TCONS_00013793 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013793
Unique NameTCONS_00013793
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length260

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013793 ID=TCONS_00013793|Name=TCONS_00013793|organism=Clytia hemisphaerica|type=transcript|length=260bp
cctctctagcacCTCCGGACTTCAAACTCGATGGTACGGACGCTCCATAA
CAGCGGCATAACCAGTCAATCATTCTAGCAGAACAATTCTTATCTTTAGA
GTTATaaacaaacgaaaaaataaatttttgaaaaaaaaacatggggACAA
TAGTGTGGTGGTCATTGTTCCTGATGCTAAAATTAACAGTCGTTAATGGC
AAAATACAACATGGTAATGGTACATTTCTGATTAACGGTATCTTTCCAAT
TACAAACGAA
Run BLAST on NCBI

transcript from alignment at sc0000173:222354..223102-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013793 ID=TCONS_00013793|Name=TCONS_00013793|organism=Clytia hemisphaerica|type=transcript|length=749bp|location=Sequence derived from alignment at sc0000173:222354..223102- (Clytia hemisphaerica)
CCTCTCTAGCACCTCCGGACTTCAAACTCGATGGTACGGACGCTCCATAA
CAGCGGCATAACCAGTCAATCATTCTAGCAGAACAATTCTTATCTTTAGA
GTTATAAACAAACGAAAAAATAAATTTTTGAAAAAAAAACATGGGGACAA
TAGTGTGGTGGTCATTGTTCCTGATGCTAAAATTAACAGTCGTTAATGGC
AAAATACAACATGGTAAATATATCACGTTTTTTATCTGTAGAGAAACCAG
GATTTGAGTACATTTAAGAAAGAAATTTGGAATTAGAAATTAAGAATATC
GCAAGAACACCTGCATTTTACACCTTTTTTACATGTAGAGAGCTCATGTT
TTGAGCACATTAAAGGTTGAAATTTGGAGCTAGAAAATAAGAATATCATT
TGAATTCTCGTTCTGTTCCGAAACTATTCAAGGCTTTTTTTGGCTAACCT
GTAAAGCTAAATAATTATTCTAACCGATAGTACAGTTAGTTTTGTATTAA
TTCAAAGTGGTTAAGTAAGTTTGTGACCCTTTTCACTAGCTATCTACCCG
AACATATGGGATGTCTCCACTTACCCTTGATTCTTACCTTAATTGTTGAG
CATCAAGCGGGCATCTTACGGGTCGTAGCTGGATGCTCTACCTCCATGCT
ACGGCCGCTTTTCGTATAAATCTTAAAATTGTGTACATTCTTTTTCATTC
AGGTAATGGTACATTTCTGATTAACGGTATCTTTCCAATTACAAACGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007699XLOC_007699Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013793-exon-sc0000173-1575043694:222890..223102TCONS_00013793-exon-sc0000173-1575043694:222890..223102Clytia hemisphaericaexon
TCONS_00013793-exon-sc0000173-1575043694:222354..222400TCONS_00013793-exon-sc0000173-1575043694:222354..222400Clytia hemisphaericaexon
TCONS_00013793-exon-sc0000173-1510915933:222890..223102TCONS_00013793-exon-sc0000173-1510915933:222890..223102Clytia hemisphaericaexon
TCONS_00013793-exon-sc0000173-1510915933:222354..222400TCONS_00013793-exon-sc0000173-1510915933:222354..222400Clytia hemisphaericaexon
TCONS_00013793-exon-sc0000173-1491911889:222890..223102TCONS_00013793-exon-sc0000173-1491911889:222890..223102Clytia hemisphaericaexon
TCONS_00013793-exon-sc0000173-1491911889:222354..222400TCONS_00013793-exon-sc0000173-1491911889:222354..222400Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000173supercontigsc0000173:222354..223102 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	2.61963	5.44102	0.745543	0.800082	0.985636	0	8.37425	7.30254	0	0.928787	0.752708	0	2.1145	1.2581	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013793 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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