGAAATT
GGGCGCTATAAAATGGTGAAGGTCCATCATTTCCGAAGCTCAAAACCCAA
CCCTATCAGAGTGGAGTTGCTGAGGAATTCAACACAACGAATGTATTCGG
ACGGTTTGAATACACTGAGAtacaaattgaagaaaatttcagaGCTTCCT
CTTTATACGCTTGTTCAAAtcgaatttaaaaaagaactttATTTTAAAGA
TGGAAAGTACATAGCAAAGGTTCTAAACTAGTTCAAACAAAGCTATATTA
CTTAACATCGGAACAGTGGCGTATGATCAAAATTTGCAAATTAATTTCTG
ACCCGTGTATTCTCGGTTTGGTCGTTGGGAAATAAACTCTAGTTTAGACG
CCTCAcctttcgccctgcctattctaattgtaagAGTAGGCACAATTTCT
GCTTACCTTAATTCACAactagaataggcagggcgaaaagttggccgtct
aaactagaggtAATTGAATCTACTCAAAATGGATGCATCGAAAAGAGATT
GAACGAGCTGTTTTCGATCAtgcattttgtatttatctcgtAAATGTATA
TTAAAATGAAAGTGGCAAATTAAGCTACAATAATTTTAGATTACGTCCCT
AAGTTCTTATAGTCCTAAGGTtcaaattttcatgataataaCTTATTGGT
CCCATCAGACATAGCAACACTGTCTATTTCTCCTTAGAAGATGATGAACA
CTAACTAATATTTACGGATTTATTCAATACTATTTATCAAGTTATTTagt
tgaaaattatttcttagtATTTTCCTAATCCGTCATTGCCTCGCAATGCT
GATAAATTatatcatggaggtataaagaaacaggagaagtatgctattgt
aaccaagctcaccctacgattaaaaaagttacgatgtatgtatcggtatg
catgctcataatctcatatatcttgcatttttaatgagctcttttattca
ttggtgaaatcttattggctcgttgaagatttaaaaattagttgagacga
gattcattgtttctgacatcagtgtaagaaaatatttggactaaaaaagc
ctgtaaacttggcaatctctcgtcaaataataagatttttcgataaatgt
tttctttaagatAAACTCTTTTGCTTCATACTTTcttccaaaattctcca
gcgactttatgtctacaaattgagtctgaactGAAATTGCGTGTGCTTTt
attaaagaacttttcattttctggcttgagaaaatatcttttcaaaacaa
aaattgaacggataacgaaatggaacataaacttgtgtcgtggacgaagt
tttatttaattttcgtatattaaaaggctagaatcttcaattCTTCAATA
CTGATGCataattagaatgttcagagcaaacttgagaatttcttagaatt
tcttttgatacattttatgaaagaaatcaaaagactttaacgaccaatta
ccgacacaacagacacattcaactcctgtttttctttatacgaTTATACC
TCTATTATTATATATATACTAATgttatattttgtatttattaattaatt
tatttcaaGTATTGCCTATGGCCTTCTTTAGTCACCATTCTTGGTTTTAA
TCGATTCTTATTTCAGCGATCTCTCTCTCTAACCAAAATTCAGGTTCACA
ATATAGTAATATTCGAGGTAATATTAGTTATTTGTAACTGTCTGCATTAT
AGTGTAAAAATATTCACttaaataccgtaataccgtcgataAAAGAAGCC
Run BLAST on NCBI

protein sequence of TCONS_00013823-protein

>TCONS_00013823-protein ID=TCONS_00013823-protein|Name=TCONS_00013823-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
FSTDLGGNVEKGGKWSPTCKPRRKVAIIVPFRNRTEQLKIFLRHMHPFLH
RQELLYQIFVVEQLGIDTFNRGGLSNIGYVESLKMNKEFDCFIFTDIDLL
PENDHNYYGCPRSPRHMSVAIDTFNYKLPYGIIFGGVGAWYKEDFEKING
YSMAYWGWGGEDDDLFYRVHHAKLKFNRAPVEIGRYKMVKVHHFRSSKPN
PIRVELLRNSTQRMYSDGLNTLRYKLKKISELPLYTLVQIEFKKELYFKD
GKYIAKVLN
Run BLAST on NCBI

transcript from alignment at sc0000174:71301..82160+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013823 ID=TCONS_00013823|Name=TCONS_00013823|organism=Clytia hemisphaerica|type=transcript|length=10860bp|location=Sequence derived from alignment at sc0000174:71301..82160+ (Clytia hemisphaerica)
CTTCAGTACAGATCTTGGAGGAAATGTCGAGAAAGGAGGAAAATGGTCAC
CTACATGCAAACCTAGGCGGAAGGTAAAATATCTTAGGTGTGGGGACACT
GGACGTCAAAAAGGCTCAAAGTtatcttattttatttttaaggctttact
tAAAATGTAGACTAAGAAAAAAgtccaaagccgaagaaaattcgcaaaca
ggAGTTTTTGCCGAAaggagtttacagtcggtagagttgccagtcttctT
CGAAACTCTACCGCCGATTATTTTTTCCGTATACTACCATAACGCCatca
taccgccatattttcccgcctttactataattgtaacggacgataacatc
gtttACTTAAAATGAAGGTattgaaatattgaaatgaaGGTAAAATATAT
TAAGCATCTTTCAGAGCTTAATTCGGTCGTGCGGGAATGGTGATTTCATT
ATTTCCACTTTATTACAATGAATATTTAGATTCAGGCTATATCATTTTTG
GATTCTGATATCCAAAAGTGTAAGTCTAAATTAGATTAAATTAGATTTCA
TTAAACACAAAAACTCAAAGTAAAAAATCCACATTCCAGAAATAAATTAC
ACcacttaaaaatataatttcaaaaattaaatttttggagTAAAATTTTA
CAATGCATTCCCATTGGTGAATTTATTTACGGTTCCGAAAGACATGTCAA
GAGAAagtcgttctgtaaattactaatttgaaagattttcgcGTGCTAAT
AAAAATGGTAGCTATTTCCGAACTCATCACACGTCTTTCAAGCTCTCTAG
TATATTCTCTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTTC
AAGCTCTCTAGTATATTTGGGAGAAATAAGATCAAATATTAAGTTATTTT
TGGAGTAATAACACAGAAGCGGTCAAGTTATTCTGTATCACAATGCACAA
ACTGACAGATGGGTGCCGTAAAACATTGGTTGTAGACAACATCGATGGAA
GTAATTCAAGTTTTGCCCACAATTTTTATCAACAAAGATTAAAGGTTCGC
TCTCGACATCTTAAAGAGAAACCAGCAAGTTAGCCAAACCCTGGCAAATC
CGATCGATCAGCATTATCAAGATCCTACATATCAATTACTGCTACCATTG
GACCAAAAATGGATTCCCTCGATCAAAAGAGAAAACAAGAGACAAACAAG
GAATTGCAAGCTAAGTATTTCTGATTCTTCTTATTTTCGTTATATAACTG
AGCGTTCTCTTGCTCCGTTAAGTTTGGATAGACAATATCAACAAAGTTTG
TGTTAGGAGATATAGCTCGCTTGGGAAAACTCATAATAACAAAAACTCTA
CAGGgaagattttttttgtcatctaaATCAATCTCAAATGCCTTGGAGGA
ACTTATGTTCTTGCAGGAAATCAGTCATCAGTGTTAAACTTAATGGGGAT
TTCTTTTATCAAAGTTGTTTTGCATTGTGACAAGGAAATATAATAGTGAC
ATTTTAAATAATGATGTCAGAAATTTATGGCCTCGTTAATAAGGAGATAC
AATTATTAGCAAACTGCTTTTACACTTCGAGCTTTTGAATTCAAATTAAC
AAAGGAACAGTGCTCTCTCGTACATAGATAATATGGCATCACCAAGAATT
GGTAAGGTAGAAGCAATAAGAAAAGGTACAATATCTGGCAAACCTCGTTt
acaagaaatataatttttgagaatAACATGGATTGCTAGAAAGCTTAaaa
ggaatttaattttttttttcttcatatttttggaaataccTAAATCACGT
CATTTGTTtacagaaaatcaaatttattttaatgCAATGCGTACGTTGTT
AGGGGAATAAGTCGAGCCGTCTGTTTGACGTTAAAGTGTtcagaaagaaa
ttggaaaaGTTCTTGCTTTTCTTGATAGGGAGTGTAGCCATAACTTTCTA
TCCATAAATGGTTTAACCAAGAGACAGATATcattaaaaagccatttttg
aGGGAGCAAAACTATGTTTGAACTTTCCCAAAGAAGTGAGTGAAAATGAG
TTTAGAgtcgatttaaaaaagaaaaaatttttaatggAATAGgctgaaaa
cctcaaatttaGTCCACGTAAAACTGAATCCTTCCTGAAatagaaaaatg
attttacgatcttcaaattttttctcGTTTGCGAAATATCAAGCTTTAAA
GTCGATGTTTTAAGGTTTATCAcagtttatcaagagttattgatttgatt
cttataaagtaggtgCTTATAATAAATCAGATATGCTGACATTGTGCACA
attatttattaatttgatGTTCGATCACATTAGTTTTTAGCGATATTCTT
TACAATATTAGAGAATGATTAAATGTTTATTACACCGTGTCAACCACTTT
CGGTTTCTAAATTTTATTCCGTACCGCCAAAGCCagtatcgtaatacttt
cgctaggtgGCGAAATTAAAAATGGACAGATTGGACAAAAGTATATACCG
AAGTAAACTCGTTGCCTTCTCAAGAAAAGCACGTAACTTTCATTCTAATG
TTTCAATTTGAATCTGGGAAGTCCTTTACGTTGTTTGAAGCTTTACGAAC
TATTTATCATCCTATTTCGGGTTACGCGATCGGGTCATTTTCAACTGTAA
GGCACTATTCAAGGGTTTTAAATGCTCCCCGTCTTCTACCCCCAAAAGGA
TTAAGGGTTTAGAGGTGAAGATTTtgcgtaaaatattttttttcttgatt
atttCCATTTTAATCTAAAGTGGTAGACGGATGTCTGACAGGGAAGGTCA
TTAGGTAAATGTTGTAAGGATGTTTTCTGATATCTGCCTGGTTAAGGGGC
TAGAAAGGAATCTCCAAATGGCAAAgatggaaattattttttttttaata
ttaattTTTAGATGGACTACAAAATCAAAGCGTAATCAGATGTTAAGACG
TTGAAAAATCGAAATCATACAGCTCCGTTAGAGACGACACAAAGAAAGTG
TTTGATAAAACGAGAAAAGGATGTGTTGTTCACAATTTGAGGTCAGGTGG
TGCTTCAGCTGCGGGTAATCCTGGAGTGTCGTAGAGGCTCATTAAAGTCA
CAGTCGCTGGATATTGGCGAAAATTTAAANATCAGATGTTAAGACGTTGA
AAAATCGAAATCATACAGCTCATACAGACACAAAGAAAGTGTTTGATAAA
ACGAGAAAAGGATGTGTTGTTCACAATTTGAGGTCAGGTGGTGCTTCAGC
TGTGGGTAATCCTGGAGTGTCGGAGAGGCTCATTAAAGTCACAGTCGGTA
GATATTGgcgaaaatttaaagaatttattATTTATCTCTAGGTCTAATTT
GTAGTAAGCTTCCAGCCTTATCACTGTCTCATGCTTTTAGTCGACAGCCT
TGAAACGCCTAACTACTAAACTAAATAAAAGGGTACAAGCCTGTCTCAAC
AAATTATCTCGTTTTcactttcttcattttcttagaTTTTGCTTTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAGGCCCTTACGGTTTCC
TCTACGACAGCCCAGCTAAAATTTGAGACAGCCTGGGCACCCAATTTTGA
CCACCGGGGTCTGGAGGTTTTTGTCCGGGGGGACTTGATCAATCCGTTGT
CTAAGTCAACAAGATAGCATGAAGATAACGGCTTCTATAAAAAAGCTCAA
AGTAAGTGaatttgatataaaaaaaaaaaatttaaaagaagtgCCTAAGA
GGACCTCAATTTTTTAATATCGGTTATTGCTGTAAAGTAGGTGGTATTCA
TTCCATTTTGAAAGTAATATTTTAATTGGATTGATCCCACAGGGATTGGT
AAAAGGAAAGTAGCGTTTTATATCAAAGGGAAAGTAgtgtattttatcaa
aattaggTTTATTTAGGACCTCAAGTATATTGACATTGATAACTGCTGTC
TAACTTTTAtcgataacttcaattttgacGGTAGGCAAAGTANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCTTAGATTTTGCTTTTAAGGCCTTTAACA
GTACTTGCGTTTTTTCTAAAggattagtaaataaataaggttattttcgg
ttcaacgattagaaaataactttaaaataatGTGACTCGTTTCTAAGCTT
TTAGTTTGTTTTATGATTCTGATGATAACACAAACTTTGTCAGTCTACCA
ggtcaaaaattaaaatgaaaaaatgaaaaaataaaataacatgAAGATAA
AAATATACCATATTTTCTCTATGGATTATTATACGGGTCCCCTCCAGTCG
TCATTAATATTTACCCCACCCCCTGAATCCTAATTTATCGTATAATTCTG
TATTTTCAGGTTGCCATTATAGTGCCCTTCCGTAATCGAACAGaacagtt
gaaaatatttttgcggcACATGCATCCTTTCTTACATCGTCAAGAGTTGC
TTTATCAGATCTTTGTTGTTGAGCAGGTATATGAAGGttctgtttgtttt
attgttcaGACATTTCTCActttattttttacaaagtgAAATCAAATATT
ACACAAACAGAGCATTGTAGCCACATAGGGAACTAGAGGGTAATAATCTC
TTTTGGGttttaaaaaatctctttttggttttcaaataatattctttttt
tgcattttccacTCGAATTCTCGTACATTTATTTGTTTTGGGTGCCTTCT
CCAGCAATATTCTGAGAAATGCTTCCTAGTTTTTAaagccaaaccatggt
tggtcCTCACGTTATGTCATTAAACTTCAGCCCCTCCCCCATTATCAAAA
TGCTTTCTACGGTGCTGCAAACATTTGTGTAGCGAGCACCTTACCAAAAA
CTGGGATTTTTCAtttcgtttcttagtgagtttcactttgacgatttttg
aaaattagaagcCTTTctagtgctttgacgcaaatacACCGTTTAATAGT
GTCGACTGCACAcgcgtccaaacaattttccattgttttgattttaacgt
CCGCTCTTTCCCGttaaaaaacggtaggtaaaattCCGGTTCTCGTAAGG
AAACCTatcagagaaatggtaggtaaagaactccttttaatcataacttc
ttttcctcttgatgaatttttgtgaaattttcaggagagatccataaaac
tatcattaatatcatgttcaaatatctaaatcattctccttaaaggaaag
aaaaaattgacaatatttacattcctctaaccttccacattactaaagtg
cgcatttttacctaccgtttttacGGTGGAACACGGAAgagatagcgaga
ctcctaaacggtgtattgtatattttttcactACTGAACactttatgacg
taatcttttttccaagcaaaaaggattgaagtcaaaaagtgcgatcgaag
cgcgcgaaagtggagaccggcctttaaagTGATGTCCAGGAGCAGCCAGC
AgcggaatttttcaaaatatctgttcttctTTTCCAAGAGAGGAAATTTT
GGAGTAAAATTCAGAAGCGATCTttcaagcacttcaaaaatcgaGCGTGA
AAGGAGTGTGAAAATATCTGTTCCGAAAATCCAGGagcaatgaattagaa
aaaaaaaatcatttacttTTCCAGCAGGCCGCAGACGTGCCCTTCCTAGA
GAATTCAGGACTAAGTTTAAACGAAGGAAGAGTAGATGCTGTTTTTCCAA
AAACATCTCGGcgttcaattaaattacataaGAACAGATGAATTTTTCCA
GTAATCATGATTTAACCTCAGAACAGAAGCAAATTTCCAGGAGCATGATT
TGTTTCAATAACAGATAAGTTTATCGTTTTATCTATGGAGCCTGGCAAGA
AAATAACAGATAATTTTTTCCAGGGAAATTTACCTTTCAGAGCAgataat
ttataatttctaaaatttctaaatttgttaTTTGTATCTTTTAAGCTTGG
GATTGACACATTTAATCGTGGAGGTTTGTCAAATATTGGATATGTTGAAT
CGTTAAAAATGAATAAAGAATTTGACTGCTTTATTTTCACGGATATTGAT
CTTTTGCCTGAAAATGATCACAATTATTATGGCTGCCCACGGTCACCAAG
ACATATGTCAGTTGCCATAGATACGTTTAATTACAAGTAAGTTTGCTGCG
ATAGTGATATTCATGTTTAGGTGCCAAAGCTTAAACGTTTTCTATTATAG
CCATGAAATTAGGCGAGGTGGACTAAAAAGGTTTATGGTTATAAACTAAC
ActaattttaaattcaatgatCGTAGTAATGCATTTATCTCCACGTTCCG
TAACATCGAATTACCTTATACCTTTTTACGTCGGCCCTAATATAGCGCGC
CATTATGCTGGGCCTTATTACGCGCCAGTGACGAAAAAATAATGCCAACG
GCGGCAgtcgtaaaaagggccaatcagGTAGATCTTTGTtactcttcaaa
attttcaggtTACCATACGGTATCATATTTGGAGGTGTTGGTGCTTGGTA
TAAAGAAGATTTTGAGAAGATCAATGGATATTCTATGGCATACTGGGGCT
GGGGTGGCGAGGATGATGACTTGTTCTATAGGTTTGTGGATTTTCTACAG
ATCAAATACTTATAGTATTGGATAAATTAAGTGCCACGTTCCTTTTTTTT
CTAAgctttttaggaaaatttctaGTTCAAACTtgaaaggcttatatctc
cggatctagaagaaGTTAGAAGCTCAttcatagctcgttggatagctaag
agtctcttctttctttgcTGCGTGGACCTGACTGAATGACAAAAAGGTGT
CCAGTGGTAGAACTTCAAATCTGTTCGCTAGAGAATAGAATaaagtaaag
cagggccaaatttggggGTTCTTgcatcactcgttgaccaacaATGgtaa
aaaacggtcaaaatatcaaaaaagttgaatttttacatttttttgacttt
ttgacttaaaaactttttgacTAAACATGAAGCTCGTACGAGTTAGAGAA
AACGAGTTAGAGGCAAAAATCACTACTCTTTCATTGAAAAGATCTGCACC
TTGCCTCATAATTTTAGGCTCCCAGTCCTGCCTAACGCTTCAAAAGCCTC
GATTACTTTATTCTCAATCCAACCTGTTAACTTGTATCTTTCTTCAAGAG
TTCATCATGCCAAGTTAAAGTTCAACAGAGCGCCTGTAGAAATTGGGCGC
TATAAAATGGTGAAGGTCCATCATTTCCGAAGCTCAAAACCCAACCCTAT
CAGGTGAGAGCTATTTATTGATTATTGAAACTTGGTTCTCTTCATTTCTT
CAAACATTTTGAAGCCTCGATTGTAAACCCTAGGTTGATGGGTACTGGGA
ATAAGGAAAATCTCATTGTAAACCCTAGGTTGATGGGTACTGGGAATAAG
GAAAATCTCATTTTAAATCCAGGTTGAAGGGTACTGGGAATAAGGAAAAT
CTCATTGTAAATCCAGAGTTATAGGCGTTCGGAATATCAGAATCcaagta
gcaaaattccatgatggtgatattcttagcattatttttaatttttggcc
attttcatcatgataaataaagtgtattcttattaaaaaaagcgcgtaag
gcttttcttttaaattgaaaacgCGGTGTGCAAACGCTACTTCGACAGGC
ACCCGCAATTGACACCGCTTGCAATTGAAAAACATACATTCGGTgattct
acaatcatggacaaaacatttgagacaaaagggattTCCTTGCGAAGCTT
TAAACCGCACCGcacaaatgattttaaagcGTGTTAAAGTACGTTTGAAA
AGTAGAGTTTTAGTTCTGAGCTTTAACAcgagacttaaaacttaggacct
taggatcttaagattttaaagctcaaatttgctccaataaggcttggaat
acagcctagaagccaccaaacccctccagaatcgaaatattcgatgaaag
aAAGTGCGAGTGCTGAAAAACCAaatctcgcccgaactttaaattctgaa
gaacgtcaaaatacactaaaatttcaATATGTTTCGACGAtaattgtagc
tcaactgaagttgagaatatatGCCATAATAAACTGTAAAATAATAACCA
GACAGGTGGCTGAACTAAAATACTGCAAATCATCCCCAATCATTGATATT
TCTACCCTTACCGATCAAAATTTAAAGGTTATACCTCAAGGTAATCTCGA
AATTCTAAGGCCCCTAAAAATACTCAaaggtttcactttttgaagatttc
tctctagccctttgggcctTAAACTCAATGGGTCTTCTATAGAAATTTCC
TATGTCTTTGGTATTTCAGAGTGGAGTTGCTGAGGAATTCAACACAACGA
ATGTATTCGGACGGTTTGAATACACTGAGAtacaaattgaagaaaatttc
agaGCTTCCTCTTTATACGCTTGTTCAAAtcgaatttaaaaaagaacttt
ATTTTAAAGATGGAAAGTACATAGCAAAGGTTCTAAACTAGTTCAAACAA
AGCTATATTACTTAACATCGGAACAGTGGCGTATGATCAAAATTTGCAAA
TTAATTTCTGACCCGTGTATTCTCGGTTTGGTCGTTGGGAAATAAACTCT
AGTTTAGACGCCTCAcctttcgccctgcctattctaattgtaagAGTAGG
CACAATTTCTGCTTACCTTAATTCACAactagaataggcagggcgaaaag
ttggccgtctaaactagaggtAATTGAATCTACTCAAAATGGATGCATCG
AAAAGAGATTGAACGAGCTGTTTTCGATCAtgcattttgtatttatctcg
tAAATGTATATTAAAATGAAAGTGGCAAATTAAGCTACAATAATTTTAGA
TTACGTCCCTAAGTTCTTATAGTCCTAAGGTtcaaattttcatgataata
aCTTATTGGTCCCATCAGACATAGCAACACTGTCTATTTCTCCTTAGAAG
ATGATGAACACTAACTAATATTTACGGATTTATTCAATACTATTTATCAA
GTTATTTagttgaaaattatttcttagtATTTTCCTAATCCGTCATTGCC
TCGCAATGCTGATAAATTatatcatggaggtataaagaaacaggagaagt
atgctattgtaaccaagctcaccctacgattaaaaaagttacgatgtatg
tatcggtatgcatgctcataatctcatatatcttgcatttttaatgagct
cttttattcattggtgaaatcttattggctcgttgaagatttaaaaatta
gttgagacgagattcattgtttctgacatcagtgtaagaaaatatttgga
ctaaaaaagcctgtaaacttggcaatctctcgtcaaataataagattttt
cgataaatgttttctttaagatAAACTCTTTTGCTTCATACTTTcttcca
aaattctccagcgactttatgtctacaaattgagtctgaactGAAATTGC
GTGTGCTTTtattaaagaacttttcattttctggcttgagaaaatatctt
ttcaaaacaaaaattgaacggataacgaaatggaacataaacttgtgtcg
tggacgaagttttatttaattttcgtatattaaaaggctagaatcttcaa
ttCTTCAATACTGATGCataattagaatgttcagagcaaacttgagaatt
tcttagaatttcttttgatacattttatgaaagaaatcaaaagactttaa
cgaccaattaccgacacaacagacacattcaactcctgtttttctttata
cgaTTATACCTCTATTATTATATATATACTAATgttatattttgtattta
ttaattaatttatttcaaGTATTGCCTATGGCCTTCTTTAGTCACCATTC
TTGGTTTTAATCGATTCTTATTTCAGCGATCTCTCTCTCTAACCAAAATT
CAGGTTCACAATATAGTAATATTCGAGGTAATATTAGTTATTTGTAACTG
TCTGCATTATAGTGTAAAAATATTCACttaaataccgtaataccgtcgat
aAAAGAAGCC

Coding sequence (CDS) from alignment at sc0000174:71301..82160+

>TCONS_00013823 ID=TCONS_00013823|Name=TCONS_00013823|organism=Clytia hemisphaerica|type=CDS|length=4680bp|location=Sequence derived from alignment at sc0000174:71301..82160+ (Clytia hemisphaerica)
TTCAGTACAGATCTTGGAGGAAATGTCGAGAAAGGAGGAAAATGGTCACC
TACATGCAAACCTAGGCGGAAGGTTGCCATTATAGTGCCCTTCCGTAATC
GAACAGaacagttgaaaatatttttgcggcACATGCATCCTTTCTTACAT
CGTCAAGAGTTGCTTTATCAGATCTTTGTTGTTGAGCAGCTTGGGATTGA
CACATTTAATCGTGGAGGTTTGTCAAATATTGGATATGTTGAATCGTTAA
AAATGAATAAAGAATTTGACTGCTTTATTTTCACGGATATTGATCTTTTG
CCTGAAAATGATCACAATTATTATGGCTGCCCACGGTCACCAAGACATAT
GTCAGTTGCCATAGATACGTTTAATTACAAgtTACCATACGGTATCATAT
TTGGAGGTGTTGGTGCTTGGTATAAAGAAGATTTTGAGAAGATCAATGGA
TATTCTATGGCATACTGGGGCTGGGGTGGCGAGGATGATGACTTGTTCTA
TAGAGTTCATCATGCCAAGTTAAAGTTCAACAGAGCGCCTGTAGAAATTG
GGCGCTATAAAATGGTGAAGGTCCATCATTTCCGAAGCTCAAAACCCAAC
CCTATCAGAGTGGAGTTGCTGAGGAATTCAACACAACGAATGTATTCGGA
CGGTTTGAATACACTGAGAtacaaattgaagaaaatttcagaGCTTCCTC
TTTATACGCTTGTTCAAAtcgaatttaaaaaagaactttATTTTAAAGAT
GGAAAGTACATAGCAAAGGTTCTAAACTAGTTCAGTACAGATCTTGGAGG
AAATGTCGAGAAAGGAGGAAAATGGTCACCTACATGCAAACCTAGGCGGA
AGGTTGCCATTATAGTGCCCTTCCGTAATCGAACAGaacagttgaaaata
tttttgcggcACATGCATCCTTTCTTACATCGTCAAGAGTTGCTTTATCA
GATCTTTGTTGTTGAGCAGCTTGGGATTGACACATTTAATCGTGGAGGTT
TGTCAAATATTGGATATGTTGAATCGTTAAAAATGAATAAAGAATTTGAC
TGCTTTATTTTCACGGATATTGATCTTTTGCCTGAAAATGATCACAATTA
TTATGGCTGCCCACGGTCACCAAGACATATGTCAGTTGCCATAGATACGT
TTAATTACAAgtTACCATACGGTATCATATTTGGAGGTGTTGGTGCTTGG
TATAAAGAAGATTTTGAGAAGATCAATGGATATTCTATGGCATACTGGGG
CTGGGGTGGCGAGGATGATGACTTGTTCTATAGAGTTCATCATGCCAAGT
TAAAGTTCAACAGAGCGCCTGTAGAAATTGGGCGCTATAAAATGGTGAAG
GTCCATCATTTCCGAAGCTCAAAACCCAACCCTATCAGAGTGGAGTTGCT
GAGGAATTCAACACAACGAATGTATTCGGACGGTTTGAATACACTGAGAt
acaaattgaagaaaatttcagaGCTTCCTCTTTATACGCTTGTTCAAAtc
gaatttaaaaaagaactttATTTTAAAGATGGAAAGTACATAGCAAAGGT
TCTAAACTAGTTCAGTACAGATCTTGGAGGAAATGTCGAGAAAGGAGGAA
AATGGTCACCTACATGCAAACCTAGGCGGAAGGTTGCCATTATAGTGCCC
TTCCGTAATCGAACAGaacagttgaaaatatttttgcggcACATGCATCC
TTTCTTACATCGTCAAGAGTTGCTTTATCAGATCTTTGTTGTTGAGCAGC
TTGGGATTGACACATTTAATCGTGGAGGTTTGTCAAATATTGGATATGTT
GAATCGTTAAAAATGAATAAAGAATTTGACTGCTTTATTTTCACGGATAT
TGATCTTTTGCCTGAAAATGATCACAATTATTATGGCTGCCCACGGTCAC
CAAGACATATGTCAGTTGCCATAGATACGTTTAATTACAAgtTACCATAC
GGTATCATATTTGGAGGTGTTGGTGCTTGGTATAAAGAAGATTTTGAGAA
GATCAATGGATATTCTATGGCATACTGGGGCTGGGGTGGCGAGGATGATG
ACTTGTTCTATAGAGTTCATCATGCCAAGTTAAAGTTCAACAGAGCGCCT
GTAGAAATTGGGCGCTATAAAATGGTGAAGGTCCATCATTTCCGAAGCTC
AAAACCCAACCCTATCAGAGTGGAGTTGCTGAGGAATTCAACACAACGAA
TGTATTCGGACGGTTTGAATACACTGAGAtacaaattgaagaaaatttca
gaGCTTCCTCTTTATACGCTTGTTCAAAtcgaatttaaaaaagaactttA
TTTTAAAGATGGAAAGTACATAGCAAAGGTTCTAAACTAGTTCAGTACAG
ATCTTGGAGGAAATGTCGAGAAAGGAGGAAAATGGTCACCTACATGCAAA
CCTAGGCGGAAGGTTGCCATTATAGTGCCCTTCCGTAATCGAACAGaaca
gttgaaaatatttttgcggcACATGCATCCTTTCTTACATCGTCAAGAGT
TGCTTTATCAGATCTTTGTTGTTGAGCAGCTTGGGATTGACACATTTAAT
CGTGGAGGTTTGTCAAATATTGGATATGTTGAATCGTTAAAAATGAATAA
AGAATTTGACTGCTTTATTTTCACGGATATTGATCTTTTGCCTGAAAATG
ATCACAATTATTATGGCTGCCCACGGTCACCAAGACATATGTCAGTTGCC
ATAGATACGTTTAATTACAAgtTACCATACGGTATCATATTTGGAGGTGT
TGGTGCTTGGTATAAAGAAGATTTTGAGAAGATCAATGGATATTCTATGG
CATACTGGGGCTGGGGTGGCGAGGATGATGACTTGTTCTATAGAGTTCAT
CATGCCAAGTTAAAGTTCAACAGAGCGCCTGTAGAAATTGGGCGCTATAA
AATGGTGAAGGTCCATCATTTCCGAAGCTCAAAACCCAACCCTATCAGAG
TGGAGTTGCTGAGGAATTCAACACAACGAATGTATTCGGACGGTTTGAAT
ACACTGAGAtacaaattgaagaaaatttcagaGCTTCCTCTTTATACGCT
TGTTCAAAtcgaatttaaaaaagaactttATTTTAAAGATGGAAAGTACA
TAGCAAAGGTTCTAAACTAGTTCAGTACAGATCTTGGAGGAAATGTCGAG
AAAGGAGGAAAATGGTCACCTACATGCAAACCTAGGCGGAAGGTTGCCAT
TATAGTGCCCTTCCGTAATCGAACAGaacagttgaaaatatttttgcggc
ACATGCATCCTTTCTTACATCGTCAAGAGTTGCTTTATCAGATCTTTGTT
GTTGAGCAGCTTGGGATTGACACATTTAATCGTGGAGGTTTGTCAAATAT
TGGATATGTTGAATCGTTAAAAATGAATAAAGAATTTGACTGCTTTATTT
TCACGGATATTGATCTTTTGCCTGAAAATGATCACAATTATTATGGCTGC
CCACGGTCACCAAGACATATGTCAGTTGCCATAGATACGTTTAATTACAA
gtTACCATACGGTATCATATTTGGAGGTGTTGGTGCTTGGTATAAAGAAG
ATTTTGAGAAGATCAATGGATATTCTATGGCATACTGGGGCTGGGGTGGC
GAGGATGATGACTTGTTCTATAGAGTTCATCATGCCAAGTTAAAGTTCAA
CAGAGCGCCTGTAGAAATTGGGCGCTATAAAATGGTGAAGGTCCATCATT
TCCGAAGCTCAAAACCCAACCCTATCAGAGTGGAGTTGCTGAGGAATTCA
ACACAACGAATGTATTCGGACGGTTTGAATACACTGAGAtacaaattgaa
gaaaatttcagaGCTTCCTCTTTATACGCTTGTTCAAAtcgaatttaaaa
aagaactttATTTTAAAGATGGAAAGTACATAGCAAAGGTTCTAAACTAG
TTCAGTACAGATCTTGGAGGAAATGTCGAGAAAGGAGGAAAATGGTCACC
TACATGCAAACCTAGGCGGAAGGTTGCCATTATAGTGCCCTTCCGTAATC
GAACAGaacagttgaaaatatttttgcggcACATGCATCCTTTCTTACAT
CGTCAAGAGTTGCTTTATCAGATCTTTGTTGTTGAGCAGCTTGGGATTGA
CACATTTAATCGTGGAGGTTTGTCAAATATTGGATATGTTGAATCGTTAA
AAATGAATAAAGAATTTGACTGCTTTATTTTCACGGATATTGATCTTTTG
CCTGAAAATGATCACAATTATTATGGCTGCCCACGGTCACCAAGACATAT
GTCAGTTGCCATAGATACGTTTAATTACAAgtTACCATACGGTATCATAT
TTGGAGGTGTTGGTGCTTGGTATAAAGAAGATTTTGAGAAGATCAATGGA
TATTCTATGGCATACTGGGGCTGGGGTGGCGAGGATGATGACTTGTTCTA
TAGAGTTCATCATGCCAAGTTAAAGTTCAACAGAGCGCCTGTAGAAATTG
GGCGCTATAAAATGGTGAAGGTCCATCATTTCCGAAGCTCAAAACCCAAC
CCTATCAGAGTGGAGTTGCTGAGGAATTCAACACAACGAATGTATTCGGA
CGGTTTGAATACACTGAGAtacaaattgaagaaaatttcagaGCTTCCTC
TTTATACGCTTGTTCAAAtcgaatttaaaaaagaactttATTTTAAAGAT
GGAAAGTACATAGCAAAGGTTCTAAACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007726XLOC_007726Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013823-proteinTCONS_00013823-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013823-exon-sc0000174-1491911889:71301..71373TCONS_00013823-exon-sc0000174-1491911889:71301..71373Clytia hemisphaericaexon
TCONS_00013823-exon-sc0000174-1510915933:71301..71373TCONS_00013823-exon-sc0000174-1510915933:71301..71373Clytia hemisphaericaexon
TCONS_00013823-exon-sc0000174-1575043694:71301..71373TCONS_00013823-exon-sc0000174-1575043694:71301..71373Clytia hemisphaericaexon
TCONS_00013823-exon-sc0000174-1491911889:76510..76626TCONS_00013823-exon-sc0000174-1491911889:76510..76626Clytia hemisphaericaexon
TCONS_00013823-exon-sc0000174-1510915933:76510..76626TCONS_00013823-exon-sc0000174-1510915933:76510..76626Clytia hemisphaericaexon
TCONS_00013823-exon-sc0000174-1575043694:76510..76626TCONS_00013823-exon-sc0000174-1575043694:76510..76626Clytia hemisphaericaexon
TCONS_00013823-exon-sc0000174-1491911889:78096..78286TCONS_00013823-exon-sc0000174-1491911889:78096..78286Clytia hemisphaericaexon
TCONS_00013823-exon-sc0000174-1510915933:78096..78286TCONS_00013823-exon-sc0000174-1510915933:78096..78286Clytia hemisphaericaexon
TCONS_00013823-exon-sc0000174-1575043694:78096..78286TCONS_00013823-exon-sc0000174-1575043694:78096..78286Clytia hemisphaericaexon
TCONS_00013823-exon-sc0000174-1491911889:78609..78731TCONS_00013823-exon-sc0000174-1491911889:78609..78731Clytia hemisphaericaexon
TCONS_00013823-exon-sc0000174-1510915933:78609..78731TCONS_00013823-exon-sc0000174-1510915933:78609..78731Clytia hemisphaericaexon
TCONS_00013823-exon-sc0000174-1575043694:78609..78731TCONS_00013823-exon-sc0000174-1575043694:78609..78731Clytia hemisphaericaexon
TCONS_00013823-exon-sc0000174-1491911889:79299..79403TCONS_00013823-exon-sc0000174-1491911889:79299..79403Clytia hemisphaericaexon
TCONS_00013823-exon-sc0000174-1510915933:79299..79403TCONS_00013823-exon-sc0000174-1510915933:79299..79403Clytia hemisphaericaexon
TCONS_00013823-exon-sc0000174-1575043694:79299..79403TCONS_00013823-exon-sc0000174-1575043694:79299..79403Clytia hemisphaericaexon
TCONS_00013823-exon-sc0000174-1491911889:80470..82160TCONS_00013823-exon-sc0000174-1491911889:80470..82160Clytia hemisphaericaexon
TCONS_00013823-exon-sc0000174-1510915933:80470..82160TCONS_00013823-exon-sc0000174-1510915933:80470..82160Clytia hemisphaericaexon
TCONS_00013823-exon-sc0000174-1575043694:80470..82160TCONS_00013823-exon-sc0000174-1575043694:80470..82160Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000174supercontigsc0000174:71301..82160 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.343637	0	0	0	3.66618	2.2409	0.231557	0	0	0	9.06177	11.9571	0.533514	0	0	0	0	0	0.559161	0	0	0.461143
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003859Galactosyl_T
IPR029044Nucleotide-diphossugar_trans
IPR027995Galactosyl_T_N
IPR027791Galactosyl_T_C
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016757transferase activity, transferring glycosyl groups
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
Blast
[Close]
BLAST of TCONS_00013823 vs. Swiss-Prot (Human)
Match: B4GT2 (Beta-1,4-galactosyltransferase 2 OS=Homo sapiens GN=B4GALT2 PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 3.595e-67
Identity = 101/237 (42.62%), Postives = 157/237 (66.24%), Query Frame = 2 
Query:   26 VEKGGKWSPT-CKPRRKVAIIVPFRNRTEQLKIFLRHMHPFLHRQELLYQIFVVEQLGIDTFNRGGLSNIGYVESLKMNKEFDCFIFTDIDLLPENDHNYYGCPRSPRHMSVAIDTFNYKLPYGIIFGGVGAWYKEDFEKINGYSMAYWGWGGEDDDLFYRVHHAKLKFNRAPVEIGRYKMVKVHHFRSSKPNPIRVELLRNSTQRMYSDGLNTLRYKLKKISELPLYTLVQIEFKK 733
            V  GG+++P  C P + VA+I+PFR+R   L+ +L ++HP L RQ L Y ++V+ Q G DTFNR  L N+G++E+LK +  +DCFIF+D+DL+P +D N Y C   PRH ++A+D F ++LPY   FGGV    K  F +ING+   YWGWGGEDDD+F R+    +K +R  + IGRY+M+K    + ++PNP R   ++N+   M  DG+ ++RY++ ++S  PL+T + ++  +
Sbjct:  128 VLMGGRYTPPDCTPAQTVAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGVYVINQHGEDTFNRAKLLNVGFLEALKEDAAYDCFIFSDVDLVPMDDRNLYRCGDQPRHFAIAMDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPNEYWGWGGEDDDIFNRISLTGMKISRPDIRIGRYRMIKHDRDKHNEPNPQRFTKIQNTKLTMKRDGIGSVRYQVLEVSRQPLFTNITVDIGR 364
The following BLAST results are available for this feature:
BLAST of TCONS_00013823 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B4GT23.595e-6742.62Beta-1,4-galactosyltransferase 2 OS=Homo sapiens G... [more]
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