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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013812 ID=TCONS_00013812|Name=TCONS_00013812|organism=Clytia hemisphaerica|type=transcript|length=2827bp
CGCAGATTCTATTTTTCTACAGTATTCTTGTTcgtgaaaatgaaacaaaa
aaatttaacataTATTAcaacgacgttgtttcaacgtttatctaatgttc
acaacgtccatataacgttaaggGAACGTCGAACTAACGTTGAGTGTCAG
TTGGGTTAACAGATATTACAAcgacgttttttcaacgttcatttaatgtt
caaaacgcccatataacgttagatgaacgtcgaactaatgttgtgtgcca
gttgcGTTAACAGATGTTACAACGACGTTCATTATGACTTGCTTGAGAAG
GGGAAAGTATAAATTCAACAACTTCATCATTTCCAATATCActtaaaaaa
gtttccaaagtCATATTTGGTTTCTGAACAAAATGAACCAGTTTACCAGA
ATTTCGATAGCGTCCCTGTAAATAGGTGTTTAGGTTCTCCAAGGGAGCAG
AGTAAAATCTTATTTCATAAGTATTTGTTTCGATTACTTTACTGTTTGGA
TTTCGGATCAAATAGtccaccgatcttgatacagaTAAGTATATTTCGTC
TCTTAGTAAAGTCCAGACTGGTGTGTCATCATTAACTAGGGTTTCAGGCT
TATTAACCTGGAATGGAACTGATTGGCAATTGTGTTTTATCATCATTCGT
TCGACTGGTATGTTGTTGGAAAGCTCTCTAATGCTCTCTTTAATATCCAA
TACGGTTAACGTCtccaagatattcaaaattaaagggTTGTTAGGTAAAA
AAGTACAGCTTAACTTAATTTCAATATCTTGTGGCTGTTTGACGATCAGA
TTTAAAACTTTGGACGGCGAGTGCAAAAGTTGAAATAATTTGACATCGTT
AGACAAATCTGTATTGTTGTGGTATAAGGATTGAAGTTGTGGTAAAATAC
CTTTGATTTTGTAAATATGGTCTTTTAAATCTTGAACGGAACCAAGATTT
TGATCAACATCACAGGATAAGTCAACTTTAAATTGACcagtcaaaaaatt
gattcgaatctcTGGCGATAAATCATATTTTTGACAAATCTCTTCTTCAT
TGGTATGAAGATTTAAAGGGTTGAGAAATAAATTCAAAGCAAGGTCtttg
ttggttttcaaacaatttGCTAATAGTTTCCCCAAATTCTGTTTTGACAG
TTTTATTGTTTGATCATGTTTGGTGTCATGAGTCAAATAAATGACCTCAG
GAACTAGTTCTGGATGTGTTTCTTTTATAAGTCTGCACAAAGTTCGGTAT
TGTTCCTTAGACTCAAGAATACTTAGTGAAGACATAGGGAACTGGCAAAA
TATTGATTCTCCAAAGCCACGATTGATGATAACCAAAGGTTCTTTCTCAT
CATTAGCTGATACATGGTAAAGATGTAACTCAAAAGACGTTTCTGGACTC
GGTATGTATATTTGGTTGTCTCTGTCATTTTCTCTAAGGTCCCTCAAGTT
TTCAGCCAAAACTCGTTGCGCTTGTATCGCCATTAAATCCTGGTTATTGA
TCTTTCTATCGTTCAAAAATAATAGTTGTTTTTCAAGTGGTATATTATAT
TTTCGTGAAATACATTCATGGATAGTCTCACCATTATTTGGATCGATTGA
AAAGgattctttttgaaaatcttcttCATTCTTATACAAAGTGACATCCA
CAGGAATTGAATCTATCCTTTTCATTGCATTGAGCTTATCGTTGTCGGTG
AATGGTTTTAAACGCTGGTTTGCCAACGATGTTGGGAGTAGGAAAACATA
AAATCGATAGAAACCAGCTCTTGTCCCCCAATCTTCAAGAATCACATTAT
CAGCGATAACCAAGTCATTGTAAGCATCATACAAGATCACTTGGTTCTCA
CAAGAAACATCAAATAAATGCTTAATCCAACATTTCATTGTCCAGACATC
AAATGAATACATCTCCAGCAATGGATACGCTACTTTAGTGTATCCTATCG
AATCTAAGCATTCCATTATGTAATGTTCATGGTCTACAGTTTTCGGGGGT
ACAATTTTCATGTTTGTGGTAGAATCGTTTACTTGCGCCTCAATACCAGG
GAAAAATAAACGAATATGTGGAGACAGGAAATATGATCCGTGGGTACAAA
CTCCAAAGTTAAACTCTTCATCGCAATCAAAGTGATTTGGTATCATGAAT
CTTAATTCTAACTTATTGACGAAATCACCGTTTTGGATAATATTGTCAAG
ATAGAGATCTACCAATGACTGTTCTTCAGATAATATCAAATTCTCATATA
CAAAATACATGAAACGTTTGTTTATTCTTCTAAACATGAAatatttgtca
taatttttcaaatctaaGATGGTTGAATTGATGTTCAGTTCTTTCTTAAA
ATCAATGTCTAAAATGTTAGATTGACCAGAATCTTTCAAATGGATTCTTA
TAATTGATAATCGTTGAGCTGCAAATTGTCGCCTCGCTTCAACGATTCTC
GGATCAATAGACGTATCTGTTATTTTAAGGTTCAAATTCAAAACGCCAAT
ATCAAAGCGTTTGTTATACAAATCTTGAAACTTGGCATCAGTTAACGAGT
TGCACTCCTCATCTTCAATTAGAAATAATTTCTGACAATTTGGTGGAATA
TGATATCTTAActcaatgttttctttcaatttatcaAGTGAATCAATAAT
ACTCCAGTAGAAAATCGATTTTTGTGATGACCCAGTAATGCTCACATGCA
GGTATCCAAGCATTTTGAATTCCCAGTGATGCcttttttgttgatgtttt
tgttttcttaatCTGGAAATAAAAGATATGGATATATTATCAATCCTCCT
AGACACCAGAGCTGCTATCAATattag Run BLAST on NCBI protein sequence of TCONS_00013812-protein >TCONS_00013812-protein ID=TCONS_00013812-protein|Name=TCONS_00013812-protein|organism=Clytia hemisphaerica|type=polypeptide|length=856bp
LILIAALVSRRIDNISISFISRLRKQKHQQKRHHWEFKMLGYLHVSITGS
SQKSIFYWSIIDSLDKLKENIELRYHIPPNCQKLFLIEDEECNSLTDAKF
QDLYNKRFDIGVLNLNLKITDTSIDPRIVEARRQFAAQRLSIIRIHLKDS
GQSNILDIDFKKELNINSTILDLKNYDKYFMFRRINKRFMYFVYENLILS
EEQSLVDLYLDNIIQNGDFVNKLELRFMIPNHFDCDEEFNFGVCTHGSYF
LSPHIRLFFPGIEAQVNDSTTNMKIVPPKTVDHEHYIMECLDSIGYTKVA
YPLLEMYSFDVWTMKCWIKHLFDVSCENQVILYDAYNDLVIADNVILEDW
GTRAGFYRFYVFLLPTSLANQRLKPFTDNDKLNAMKRIDSIPVDVTLYKN
EEDFQKESFSIDPNNGETIHECISRKYNIPLEKQLLFLNDRKINNQDLMA
IQAQRVLAENLRDLRENDRDNQIYIPSPETSFELHLYHVSANDEKEPLVI
INRGFGESIFCQFPMSSLSILESKEQYRTLCRLIKETHPELVPEVIYLTH
DTKHDQTIKLSKQNLGKLLANCLKTNKDLALNLFLNPLNLHTNEEEICQK
YDLSPEIRINFLTGQFKVDLSCDVDQNLGSVQDLKDHIYKIKGILPQLQS
LYHNNTDLSNDVKLFQLLHSPSKVLNLIVKQPQDIEIKLSCTFLPNNPLI
LNILETLTVLDIKESIRELSNNIPVERMMIKHNCQSVPFQVNKPETLVND
DTPVWTLLRDEIYLSVSRSVDYLIRNPNSKVIETNTYEIRFYSAPLENLN
TYLQGRYRNSGKLVHFVQKPNMTLETFLSDIGNDEVVEFILSPSQASHNE
RRCNIC Run BLAST on NCBI transcript from alignment at sc0000173:275235..278061 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013812 ID=TCONS_00013812|Name=TCONS_00013812|organism=Clytia hemisphaerica|type=transcript|length=2827bp|location=Sequence derived from alignment at sc0000173:275235..278061 (Clytia hemisphaerica)
ctaatATTGATAGCAGCTCTGGTGTCTAGGAGGATTGATAATATATCCAT
ATCTTTTATTTCCAGattaagaaaacaaaaacatcaacaaaaaagGCATC
ACTGGGAATTCAAAATGCTTGGATACCTGCATGTGAGCATTACTGGGTCA
TCACAAAAATCGATTTTCTACTGGAGTATTATTGATTCACTtgataaatt
gaaagaaaacattgagTTAAGATATCATATTCCACCAAATTGTCAGAAAT
TATTTCTAATTGAAGATGAGGAGTGCAACTCGTTAACTGATGCCAAGTTT
CAAGATTTGTATAACAAACGCTTTGATATTGGCGTTTTGAATTTGAACCT
TAAAATAACAGATACGTCTATTGATCCGAGAATCGTTGAAGCGAGGCGAC
AATTTGCAGCTCAACGATTATCAATTATAAGAATCCATTTGAAAGATTCT
GGTCAATCTAACATTTTAGACATTGATTTTAAGAAAGAACTGAACATCAA
TTCAACCATCttagatttgaaaaattatgacaaatatTTCATGTTTAGAA
GAATAAACAAACGTTTCATGTATTTTGTATATGAGAATTTGATATTATCT
GAAGAACAGTCATTGGTAGATCTCTATCTTGACAATATTATCCAAAACGG
TGATTTCGTCAATAAGTTAGAATTAAGATTCATGATACCAAATCACTTTG
ATTGCGATGAAGAGTTTAACTTTGGAGTTTGTACCCACGGATCATATTTC
CTGTCTCCACATATTCGTTTATTTTTCCCTGGTATTGAGGCGCAAGTAAA
CGATTCTACCACAAACATGAAAATTGTACCCCCGAAAACTGTAGACCATG
AACATTACATAATGGAATGCTTAGATTCGATAGGATACACTAAAGTAGCG
TATCCATTGCTGGAGATGTATTCATTTGATGTCTGGACAATGAAATGTTG
GATTAAGCATTTATTTGATGTTTCTTGTGAGAACCAAGTGATCTTGTATG
ATGCTTACAATGACTTGGTTATCGCTGATAATGTGATTCTTGAAGATTGG
GGGACAAGAGCTGGTTTCTATCGATTTTATGTTTTCCTACTCCCAACATC
GTTGGCAAACCAGCGTTTAAAACCATTCACCGACAACGATAAGCTCAATG
CAATGAAAAGGATAGATTCAATTCCTGTGGATGTCACTTTGTATAAGAAT
GaagaagattttcaaaaagaatcCTTTTCAATCGATCCAAATAATGGTGA
GACTATCCATGAATGTATTTCACGAAAATATAATATACCACTTGAAAAAC
AACTATTATTTTTGAACGATAGAAAGATCAATAACCAGGATTTAATGGCG
ATACAAGCGCAACGAGTTTTGGCTGAAAACTTGAGGGACCTTAGAGAAAA
TGACAGAGACAACCAAATATACATACCGAGTCCAGAAACGTCTTTTGAGT
TACATCTTTACCATGTATCAGCTAATGATGAGAAAGAACCTTTGGTTATC
ATCAATCGTGGCTTTGGAGAATCAATATTTTGCCAGTTCCCTATGTCTTC
ACTAAGTATTCTTGAGTCTAAGGAACAATACCGAACTTTGTGCAGACTTA
TAAAAGAAACACATCCAGAACTAGTTCCTGAGGTCATTTATTTGACTCAT
GACACCAAACATGATCAAACAATAAAACTGTCAAAACAGAATTTGGGGAA
ACTATTAGCaaattgtttgaaaaccaacaaaGACCTTGCTTTGAATTTAT
TTCTCAACCCTTTAAATCTTCATACCAATGAAGAAGAGATTTGTCAAAAA
TATGATTTATCGCCAgagattcgaatcaattttttgactgGTCAATTTAA
AGTTGACTTATCCTGTGATGTTGATCAAAATCTTGGTTCCGTTCAAGATT
TAAAAGACCATATTTACAAAATCAAAGGTATTTTACCACAACTTCAATCC
TTATACCACAACAATACAGATTTGTCTAACGATGTCAAATTATTTCAACT
TTTGCACTCGCCGTCCAAAGTTTTAAATCTGATCGTCAAACAGCCACAAG
ATATTGAAATTAAGTTAAGCTGTACTTTTTTACCTAACAAccctttaatt
ttgaatatcttggaGACGTTAACCGTATTGGATATTAAAGAGAGCATTAG
AGAGCTTTCCAACAACATACCAGTCGAACGAATGATGATAAAACACAATT
GCCAATCAGTTCCATTCCAGGTTAATAAGCCTGAAACCCTAGTTAATGAT
GACACACCAGTCTGGACTTTACTAAGAGACGAAATATACTTAtctgtatc
aagatcggtggaCTATTTGATCCGAAATCCAAACAGTAAAGTAATCGAAA
CAAATACTTATGAAATAAGATTTTACTCTGCTCCCTTGGAGAACCTAAAC
ACCTATTTACAGGGACGCTATCGAAATTCTGGTAAACTGGTTCATTTTGT
TCAGAAACCAAATATGactttggaaacttttttaagTGATATTGGAAATG
ATGAAGTTGTTGAATTTATACTTTCCCCTTCTCAAGCAAGTCATAATGAA
CGTCGTTGTAACATCTGTTAACgcaactggcacacaacattagttcgacg
ttcatctaacgttatatgggcgttttgaacattaaatgaacgttgaaaaa
acgtcgTTGTAATATCTGTTAACCCAACTGACACTCAACGTTAGTTCGAC
GTTCccttaacgttatatggacgttgtgaacattagataaacgttgaaac
aacgtcgttgTAATAtatgttaaatttttttgtttcattttcacgAACAA
GAATACTGTAGAAAAATAGAATCTGCG Coding sequence (CDS) from alignment at sc0000173:275235..278061 >TCONS_00013812 ID=TCONS_00013812|Name=TCONS_00013812|organism=Clytia hemisphaerica|type=CDS|length=2571bp|location=Sequence derived from alignment at sc0000173:275235..278061 (Clytia hemisphaerica)
ctaatATTGATAGCAGCTCTGGTGTCTAGGAGGATTGATAATATATCCAT
ATCTTTTATTTCCAGattaagaaaacaaaaacatcaacaaaaaagGCATC
ACTGGGAATTCAAAATGCTTGGATACCTGCATGTGAGCATTACTGGGTCA
TCACAAAAATCGATTTTCTACTGGAGTATTATTGATTCACTtgataaatt
gaaagaaaacattgagTTAAGATATCATATTCCACCAAATTGTCAGAAAT
TATTTCTAATTGAAGATGAGGAGTGCAACTCGTTAACTGATGCCAAGTTT
CAAGATTTGTATAACAAACGCTTTGATATTGGCGTTTTGAATTTGAACCT
TAAAATAACAGATACGTCTATTGATCCGAGAATCGTTGAAGCGAGGCGAC
AATTTGCAGCTCAACGATTATCAATTATAAGAATCCATTTGAAAGATTCT
GGTCAATCTAACATTTTAGACATTGATTTTAAGAAAGAACTGAACATCAA
TTCAACCATCttagatttgaaaaattatgacaaatatTTCATGTTTAGAA
GAATAAACAAACGTTTCATGTATTTTGTATATGAGAATTTGATATTATCT
GAAGAACAGTCATTGGTAGATCTCTATCTTGACAATATTATCCAAAACGG
TGATTTCGTCAATAAGTTAGAATTAAGATTCATGATACCAAATCACTTTG
ATTGCGATGAAGAGTTTAACTTTGGAGTTTGTACCCACGGATCATATTTC
CTGTCTCCACATATTCGTTTATTTTTCCCTGGTATTGAGGCGCAAGTAAA
CGATTCTACCACAAACATGAAAATTGTACCCCCGAAAACTGTAGACCATG
AACATTACATAATGGAATGCTTAGATTCGATAGGATACACTAAAGTAGCG
TATCCATTGCTGGAGATGTATTCATTTGATGTCTGGACAATGAAATGTTG
GATTAAGCATTTATTTGATGTTTCTTGTGAGAACCAAGTGATCTTGTATG
ATGCTTACAATGACTTGGTTATCGCTGATAATGTGATTCTTGAAGATTGG
GGGACAAGAGCTGGTTTCTATCGATTTTATGTTTTCCTACTCCCAACATC
GTTGGCAAACCAGCGTTTAAAACCATTCACCGACAACGATAAGCTCAATG
CAATGAAAAGGATAGATTCAATTCCTGTGGATGTCACTTTGTATAAGAAT
GaagaagattttcaaaaagaatcCTTTTCAATCGATCCAAATAATGGTGA
GACTATCCATGAATGTATTTCACGAAAATATAATATACCACTTGAAAAAC
AACTATTATTTTTGAACGATAGAAAGATCAATAACCAGGATTTAATGGCG
ATACAAGCGCAACGAGTTTTGGCTGAAAACTTGAGGGACCTTAGAGAAAA
TGACAGAGACAACCAAATATACATACCGAGTCCAGAAACGTCTTTTGAGT
TACATCTTTACCATGTATCAGCTAATGATGAGAAAGAACCTTTGGTTATC
ATCAATCGTGGCTTTGGAGAATCAATATTTTGCCAGTTCCCTATGTCTTC
ACTAAGTATTCTTGAGTCTAAGGAACAATACCGAACTTTGTGCAGACTTA
TAAAAGAAACACATCCAGAACTAGTTCCTGAGGTCATTTATTTGACTCAT
GACACCAAACATGATCAAACAATAAAACTGTCAAAACAGAATTTGGGGAA
ACTATTAGCaaattgtttgaaaaccaacaaaGACCTTGCTTTGAATTTAT
TTCTCAACCCTTTAAATCTTCATACCAATGAAGAAGAGATTTGTCAAAAA
TATGATTTATCGCCAgagattcgaatcaattttttgactgGTCAATTTAA
AGTTGACTTATCCTGTGATGTTGATCAAAATCTTGGTTCCGTTCAAGATT
TAAAAGACCATATTTACAAAATCAAAGGTATTTTACCACAACTTCAATCC
TTATACCACAACAATACAGATTTGTCTAACGATGTCAAATTATTTCAACT
TTTGCACTCGCCGTCCAAAGTTTTAAATCTGATCGTCAAACAGCCACAAG
ATATTGAAATTAAGTTAAGCTGTACTTTTTTACCTAACAAccctttaatt
ttgaatatcttggaGACGTTAACCGTATTGGATATTAAAGAGAGCATTAG
AGAGCTTTCCAACAACATACCAGTCGAACGAATGATGATAAAACACAATT
GCCAATCAGTTCCATTCCAGGTTAATAAGCCTGAAACCCTAGTTAATGAT
GACACACCAGTCTGGACTTTACTAAGAGACGAAATATACTTAtctgtatc
aagatcggtggaCTATTTGATCCGAAATCCAAACAGTAAAGTAATCGAAA
CAAATACTTATGAAATAAGATTTTACTCTGCTCCCTTGGAGAACCTAAAC
ACCTATTTACAGGGACGCTATCGAAATTCTGGTAAACTGGTTCATTTTGT
TCAGAAACCAAATATGactttggaaacttttttaagTGATATTGGAAATG
ATGAAGTTGTTGAATTTATACTTTCCCCTTCTCAAGCAAGTCATAATGAA
CGTCGTTGTAACATCTGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013812-exon-sc0000173-1491911889:275235..278061 | TCONS_00013812-exon-sc0000173-1491911889:275235..278061 | Clytia hemisphaerica | exon |
| TCONS_00013812-exon-sc0000173-1510915933:275235..278061 | TCONS_00013812-exon-sc0000173-1510915933:275235..278061 | Clytia hemisphaerica | exon |
| TCONS_00013812-exon-sc0000173-1575043694:275235..278061 | TCONS_00013812-exon-sc0000173-1575043694:275235..278061 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000173 | supercontig | sc0000173:275235..278061 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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