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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013801 ID=TCONS_00013801|Name=TCONS_00013801|organism=Clytia hemisphaerica|type=transcript|length=1267bp
aaagatgaaaaatttttctcttcgTAGAAAGTTTAGTACTAATAAAGTGC
AAACAGCAAGAAAAACAATACCAGGCAAAATGGAAGTTTTTGCTGAAATT
GCATTCGTTACATTATTGGTAACAACGGCACCTTATTTGAttggaaatta
ttatttggtttggtttgttGTTTTATGTTTATCAATGATAGCTGTGCTAG
AGACTTTGAAAAAACATGGACTGATCATTGAAATTTGCGACAGATTGCCA
ACCATTcgtaaagcaaaacaaaaaatatcaactagACGAAGCTTTGTTGA
ATTTAACATCAACTCNACAGATTGCCAATCATTcgtaaagcaaaacaaaa
aatatcaactagACGAAGCTTTGTTGAATTTAACATCAACTCAAATAAAT
TATCAGCTTTTGGAAAGGAAACTCTTTTAAAACAACATCCAGGTTTAACA
TTGAAACATCGAAGAACTACATCATTGTCTGCTTTCTCAAACTCTTGGAG
ATCAAAAAGCACCAAGGTAATTGTTGAAaccgaaatttgaaaaaaggacA
ATGGAAAATCTGTGTGCTGTGATCAAAAGATCTTCAAAAGTCTCAAAAGA
TGACAATTATTTTTacgaaaaagtgaaagaaaaattgagtgatctttgaa
atttgaaataaaaaaaaaattgacagcaGAATATATCAAATATAAcagaa
tttgtttttaaagaagattACAGAGTAAAGACCTCCTATGACTTTAATAA
TACTGTCGAACTTGCTAACCGCATTGGGTTCAACTTCAGCGTTTTTAAAT
CAtttgtaggcccaattgtaaatttgataaaagtaaCCAATTTCACCAAA
TCGGACCTTTTCTTCACCAAAGgagcaagtgtgcaaaatttcagccatat
ccgaccatttttgaagtttctaggctgccccaaagttttagcctcgtttt
ggcgctAAAACTTGTCTCCAGNgcaaaatttcagccatatccgaccattt
ttgaagtttctaggctgccccaaagttttagcctcgttttggcgctAAAA
CTTGTCTCCAGgcccaaaatatcaaaatatattcaaaaaatgtacaCCCC
CAGGCATTGTCaaattctagctcaactgaaattaagaataattgaatttc
gaatggggatcaAATGAAAGACCACgaaattttaaggtatttttccTATC
GGGTAAAATACTTTCCAGTTGGTAGGAGTCCAGCGGGCTTGTGACATAAT
ATACGAAAGGGGGAAGA Run BLAST on NCBI protein sequence of TCONS_00013801-protein >TCONS_00013801-protein ID=TCONS_00013801-protein|Name=TCONS_00013801-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
KMKNFSLRRKFSTNKVQTARKTIPGKMEVFAEIAFVTLLVTTAPYLIGNY
YLVWFVVLCLSMIAVLETLKKHGLIIEICDRLPTIRKAKQKISTRRSFVE
FNINXTDCQSFVKQNKKYQLDEALLNLTSTQINYQLLERKLF Run BLAST on NCBI transcript from alignment at sc0000173:2..1268 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013801 ID=TCONS_00013801|Name=TCONS_00013801|organism=Clytia hemisphaerica|type=transcript|length=1267bp|location=Sequence derived from alignment at sc0000173:2..1268 (Clytia hemisphaerica)
TCTTCCCCCTTTCGTATATTATGTCACAAGCCCGCTGGACTCCTACCAAC
TGGAAAGTATTTTACCCGATAggaaaaataccttaaaatttcGTGGTCTT
TCATTtgatccccattcgaaattcaattattcttaatttcagttgagcta
gaatttGACAATGCCTGGGGGtgtacattttttgaatatattttgatatt
ttgggcCTGGAGACAAGTTTTagcgccaaaacgaggctaaaactttgggg
cagcctagaaacttcaaaaatggtcggatatggctgaaattttgcNCTGG
AGACAAGTTTTagcgccaaaacgaggctaaaactttggggcagcctagaa
acttcaaaaatggtcggatatggctgaaattttgcacacttgctcCTTTG
GTGAAGAAAAGGTCCGATTTGGTGAAATTGGttacttttatcaaatttac
aattgggcctacaaaTGATTTAAAAACGCTGAAGTTGAACCCAATGCGGT
TAGCAAGTTCGACAGTATTATTAAAGTCATAGGAGGTCTTTACTCTGTaa
tcttctttaaaaacaaattctgTTATATTTGATATATTCtgctgtcaatt
ttttttttatttcaaatttcaaagatcactcaatttttctttcacttttt
cgtAAAAATAATTGTCATCTTTTGAGACTTTTGAAGATCTTTTGATCACA
GCACACAGATTTTCCATTgtccttttttcaaatttcggtTTCAACAATTA
CCTTGGTGCTTTTTGATCTCCAAGAGTTTGAGAAAGCAGACAATGATGTA
GTTCTTCGATGTTTCAATGTTAAACCTGGATGTTGTTTTAAAAGAGTTTC
CTTTCCAAAAGCTGATAATTTATTTGAGTTGATGTTAAATTCAACAAAGC
TTCGTctagttgatattttttgttttgctttacgAATGATTGGCAATCTG
TNGAGTTGATGTTAAATTCAACAAAGCTTCGTctagttgatattttttgt
tttgctttacgAATGGTTGGCAATCTGTCGCAAATTTCAATGATCAGTCC
ATGTTTTTTCAAAGTCTCTAGCACAGCTATCATTGATAAACATAAAACaa
caaaccaaaccaaataataatttccaaTCAAATAAGGTGCCGTTGTTACC
AATAATGTAACGAATGCAATTTCAGCAAAAACTTCCATTTTGCCTGGTAT
TGTTTTTCTTGCTGTTTGCACTTTATTAGTACTAAACTTTCTAcgaagag
aaaaatttttcatcttt Coding sequence (CDS) from alignment at sc0000173:2..1268 >TCONS_00013801 ID=TCONS_00013801|Name=TCONS_00013801|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at sc0000173:2..1268 (Clytia hemisphaerica)
TTAAAAGAGTTTCCTTTCCAAAAGCTGATAATTTATTTGAGTTGATGTTA
AATTCAACAAAGCTTCGTctagttgatattttttgttttgctttacgAAT
GATTGGCAATCTGTNGAGTTGATGTTAAATTCAACAAAGCTTCGTctagt
tgatattttttgttttgctttacgAATGGTTGGCAATCTGTCGCAAATTT
CAATGATCAGTCCATGTTTTTTCAAAGTCTCTAGCACAGCTATCATTGAT
AAACATAAAACaacaaaccaaaccaaataataatttccaaTCAAATAAGG
TGCCGTTGTTACCAATAATGTAACGAATGCAATTTCAGCAAAAACTTCCA
TTTTGCCTGGTATTGTTTTTCTTGCTGTTTGCACTTTATTAGTACTAAAC
TTTCTAcgaagagaaaaatttttcatctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013801-exon-sc0000173-1491911889:2..1268 | TCONS_00013801-exon-sc0000173-1491911889:2..1268 | Clytia hemisphaerica | exon |
| TCONS_00013801-exon-sc0000173-1510915933:2..1268 | TCONS_00013801-exon-sc0000173-1510915933:2..1268 | Clytia hemisphaerica | exon |
| TCONS_00013801-exon-sc0000173-1575043694:2..1268 | TCONS_00013801-exon-sc0000173-1575043694:2..1268 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000173 | supercontig | sc0000173:2..1268 . |
Blast
The following BLAST results are available for this feature:
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