TCONS_00013792 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013792
Unique NameTCONS_00013792
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2746

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013792 ID=TCONS_00013792|Name=TCONS_00013792|organism=Clytia hemisphaerica|type=transcript|length=2746bp
TTATaaacaaacgaaaaaataaatttttgaaaaaaaaacatggggACAAT
AGTGTGGTGGTCATTGTTCCTGATGCTAAAATTAACAGTCGTTAATGGCA
AAATACAACATGGCAATGGTACATTTCTGATAAACGGTATCTTTCCAATC
ACAAACGAAAATGAAGAATTAAACCCTCAACTCGGTATAATGTATTCAGA
GGCGATGAAATGGGCCATACAAGAAGTCAACAAAAATCGATCCTATTTAC
ACGGATACCAATTCGATGTCAACAAGATTTATGATTCGATTAAAGAAGAG
CAGGTCCAGAAAAATGTTTTGGATACTTTCATGGAGAAGATACCGTTCCT
TGTAGGTCCGTATTCCTCGGATACGTCTTACACGTCAAGTATCTTGACCA
AGACGTTTCAGGATATCAACGGGATCAGCTACAGTGCAACGTTCTCGGAT
TTCGACATGATGAATTCGGACGAAGAACGTATGTTGAGAACCGTACCGTC
GGATCGTTTCCGTGTCGACGCCGTTCTAGCGTTGATTAAAGATCTACGTT
GGAATTTCGTTTCCGTTGTAAGCTCTTACGGATATAATGGGGAGCGCGAA
GCGTTACATCTGACGTCCAAGATTTCGTCTGTGGGTGCTTGTCTCGCGGC
ACAAATCGATCTCGCCAAATCACCAACAAACGAAGATTACCAAAAAACCA
TCGATAATTTGCGGTTAGATTCTCGCCTCAAAGTTGTCGTTTTATTTACA
TCTGGGAAAGACACGAGAAATTTTATGGCAATGTTAAAGAAACTGAATTT
GGCGAATCGGTTTAATTTGATCTGCGCGTACGGGTGTACAAATTATATTA
ACGTTATTGAAGGAAATGAACTCGTGGCTGAAGGAGCTCTAAGTCTCGAT
GTCAAACTACCAGATACTTCTAAATTTACCGAATATTTTCTCAACAAAAA
GCCCACAGCTAATTCGTTAGAACCTTTCAATATATATTGGGAAAGACTTT
TTGATTGCTCTTTAAATCAAACGAACATgcgaaaatacttaaaaatgtGC
ACCATGAAGGAAAGTCTCAAACTGGGGTCTGGATACTACATCAATACCCC
CGTCCACACTGTCATTAATGCTGTTTTTCATTTTGCACGTGTTGTCCACA
GCTTCTCATTAGTTTATTGTCACGTGGATCGGAATTGGGTGAACAAGACA
ATGCCATGCCCTCTCGACCCTTCAACTGCCAAATCCTACTCCATGTTTTT
TCATCGCGTCCTAAAGAAAAGTGCACACAAAGATGGGACGCTTTACACTG
GCACTATTGAGCCGTTCACTATGGGTGTTGGAAATGAAGTCGATGATGGT
AAGGTCCAGTATGAAGTTCACAAGTATTCGtttaaaaatcgggaaaacac
GAATACAAAAATATGGCAATGGGTTGCAGATCGTCAAAGTAAAAAACCGG
GAGTCGGGAAATTTTTAGAAGCCTGGTACTCGGCTTCGCCGAATATGACG
ATCGTGGAACATCGAGGAACGTGCAGTAAAGAATGTCCTTTAGGATCAAT
TCGTGATTACGATCGAAActcattaaaatcaaaatgttgCTGGTCGTGTC
AAGCGTGTCCGAAAAATCACCGTGTCATGAATAATACGTGTCAGCCGTGT
AAGCAAGCCGAAGTTGTCGGACCACGGTACGGAACATGCCTTTTAATGCA
GGAAAGAATGATAAGTTGGAGAGAGCCGATTGTTCtatgttttattgttt
tatcaATCCTCGGGATCTGCTTAACCGTGTTTGTAGCGCTCGTTTTTTGT
CGTTACAACGATAACCGTATCGTGAGAGCAGCCGGCCGTGACTTGAGTTA
CATGATTTTACTCGGCATCTGTTTCACATTTTCATGCTGTTTTGTTTTCA
TATGGGAGACAACTCAATCGACGTGTATCTTACGAGGCGGCTTACCTGGA
TTTTCGTTCCTGACGTGTTACGCTCCTCTCTTCTTAAAAACGATTCGTAT
CTATCGTATATTTGTCGGTGCGCAAGTTTCCGTATCCCGACCTGCTTTAG
TAAGCACGCAATCACAATTCATAGCTTTGTTTGTGATCCTATCAACCCAA
CTATTAATCAGTGTCGTTTGGTTCGTATCGAAGATTCCAACACCGGAGAT
TATAGTTACCGGAGAATACGTAACCAGTCATTGTAGTGGTGACGCCAGTC
CCATTCTGTTATTCTTGAACTTATCTCTAAGCGTCATATTCATGGTGTCG
TGTACCGTACTAGCCTTCAAGACACGACATTTTCCGAAAAACTTTAACGA
GGCTAAATTTATTGGAATCACGCTTTACATCACTTGTGTAGGATGGGCCG
TATTTCTACCAGTTTATTTTTTAGCACCCCATTTACACCGTGACTTTATG
AAAGAATTATTGATGTGTGCTGTATGTACTTTTATAGGCTATGTTACACT
GTTTGGTTTATTTGGACACAAAATGAAGCTGTTGTTATTCGGACCACTTC
CGCCCGCGCGACAGGGGAGTATTCCTACATGGTATATACCACGGGAACAT
TCGAAAAGTCTTTCAAGTACTTATAGCTGTGAGTGTAAAATGTACAGCCC
TAAAAGTTGCTGTGAAGAACTGAATGGATTCTCTAGTTTATAAACTTTTA
TTTGTTGCCTGTATTTCTTAAGTTTATTAGgggtttttaatttatttttt
gtagtaAAGGATGTTTGTTTTAAAGATTGGAAAGAGCGAAAAGAAA
Run BLAST on NCBI

transcript from alignment at sc0000173:219656..223001-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013792 ID=TCONS_00013792|Name=TCONS_00013792|organism=Clytia hemisphaerica|type=transcript|length=3346bp|location=Sequence derived from alignment at sc0000173:219656..223001- (Clytia hemisphaerica)
TTATAAACAAACGAAAAAATAAATTTTTGAAAAAAAAACATGGGGACAAT
AGTGTGGTGGTCATTGTTCCTGATGCTAAAATTAACAGTCGTTAATGGCA
AAATACAACATGGTAAATATATCACGTTTTTTATCTGTAGAGAAACCAGG
ATTTGAGTACATTTAAGAAAGAAATTTGGAATTAGAAATTAAGAATATCG
CAAGAACACCTGCATTTTACACCTTTTTTACATGTAGAGAGCTCATGTTT
TGAGCACATTAAAGGTTGAAATTTGGAGCTAGAAAATAAGAATATCATTT
GAATTCTCGTTCTGTTCCGAAACTATTCAAGGCTTTTTTTGGCTAACCTG
TAAAGCTAAATAATTATTCTAACCGATAGTACAGTTAGTTTTGTATTAAT
TCAAAGTGGTTAAGTAAGTTTGTGACCCTTTTCACTAGCTATCTACCCGA
ACATATGGGATGTCTCCACTTACCCTTGATTCTTACCTTAATTGTTGAGC
ATCAAGCGGGCATCTTACGGGTCGTAGCTGGATGCTCTACCTCCATGCTA
CGGCCGCTTTTCGTATAAATCTTAAAATTGTGTACATTCTTTTTCATTCA
GGTAATGGTACATTTCTGATTAACGGTATCTTTCCAATTACAAACGAAAN
CCTCCATGCTACGGCTGCTTTTCGTATAAATCTTAAAATTGTGTACATTC
TTTTTCATTCAGGCAATGGTACATTTCTGATAAACGGTATCTTTCCAATC
ACAAACGAAAATGAAGAATTAAACCCTCAACTCGGTATAATGTATTCAGA
GGCGATGAAATGGGCCATACAAGAAGTCAACAAAAATCGATCCTATTTAC
ACGGATACCAATTCGATGTCAACAAGATTTATGATTCGATTAAAGAAGAG
CAGGTCCAGAAAAATGTTTTGGATACTTTCATGGAGAAGATACCGTTCCT
TGTAGGTCCGTATTCCTCGGATACGTCTTACACGTCAAGTATCTTGACCA
AGACGTTTCAGGATATCAACGGGATCAGCTACAGTGCAACGTTCTCGGAT
TTCGACATGATGAATTCGGACGAAGAACGTATGTTGAGAACCGTACCGTC
GGATCGTTTCCGTGTCGACGCCGTTCTAGCGTTGATTAAAGATCTACGTT
GGAATTTCGTTTCCGTTGTAAGCTCTTACGGATATAATGGGGAGCGCGAA
GCGTTACATCTGACGTCCAAGATTTCGTCTGTGGGTGCTTGTCTCGCGGC
ACAAATCGATCTCGCCAAATCACCAACAAACGAAGATTACCAAAAAACCA
TCGATAATTTGCGGTTAGATTCTCGCCTCAAAGTTGTCGTTTTATTTACA
TCTGGGAAAGACACGAGAAATTTTATGGCAATGTTAAAGAAACTGAATTT
GGCGAATCGGTTTAATTTGATCTGCGCGTACGGGTGTACAAATTATATTA
ACGTTATTGAAGGAAATGAACTCGTGGCTGAAGGAGCTCTAAGTCTCGAT
GTCAAACTACCAGATACTTCTAAATTTACCGAATATTTTCTCAACAAAAA
GCCCACAGCTAATTCGTTAGAACCTTTCAATATATATTGGGAAAGACTTT
TTGATTGCTCTTTAAATCAAACGAACATGCGAAAATACTTAAAAATGTGC
ACCATGAAGGAAAGTCTCAAACTGGGGTCTGGATACTACATCAATACCCC
CGTCCACACTGTCATTAATGCTGTTTTTCATTTTGCACGTGTTGTCCACA
GCTTCTCATTAGTTTATTGTCACGTGGATCGGAATTGGGTGAACAAGACA
ATGCCATGCCCTCTCGACCCTTCAACTGCCAAATCCTACTCCATGTTTTT
TCATCGCGTCCTAAAGAAAAGTGCACACAAAGATGGGACGCTTTACACTG
GCACTATTGAGCCGTTCACTATGGGTGTTGGAAATGAAGTCGATGATGGT
AAGGTCCAGTATGAAGTTCACAAGTATTCGTTTAAAAATCGGGAAAACAC
GAATACAAAAATATGGCAATGGGTTGCAGATCGTCAAAGTAAAAAACCGG
GAGTCGGGAAATTTTTAGAAGCCTGGTACTCGGCTTCGCCGAATATGACG
ATCGTGGAACATCGAGGAACGTGCAGTAAAGAATGTCCTTTAGGATCAAT
TCGTGATTACGATCGAAACTCATTAAAATCAAAATGTTGCTGGTCGTGTC
AAGCGTGTCCGAAAAATCACCGTGTCATGAATAATACGTGTCAGCCGTGT
AAGCAAGCCGAAGTTGTCGGACCACGGTACGGAACATGCCTTTTAATGCA
GGAAAGAATGATAAGTTGGAGAGAGCCGATTGTTCTATGTTTTATTGTTT
TATCAATCCTCGGGATCTGCTTAACCGTGTTTGTAGCGCTCGTTTTTTGT
CGTTACAACGATAACCGTATCGTGAGAGCAGCCGGCCGTGACTTGAGTTA
CATGATTTTACTCGGCATCTGTTTCACATTTTCATGCTGTTTTGTTTTCA
TATGGGAGACAACTCAATCGACGTGTATCTTACGAGGCGGCTTACCTGGA
TTTTCGTTCCTGACGTGTTACGCTCCTCTCTTCTTAAAAACGATTCGTAT
CTATCGTATATTTGTCGGTGCGCAAGTTTCCGTATCCCGACCTGCTTTAG
TAAGCACGCAATCACAATTCATAGCTTTGTTTGTGATCCTATCAACCCAA
CTATTAATCAGTGTCGTTTGGTTCGTATCGAAGATTCCAACACCGGAGAT
TATAGTTACCGGAGAATACGTAACCAGTCATTGTAGTGGTGACGCCAGTC
CCATTCTGTTATTCTTGAACTTATCTCTAAGCGTCATATTCATGGTGTCG
TGTACCGTACTAGCCTTCAAGACACGACATTTTCCGAAAAACTTTAACGA
GGCTAAATTTATTGGAATCACGCTTTACATCACTTGTGTAGGATGGGCCG
TATTTCTACCAGTTTATTTTTTAGCACCCCATTTACACCGTGACTTTATG
AAAGAATTATTGATGTGTGCTGTATGTACTTTTATAGGCTATGTTACACT
GTTTGGTTTATTTGGACACAAAATGAAGCTGTTGTTATTCGGACCACTTC
CGCCCGCGCGACAGGGGAGTATTCCTACATGGTATATACCACGGGAACAT
TCGAAAAGTCTTTCAAGTACTTATAGCTGTGAGTGTAAAATGTACAGCCC
TAAAAGTTGCTGTGAAGAACTGAATGGATTCTCTAGTTTATAAACTTTTA
TTTGTTGCCTGTATTTCTTAAGTTTATTAGGGGTTTTTAATTTATTTTTT
GTAGTAAAGGATGTTTGTTTTAAAGATTGGAAAGAGCGAAAAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007699XLOC_007699Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013792-exon-sc0000173-1575043694:222890..223001TCONS_00013792-exon-sc0000173-1575043694:222890..223001Clytia hemisphaericaexon
TCONS_00013792-exon-sc0000173-1575043694:219656..222289TCONS_00013792-exon-sc0000173-1575043694:219656..222289Clytia hemisphaericaexon
TCONS_00013792-exon-sc0000173-1510915933:222890..223001TCONS_00013792-exon-sc0000173-1510915933:222890..223001Clytia hemisphaericaexon
TCONS_00013792-exon-sc0000173-1510915933:219656..222289TCONS_00013792-exon-sc0000173-1510915933:219656..222289Clytia hemisphaericaexon
TCONS_00013792-exon-sc0000173-1491911889:222890..223001TCONS_00013792-exon-sc0000173-1491911889:222890..223001Clytia hemisphaericaexon
TCONS_00013792-exon-sc0000173-1491911889:219656..222289TCONS_00013792-exon-sc0000173-1491911889:219656..222289Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000173supercontigsc0000173:219656..223001 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.125857	0.0954571	0	0	0.112546	0.163924	0	0.301423	0.223899	0.261399	0.592014	0.149014	16.4989	14.4492	0.762303	1.03111	0.53266	0.706536	28.6011	24.5934	1.54135	1.18103	0.513086	0.652628	2.83765	1.07985	0.0572318	0	0.0155213	0
Blast
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BLAST of TCONS_00013792 vs. Swiss-Prot (Human)
Match: GRM8 (Metabotropic glutamate receptor 8 OS=Homo sapiens GN=GRM8 PE=2 SV=2)

HSP 1 Score: 290.426 bits (742), Expect = 1.521e-83
Identity = 235/837 (28.08%), Postives = 370/837 (44.21%), Query Frame = 1 
Query:  115 NGTFLINGIFPITNENE------ELNPQLGIMYSEAMKWAIQEVNKNRSYLHGYQFDVNKI----YDSIKEEQ--------VQKNVLD-----------TFMEKIPFLVGPYSSDTSYTSSILTKTFQDINGISYSATFSDFDMMNSDEERMLRTVPSDRFRVDAVLALIKDLRWNFVSVVSSYGYNGEREALHLTSKISSVGA-CLAAQIDLAKSPTNEDYQKTIDNLRLDSRLKVVVLFTSGKDTRNFMAMLKKLNLANRFNLICAYGCTNYINVIEGNELVAEGALSLDVKLPDTSKFTEYFLNKKPTANSLEP-FNIYWERLFDCSLNQTNMR-KYLKMCTMKESLKLGSGYYINTPVHTVINAVFHFARVVHSFSLVYCHVDRNWVNKTMPCPLDPSTAKSYSMFFHRVLKKSAHKDGTLYTGTIEPFTMGVGNEVDDGKVQYEVHKYSFKNRENTNTKIWQWVADRQSKKPGVG-KFLEAWYSASPNMTIVEHRGTCSKECPLGSIRDYDRNSLKSKCCWSCQACPK-NHRVMNNTCQPCKQAEVVGPRYGTCLLMQERMISWREPIVLCFIVLSILGICLTVFVALVFCRYNDNRIVRAAGRDLSYMILLGICFTFSCCFVFIWETTQSTCILRGGLPGFSFLTCYAPLFLKTIRIYRIFVGAQVSVSRPALVSTQSQFIALFVILSTQLLISVVWFVSKIPTPEIIVT-GEYVT---SHCSG----DASPILLFLNLSLSVIFMVSCTVLAFKTRHFPKNFNEAKFIGITLYITCVGWAVFLPVYF-LAPHLHRDFMKELLMCAVCTFIGYVTLFGLFGHKMKLLLFGP 2496
            +G  ++ G+FP+  + E      EL  + GI   EAM +AI ++NK+   L      V  +     D+   EQ        ++K+  D           T  +KI  ++G  +S  S   + + + F+ I  ISY++T  +    N+  +   R VP D ++  A++ ++  L WN+VS ++S G  GE      T     +G  C+A    + + P   +++K I  L      + V++F +  D R  +   KKLN +  F  I +    + I  +   E +AEGA+++  K      F  YF ++    N     F  +WE  F C L     R  ++K CT  E +   S Y     V  VI+AV+  A  +H+     C     ++     CP   +      + + R +  +         GT  P T    NE  D   +Y++ +Y   N+      I  W      K   +     E  + AS           CS  C  G   +  +      CCW C+ C   N++V   +C+ C   +        C L+    + W  P  +  + ++ILGI  T FV + F RYND  IVRA+GR+LSY++L GI   +S  F+ I       C  R    G      YA L  KT RI+RIF   + SV+ P  +S  SQ +  F ++S QLL   VWFV  +  P II+  GE  T       G    D S + L  +L  S++ MV+CTV A KTR  P+ FNEAK IG T+Y TC+ W  F+P++F  A    + +++   +    +    V+L  L+  K+ +++F P
Sbjct:   43 DGDIILGGLFPVHAKGERGVPCGELKKEKGIHRLEAMLYAIDQINKDPDLLSNITLGVRILDTCSRDTYALEQSLTFVQALIEKDASDVKCANGDPPIFTKPDKISGVIGAAASSVSIMVANILRLFK-IPQISYASTAPELSD-NTRYDFFSRVVPPDSYQAQAMVDIVTALGWNYVSTLASEGNYGESGVEAFTQISREIGGVCIAQSQKIPREPRPGEFEKIIKRLLETPNARAVIMFANEDDIRRILEAAKKLNQSGHFLWIGSDSWGSKIAPVYQQEEIAEGAVTILPKRASIDGFDRYFRSRTLANNRRNVWFAEFWEENFGCKLGSHGKRNSHIKKCTGLERIARDSSYEQEGKVQFVIDAVYSMAYALHNMHKDLCP---GYIGL---CPRMSTIDGKELLGYIRAVNFNGS------AGT--PVTF---NENGDAPGRYDIFQYQITNKSTEYKVIGHWTNQLHLKVEDMQWAHREHTHPAS----------VCSLPCKPG---ERKKTVKGVPCCWHCERCEGYNYQVDELSCELCPLDQRPNMNRTGCQLIPIIKLEWHSPWAVVPVFVAILGIIATTFVIVTFVRYNDTPIVRASGRELSYVLLTGIFLCYSITFLMIAAPDTIICSFRRVFLGLGMCFSYAALLTKTNRIHRIFEQGKKSVTAPKFISPASQLVITFSLISVQLLGVFVWFV--VDPPHIIIDYGEQRTLDPEKARGVLKCDISDLSLICSLGYSILLMVTCTVYAIKTRGVPETFNEAKPIGFTMYTTCIIWLAFIPIFFGTAQSAEKMYIQTTTLTVSMSLSASVSLGMLYMPKVYIIIFHP 845
The following BLAST results are available for this feature:
BLAST of TCONS_00013792 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GRM81.521e-8328.08Metabotropic glutamate receptor 8 OS=Homo sapiens ... [more]
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