TCONS_00013817 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013817
Unique NameTCONS_00013817
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length662

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013817 ID=TCONS_00013817|Name=TCONS_00013817|organism=Clytia hemisphaerica|type=transcript|length=662bp
GAAATATTCTAATCTTTTTGTGGTCAATTTTTCCATGCTTTATTAAAATT
TATTAAAGTACATATTGCATGATTGTTATGTACAGCAGTCTCGCTTCTCG
CCAATTTTTTGGAGGAAATTCAAGTCCAAGTTCCCTGacgatgtaaaaaa
aaaactctcCTGTGCATTCAGGACTTTCTTCTTCAATACGGGATGCCTCC
CTAAAGACGTCTTCTTCCCTTAACACGGAAGCTATATCATTGTTCGAGAT
TTGCAGCCCACAATCTTCGAAATCTCTTGTTTCTGGTAGAAAGTAGAGTT
CGTCTGGTACTCCTGCAACTTCACAATTATTTGAATGTCGGATGTAATGG
TTATTCCACTCATCCTTTACCGTATCTaattctttttgtagaaaaccAGA
GTATACTAACCAAATGAAAGCTTTTTGAATCTCGTTATTTGGATTTAAAT
ATCCCTCGTCaactaaatctttaaaatagtcAATGACCCAATTAGTAAAC
CCCCTCCGCTGATGTGACCACCAGTTCTCGATTCTCTGATTTCTTATCGA
CTGACCATATTTGTGTGCATTGGTATCTCCATGAAAGTAACTTTGTATCG
ATGCTGTGATACCATTTTCAGTACCGCAATCTGTATGGACTATTCTTGGG
CATAGGTTCAGG
Run BLAST on NCBI

protein sequence of TCONS_00013817-protein

>TCONS_00013817-protein ID=TCONS_00013817-protein|Name=TCONS_00013817-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
LNLCPRIVHTDCGTENGITASIQSYFHGDTNAHKYGQSIRNQRIENWWSH
QRRGFTNWVIDYFKDLVDEGYLNPNNEIQKAFIWLVYSGFLQKELDTVKD
EWNNHYIRHSNNCEVAGVPDELYFLPETRDFEDCGLQISNNDIASVLREE
DVFREASRIEEESPECTGEFFFYIVRELGLEFPPKNWREARLLYITIMQY
VL
Run BLAST on NCBI

transcript from alignment at sc0000173:424027..424688

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013817 ID=TCONS_00013817|Name=TCONS_00013817|organism=Clytia hemisphaerica|type=transcript|length=662bp|location=Sequence derived from alignment at sc0000173:424027..424688 (Clytia hemisphaerica)
CCTGAACCTATGCCCAAGAATAGTCCATACAGATTGCGGTACTGAAAATG
GTATCACAGCATCGATACAAAGTTACTTTCATGGAGATACCAATGCACAC
AAATATGGTCAGTCGATAAGAAATCAGAGAATCGAGAACTGGTGGTCACA
TCAGCGGAGGGGGTTTACTAATTGGGTCATTgactattttaaagatttag
ttGACGAGGGATATTTAAATCCAAATAACGAGATTCAAAAAGCTTTCATT
TGGTTAGTATACTCTggttttctacaaaaagaattAGATACGGTAAAGGA
TGAGTGGAATAACCATTACATCCGACATTCAAATAATTGTGAAGTTGCAG
GAGTACCAGACGAACTCTACTTTCTACCAGAAACAAGAGATTTCGAAGAT
TGTGGGCTGCAAATCTCGAACAATGATATAGCTTCCGTGTTAAGGGAAGA
AGACGTCTTTAGGGAGGCATCCCGTATTGAAGAAGAAAGTCCTGAATGCA
CAGgagagttttttttttacatcgtCAGGGAACTTGGACTTGAATTTCCT
CCAAAAAATTGGCGAGAAGCGAGACTGCTGTACATAACAATCATGCAATA
TGTACTTTAATAAATTTTAATAAAGCATGGAAAAATTGACCACAAAAAGA
TTAGAATATTTC

Coding sequence (CDS) from alignment at sc0000173:424027..424688

>TCONS_00013817 ID=TCONS_00013817|Name=TCONS_00013817|organism=Clytia hemisphaerica|type=CDS|length=609bp|location=Sequence derived from alignment at sc0000173:424027..424688 (Clytia hemisphaerica)
CTGAACCTATGCCCAAGAATAGTCCATACAGATTGCGGTACTGAAAATGG
TATCACAGCATCGATACAAAGTTACTTTCATGGAGATACCAATGCACACA
AATATGGTCAGTCGATAAGAAATCAGAGAATCGAGAACTGGTGGTCACAT
CAGCGGAGGGGGTTTACTAATTGGGTCATTgactattttaaagatttagt
tGACGAGGGATATTTAAATCCAAATAACGAGATTCAAAAAGCTTTCATTT
GGTTAGTATACTCTggttttctacaaaaagaattAGATACGGTAAAGGAT
GAGTGGAATAACCATTACATCCGACATTCAAATAATTGTGAAGTTGCAGG
AGTACCAGACGAACTCTACTTTCTACCAGAAACAAGAGATTTCGAAGATT
GTGGGCTGCAAATCTCGAACAATGATATAGCTTCCGTGTTAAGGGAAGAA
GACGTCTTTAGGGAGGCATCCCGTATTGAAGAAGAAAGTCCTGAATGCAC
AGgagagttttttttttacatcgtCAGGGAACTTGGACTTGAATTTCCTC
CAAAAAATTGGCGAGAAGCGAGACTGCTGTACATAACAATCATGCAATAT
GTACTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007721XLOC_007721Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013817-proteinTCONS_00013817-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013817-exon-sc0000173-1491911889:424027..424688TCONS_00013817-exon-sc0000173-1491911889:424027..424688Clytia hemisphaericaexon
TCONS_00013817-exon-sc0000173-1510915933:424027..424688TCONS_00013817-exon-sc0000173-1510915933:424027..424688Clytia hemisphaericaexon
TCONS_00013817-exon-sc0000173-1575043694:424027..424688TCONS_00013817-exon-sc0000173-1575043694:424027..424688Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000173supercontigsc0000173:424027..424688 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.156635	0.0763717	0	0	0.211231	0.250376	1.40965	1.41396	0	0.572231	0.476076	0.156477	0	0	0.0444712	0.0954487	0.176378	0.180781	0.749277	0.0871183	0.0757216	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013817 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top