TCONS_00013799 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00013799
Unique Name	TCONS_00013799
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1082

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000173:420155..422497-
coding sequence from alignment at sc0000173:420155..422497-

transcript sequence

>TCONS_00013799 ID=TCONS_00013799|Name=TCONS_00013799|organism=Clytia hemisphaerica|type=transcript|length=1082bp
GGATTGAAAAAGAAACCGTGATTGAATGGTTCACATCAAATGCAACATGG
GTAGAAAGCTTGCTGTCCAAAAAGTGTGCCTCGATGCGACTTGATATTAT
TACAGGAAGGGGAAAGTATTTCAATAGGATATCAACAAAAACGAATGAAC
ATGAAGACGAAGAGGagaaacaaaaacaagaaagggaagttgaaaaatat
gctGAGGACAAACAAAGCGATGAAGCCGAGGACAAAAGAAACGATCAAGC
CAAGGAGAATGAATTTATTGAAGTAGTTGTAACACCCAAAATGGTAACGC
GCCACATGGGCTTAGGATTCATCAGAACAGGAAATTTTGGGGACGATGCT
TTTAACGCAATCAATGACAAAATAACCGAACTAACGAAGGACAGACGCAA
AACAAACATCGTTATAGGCGTTTATTGTCCCATCATCTTGATATGGATGG
TACAATCCCTTTGCAAGATCAACTATCAAGCCGCCATGTTTTATTTAGAT
CATTCGTACCTTCTTCAAACGAAAGGCCCAAGAAAGAATGATGAAGAATC
AGATGAGGATGAAGAACTCAACGAAAGCAGCAAAATTCGAAAAACCATCC
AACAAAAGATTGATCAATTGACGAACGAAATTGACTCCAAGTCGAACAAA
AACGATCTTTGTAAGACAGTCAAGTACAGACGTTCCGAATACCTCATGAT
ACTATACATCAACCGAAATGAAATAGAAAATGATTCATGGAGCACGAAAA
CTTGgactgaaaagaaaaaagcttATGACCATGTATTCCCTATAAACAAT
GAGAACCAAAAGGTTAAAGATATTATCCGTGGTATGGTGAGGCAATATGA
AAAAGACAAAGTAAACAATTACCGCAACTGGGAGAAACAACTGGGAAAAG
CCAGGGAATACTACCGAAAACTAGAATCTTTACACAATAATCTGGTTACT
GAATACTAGGAATAGACTATGAAAATCAAGAGTCAACATTGCTTGTTATG
ATTAGTTTATTTTTTGTGCATTCTGATTGATTATAGGTTATATATCTTTC
TGGTATTTTGAGACACTAATTTTAAATGTCTT

Run BLAST on NCBI

protein sequence of TCONS_00013799-protein

>TCONS_00013799-protein ID=TCONS_00013799-protein|Name=TCONS_00013799-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
IEKETVIEWFTSNATWVESLLSKKCASMRLDIITGRGKYFNRISTKTNEH
EDEEEKQKQEREVEKYAEDKQSDEAEDKRNDQAKENEFIEVVVTPKMVTR
HMGLGFIRTGNFGDDAFNAINDKITELTKDRRKTNIVIGVYCPIILIWMV
QSLCKINYQAAMFYLDHSYLLQTKGPRKNDEESDEDEELNESSKIRKTIQ
QKIDQLTNEIDSKSNKNDLCKTVKYRRSEYLMILYINRNEIENDSWSTKT
WTEKKKAYDHVFPINNENQKVKDIIRGMVRQYEKDKVNNYRNWEKQLGKA
REYYRKLESLHNNLVTEY

Run BLAST on NCBI

transcript from alignment at sc0000173:420155..422497-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00013799 ID=TCONS_00013799|Name=TCONS_00013799|organism=Clytia hemisphaerica|type=transcript|length=2343bp|location=Sequence derived from alignment at sc0000173:420155..422497- (Clytia hemisphaerica)
GGATTGAAAAAGAAACCGTGATTGAATGGTTCACATCAAATGCAACATGG
GTAGAAAGCTTGCTGTCCAAAAAGTGTGCCTCGATGCGACTTGATATTAT
TACAGGTACTTCTTTTATTTTTTTAAATGTTTTTGGAATAGCTGATGTTT
TTGTAATTAATCAATCATTTTCTTTCTTACTTATTAAAGTGATTCGATGT
CTTGAATCTATGGAAGCATCTAATATTTTTGATTTGATTTAAATACAGGA
AGGGGAAAGTATTTCAATAGGATATCAACAAAAACGAATGAACATGAAGA
CGAAGAGGAGAAACAAAAACAAGAAAGGGAAGTTGAAAAATATGCTGAGG
ACAAACAAAGCGATGAAGCCGAGGACAAAAGAAACGATCAAGCCAAGGAG
AATGAATTTATTGAAGTAGTTGTAACACCCAAAATGGTAACGCGCCACAT
GGGCTTAGGATTCATCAGAACAGGTATAAAACAACAAACCTTTTTAAGCA
TTTTTTTCTGAAAAAAAATTAATGTGTTTAACGGTATGATAATTTAAAAC
TAAGATCATAGGATTTGACTTTACACTACTAGTAGATGGATAGGATTGTT
GTTTGCAAGTGAGATTATGACGTTGGTTGCTTTTTTTGGGATAAGATTTT
TTGAACATATGATTATTTCAAGTCGCTGCTTAAAGCCATTCTTGGTTTTC
AGGAAATTTTGGGGACGATGCTTTTAACGCAATCAATGACAAAATAACCG
AACTAACGAAGGACAGACGCAAAACAAACATCGTTATAGGCGTTTATTGT
CCCATCATCTTGATATGGATGGTACAATCCCTTTGCAAGATCAACTATCA
AGCCGCCATGTTTTATTTAGATCATTCGTACCTTCTTCAAAGTAAGAAAT
ATTACTTGTTATTGCGTGTAAAGCTTGTTGTGAGATAGTCAAAGAAGAAT
ATCATTTTAAAGTGTTCTTACATTTGGAATTACAAAATTGCATAGAAACA
TAAATTGAAAATTTTGTAGTTTAAAATTTTAAAGCCTAAATCTTTTCCCA
GTTGATTATTCAATGAATTTATTGTTTTATTATTTATTATTTATATGCCT
TTCTGTCATATTGGGTTTACTGTTATCCAGTCTGTTACAGAAACTAGTCA
AAATGGAGATTTTTTTAGTTTGATAATTTTTTAAGTTTGATAATTTATTA
TAATTTACTACTTTTACTTTTAGCGAAAGGCCCAAGAAAGAATGATGAAG
AATCAGATGAGGATGAAGAACTCAACGAAAGCAGCAAAATTCGAAAAACC
ATCCGTAAGTTTGTTCTTATCATCAAAAATTCTTTTCGCATTGTATTTCC
TGTCAACGTTTTAAAAGAATCTTTCATATTTATTATTGTAGTGATTATCG
TCTACACTGTGTGTCTGGTGTTAACCTCCTCCCTTATAAATGGGGGTGGG
TAGAGACTTTCAAAAAATCTAAAGGAAGGTGTCTGAAAAAAATGAAAAAA
ATAAAGGGATGGGCTACAAAGAAGAGAAAAGTAAGACTTTAATGGGAGGG
ATGAAGAATCTTTACGAGAACGTGTAAATGAAATGTAACAAATGTCATTG
AATATTACTCAATGCTATGAAAAACAATGATAAAATTGATTTTCTTCAAA
TTTTGGACACTTTCTTTAAAATTGCTTCAATTTTGATTTATATGAACCGT
AATGAAAGGTCAATTTTACCAGGGGGAGAAATATTTTTGGAGAAAGGGTA
TTTAATGAGGCAGGGGTAAATTTTAACAAGGAGTAAAAAAAATATATATG
CTCAAAAATATGCTATTTTTTATCGATTATATCAAGCGTGTTGATATCTT
TTTATTCGTAGAACAAAAGATTGATCAATTGACGAACGAAATTGACTCCA
AGTCGAACAAAAACGATCTTTGTAAGACAGTCAAGTACAGACGTTCCGAA
TACCTCATGATACTATACATCAACCGAAATGAAATAGAAAATGATTCATG
GAGCACGAAAACTTGGACTGAAAAGAAAAAAGCTTATGACCATGTATTCC
CTATAAACAATGAGAACCAAAAGGTTAAAGATATTATCCGTGGTATGGTG
AGGCAATATGAAAAAGACAAAGTAAACAATTACCGCAACTGGGAGAAACA
ACTGGGAAAAGCCAGGGAATACTACCGAAAACTAGAATCTTTACACAATA
ATCTGGTTACTGAATACTAGGAATAGACTATGAAAATCAAGAGTCAACAT
TGCTTGTTATGATTAGTTTATTTTTTGTGCATTCTGATTGATTATAGGTT
ATATATCTTTCTGGTATTTTGAGACACTAATTTTAAATGTCTT

Coding sequence (CDS) from alignment at sc0000173:420155..422497-

>TCONS_00013799 ID=TCONS_00013799|Name=TCONS_00013799|organism=Clytia hemisphaerica|type=CDS|length=4785bp|location=Sequence derived from alignment at sc0000173:420155..422497- (Clytia hemisphaerica)
AACAAAAGATTGATCAATTGACGAACGAAATTGACTCCAAGTCGAACAAA
AACGATCTTTGTAAGACAGTCAAGTACAGACGTTCCGAATACCTCATGAT
ACTATACATCAACCGAAATGAAATAGAAAATGATTCATGGAGCACGAAAA
CTTGGACTGAAAAGAAAAAAGCTTATGACCATGTATTCCCTATAAACAAT
GAGAACCAAAAGGTTAAAGATATTATCCGTGGTATGGTGAGGCAATATGA
AAAAGACAAAGTAAACAATTACCGCAACTGGGAGAAACAACTGGGAAAAG
CCAGGGAATACTACCGAAAACTAGAATCTTTACACAATAATCTGGTTACT
GAATACTAGCGAAAGGCCCAAGAAAGAATGATGAAGAATCAGATGAGGAT
GAAGAACTCAACGAAAGCAGCAAAATTCGAAAAACCATCCGAAATTTTGG
GGACGATGCTTTTAACGCAATCAATGACAAAATAACCGAACTAACGAAGG
ACAGACGCAAAACAAACATCGTTATAGGCGTTTATTGTCCCATCATCTTG
ATATGGATGGTACAATCCCTTTGCAAGATCAACTATCAAGCCGCCATGTT
TTATTTAGATCATTCGTACCTTCTTCAAAGAAGGGGAAAGTATTTCAATA
GGATATCAACAAAAACGAATGAACATGAAGACGAAGAGGAGAAACAAAAA
CAAGAAAGGGAAGTTGAAAAATATGCTGAGGACAAACAAAGCGATGAAGC
CGAGGACAAAAGAAACGATCAAGCCAAGGAGAATGAATTTATTGAAGTAG
TTGTAACACCCAAAATGGTAACGCGCCACATGGGCTTAGGATTCATCAGA
ACAGATTGAAAAAGAAACCGTGATTGAATGGTTCACATCAAATGCAACAT
GGGTAGAAAGCTTGCTGTCCAAAAAGTGTGCCTCGATGCGACTTGATATT
ATTACAGAACAAAAGATTGATCAATTGACGAACGAAATTGACTCCAAGTC
GAACAAAAACGATCTTTGTAAGACAGTCAAGTACAGACGTTCCGAATACC
TCATGATACTATACATCAACCGAAATGAAATAGAAAATGATTCATGGAGC
ACGAAAACTTGGACTGAAAAGAAAAAAGCTTATGACCATGTATTCCCTAT
AAACAATGAGAACCAAAAGGTTAAAGATATTATCCGTGGTATGGTGAGGC
AATATGAAAAAGACAAAGTAAACAATTACCGCAACTGGGAGAAACAACTG
GGAAAAGCCAGGGAATACTACCGAAAACTAGAATCTTTACACAATAATCT
GGTTACTGAATACTAGCGAAAGGCCCAAGAAAGAATGATGAAGAATCAGA
TGAGGATGAAGAACTCAACGAAAGCAGCAAAATTCGAAAAACCATCCGAA
ATTTTGGGGACGATGCTTTTAACGCAATCAATGACAAAATAACCGAACTA
ACGAAGGACAGACGCAAAACAAACATCGTTATAGGCGTTTATTGTCCCAT
CATCTTGATATGGATGGTACAATCCCTTTGCAAGATCAACTATCAAGCCG
CCATGTTTTATTTAGATCATTCGTACCTTCTTCAAAGAAGGGGAAAGTAT
TTCAATAGGATATCAACAAAAACGAATGAACATGAAGACGAAGAGGAGAA
ACAAAAACAAGAAAGGGAAGTTGAAAAATATGCTGAGGACAAACAAAGCG
ATGAAGCCGAGGACAAAAGAAACGATCAAGCCAAGGAGAATGAATTTATT
GAAGTAGTTGTAACACCCAAAATGGTAACGCGCCACATGGGCTTAGGATT
CATCAGAACAGATTGAAAAAGAAACCGTGATTGAATGGTTCACATCAAAT
GCAACATGGGTAGAAAGCTTGCTGTCCAAAAAGTGTGCCTCGATGCGACT
TGATATTATTACAGAACAAAAGATTGATCAATTGACGAACGAAATTGACT
CCAAGTCGAACAAAAACGATCTTTGTAAGACAGTCAAGTACAGACGTTCC
GAATACCTCATGATACTATACATCAACCGAAATGAAATAGAAAATGATTC
ATGGAGCACGAAAACTTGGACTGAAAAGAAAAAAGCTTATGACCATGTAT
TCCCTATAAACAATGAGAACCAAAAGGTTAAAGATATTATCCGTGGTATG
GTGAGGCAATATGAAAAAGACAAAGTAAACAATTACCGCAACTGGGAGAA
ACAACTGGGAAAAGCCAGGGAATACTACCGAAAACTAGAATCTTTACACA
ATAATCTGGTTACTGAATACTAGCGAAAGGCCCAAGAAAGAATGATGAAG
AATCAGATGAGGATGAAGAACTCAACGAAAGCAGCAAAATTCGAAAAACC
ATCCGAAATTTTGGGGACGATGCTTTTAACGCAATCAATGACAAAATAAC
CGAACTAACGAAGGACAGACGCAAAACAAACATCGTTATAGGCGTTTATT
GTCCCATCATCTTGATATGGATGGTACAATCCCTTTGCAAGATCAACTAT
CAAGCCGCCATGTTTTATTTAGATCATTCGTACCTTCTTCAAAGAAGGGG
AAAGTATTTCAATAGGATATCAACAAAAACGAATGAACATGAAGACGAAG
AGGAGAAACAAAAACAAGAAAGGGAAGTTGAAAAATATGCTGAGGACAAA
CAAAGCGATGAAGCCGAGGACAAAAGAAACGATCAAGCCAAGGAGAATGA
ATTTATTGAAGTAGTTGTAACACCCAAAATGGTAACGCGCCACATGGGCT
TAGGATTCATCAGAACAGATTGAAAAAGAAACCGTGATTGAATGGTTCAC
ATCAAATGCAACATGGGTAGAAAGCTTGCTGTCCAAAAAGTGTGCCTCGA
TGCGACTTGATATTATTACAGAACAAAAGATTGATCAATTGACGAACGAA
ATTGACTCCAAGTCGAACAAAAACGATCTTTGTAAGACAGTCAAGTACAG
ACGTTCCGAATACCTCATGATACTATACATCAACCGAAATGAAATAGAAA
ATGATTCATGGAGCACGAAAACTTGGACTGAAAAGAAAAAAGCTTATGAC
CATGTATTCCCTATAAACAATGAGAACCAAAAGGTTAAAGATATTATCCG
TGGTATGGTGAGGCAATATGAAAAAGACAAAGTAAACAATTACCGCAACT
GGGAGAAACAACTGGGAAAAGCCAGGGAATACTACCGAAAACTAGAATCT
TTACACAATAATCTGGTTACTGAATACTAGCGAAAGGCCCAAGAAAGAAT
GATGAAGAATCAGATGAGGATGAAGAACTCAACGAAAGCAGCAAAATTCG
AAAAACCATCCGAAATTTTGGGGACGATGCTTTTAACGCAATCAATGACA
AAATAACCGAACTAACGAAGGACAGACGCAAAACAAACATCGTTATAGGC
GTTTATTGTCCCATCATCTTGATATGGATGGTACAATCCCTTTGCAAGAT
CAACTATCAAGCCGCCATGTTTTATTTAGATCATTCGTACCTTCTTCAAA
GAAGGGGAAAGTATTTCAATAGGATATCAACAAAAACGAATGAACATGAA
GACGAAGAGGAGAAACAAAAACAAGAAAGGGAAGTTGAAAAATATGCTGA
GGACAAACAAAGCGATGAAGCCGAGGACAAAAGAAACGATCAAGCCAAGG
AGAATGAATTTATTGAAGTAGTTGTAACACCCAAAATGGTAACGCGCCAC
ATGGGCTTAGGATTCATCAGAACAGATTGAAAAAGAAACCGTGATTGAAT
GGTTCACATCAAATGCAACATGGGTAGAAAGCTTGCTGTCCAAAAAGTGT
GCCTCGATGCGACTTGATATTATTACAGAACAAAAGATTGATCAATTGAC
GAACGAAATTGACTCCAAGTCGAACAAAAACGATCTTTGTAAGACAGTCA
AGTACAGACGTTCCGAATACCTCATGATACTATACATCAACCGAAATGAA
ATAGAAAATGATTCATGGAGCACGAAAACTTGGACTGAAAAGAAAAAAGC
TTATGACCATGTATTCCCTATAAACAATGAGAACCAAAAGGTTAAAGATA
TTATCCGTGGTATGGTGAGGCAATATGAAAAAGACAAAGTAAACAATTAC
CGCAACTGGGAGAAACAACTGGGAAAAGCCAGGGAATACTACCGAAAACT
AGAATCTTTACACAATAATCTGGTTACTGAATACTAGCGAAAGGCCCAAG
AAAGAATGATGAAGAATCAGATGAGGATGAAGAACTCAACGAAAGCAGCA
AAATTCGAAAAACCATCCGAAATTTTGGGGACGATGCTTTTAACGCAATC
AATGACAAAATAACCGAACTAACGAAGGACAGACGCAAAACAAACATCGT
TATAGGCGTTTATTGTCCCATCATCTTGATATGGATGGTACAATCCCTTT
GCAAGATCAACTATCAAGCCGCCATGTTTTATTTAGATCATTCGTACCTT
CTTCAAAGAAGGGGAAAGTATTTCAATAGGATATCAACAAAAACGAATGA
ACATGAAGACGAAGAGGAGAAACAAAAACAAGAAAGGGAAGTTGAAAAAT
ATGCTGAGGACAAACAAAGCGATGAAGCCGAGGACAAAAGAAACGATCAA
GCCAAGGAGAATGAATTTATTGAAGTAGTTGTAACACCCAAAATGGTAAC
GCGCCACATGGGCTTAGGATTCATCAGAACAGATTGAAAAAGAAACCGTG
ATTGAATGGTTCACATCAAATGCAACATGGGTAGAAAGCTTGCTGTCCAA
AAAGTGTGCCTCGATGCGACTTGATATTATTACAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_007704	XLOC_007704	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00013799-protein	TCONS_00013799-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000173	supercontig	sc0000173:420155..422497 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0433067	0	0	0	0	0.0823453	0	0.0270276	0	0.0230761	0.0495284	0	0.0312692	0	0	0.078584	0	0	0	0	0.0389407	0	0.11894	0	0.0459559

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00013799 vs. Swiss-Prot (Human)

BLAST of TCONS_00013799 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00013799 (transcript) - C. hemisphaerica