TCONS_00013788 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013788
Unique NameTCONS_00013788
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2092

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013788 ID=TCONS_00013788|Name=TCONS_00013788|organism=Clytia hemisphaerica|type=transcript|length=2092bp
ttacctttttcttctttttcttgtctttcttctttttgcttttctttttc
ctcttcTTTTCTACCTGATGTTCGCTTGCTTCTGAAGAGCTTTCCCCACT
CCTCTCTTTCTCTGAGTCCAATATTTGTATCACGTATCCCGTCTTGTTTT
TCTTCGAGGTCGAAGACCGGTGTGACCGAGAATCTTCTTCTGTATCTCGT
TCACTTGTCGTTGTCGTAGTGTACCGACGTTTATCGCGACGATCATCTTC
GCGTTTACGTATCTGCCGCTGTTCGTCTTCGTATTTCTCCCGCTCCATAT
CCTTTCGTATCTGCCGTTCTTTCTCTAGCTTGCGTTCTAGTCTCTCTTTA
TCTTTCAACGCTTGACGTTCACGCTCAACCATTTCTTCCTTCTCTTTCTG
TAGTTTATACATCCGTTTCTTTTCACGTAATTCACGTTCGTACTCTTTTT
CACGGCGTCGATTCTCTTCTTCTTCCTTCCGTCTTCGTTCACGTTCTCTG
TCTTTCTCGTGTTCTCTACTTTCCCCACGTTCCCTTTCCCGAGATCGTCG
ACTTTCAGGGACTTTCCGTGTAGAGCGGGACGATGTTTCTTTCACGACAC
GTCTACTGGTTCGATCATCGCCAGAGTCACTCTCGTCATCAGAGACGCCT
CCTCTTTTCCTTCGATCTTTGGCAACGTTCACTTTACTTCGGACGTCTGA
CGACGAAGAATGTCGCTcctcattttcttttaattgtTTCTTACTGGCAT
CACTTATCGTTTTCAATTTGGAATCACCACCGAGCTTATAAAAGTTTTGA
TCAGGTCGTTTTCTTTCCTTATCGCTCAACAAACTCTTCTTGTCGATTTT
CTCTTTCGATCTATTATGAACACTTTCTGTTTTATCACTTTCTTCCGCTG
ATTTCGCCGAGGCGGCCGATTTCCGTCGTTCAAGGATAGCCTTTTCTTTG
gctttctttttcaataaaaggtATTTCTCCATCTTACGCTTTCTCTCTTC
CTTCGAATCTTTTACGTCCTTTACACTCTTAGTGTCCTTTGCTTCATTAA
CTTTCTCCAAAAGTTGTTTCTTCTCCGCCTCCTTCTTAGCTTGAACTTCA
GCTAGCAGTTGTTTCGCCTTTGCAGCACTTTTATCCGCCATTCGTTTCTT
GTGAAGCTCTTTCTTCTTATCCGGAGTCATTTTCACGACTACTTTTGCGT
TACCGACAGTCCGTTTAACAAGTGTCTTTTCAGAGCCTTCCAATCTAACC
TTTTTAACCGAAGGAGACTCTTTCTTAAGAACAGACTCTGTTTTTTCGTT
TGCTTCTCCAGCATTTCGAGTAATAGTCTCCGAGATGATCTGTCCGTCTC
TTTTCCGTTTAATAACACGCGTCACTTTCTTTTTAACTACAATTTTCGTT
TTTCGTTTCGGCTTTGGTACGGTCTTTTCGTTCTCTTCCGTTCCTTCCTT
TTCGACTTTCTCCTCACCTTTTTCCACAGATTCACCGTTTGATTTCTCTT
CTTTGACATCTTCCCCGGCGCCGTTTTGATGCTCCAAAGGAGGAGTGTTC
TCATCAGTTTCTATCTGTTCTTCAGCCTCCGCACCTTCCAGCGCGAGTGC
GTTTTCAGCAGGTGCTTGATTCGGTTCGGGTGATTTCTCATCATCTACAT
CCACTTGTTGTTGCGTATCATCATCATCAGGGGTCGGCGTTACACTATCC
CGTGCTTCTTGTTGTGTTTGCTGTTGAGTCGTTTCTTTACCTAGTTTTCT
CAATTCTTCATCGAATTCCATTTCATTATCAAATTCAAACTCATCCACCT
CTCTCTTAATCCGATCGGGGATACGTCTTTTCTTATCGGCCAGCGTACCA
CGAGAACGTTGCTTCACAGACGTATCGGGTTGACTGTCCTGTGATGAATC
ACGGTGACGACGTTTCATCTTGTCTTTTTTACGTTTTGAGGATGATTTAC
GTTCCTGACTCGAGTCATCAGCAGGTGAATCATATCGTTTCTTAGAACCA
TCGCTTGGTGATATACTACGGTACCGCCTTCTACGTCCTCGCTTATCGTT
CGGGCTTCGTGGGGAACGGCTACGGCTTCGATGACGAACAGG
Run BLAST on NCBI

transcript from alignment at sc0000173:159656..162293-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013788 ID=TCONS_00013788|Name=TCONS_00013788|organism=Clytia hemisphaerica|type=transcript|length=2638bp|location=Sequence derived from alignment at sc0000173:159656..162293- (Clytia hemisphaerica)
TTACCTTTTTCTTCTTTTTCTTGTCTTTCTTCTTTTTGCTTTTCTTTTTC
CTCTTCTTTTCTACCTGATGTTCGCTTGCTTCTGAAGAGCTTTCCCCACT
CCTCTCTTTCTCTGAGTCCAATATTTGTATCACGTATCCCGTCTTGTTTT
TCTTCGAGGTCGAAGACCGGTGTGACCGAGAATCTTCTTCTGTATCTCGT
TCACTTGTCGTTGTCGTAGTGTACCGACGTTTATCGCGACGATCATCTTC
GCGTTTACGTATCTGCCGCTGTTCGTCTTCGTATTTCTCCCGCTCCATAT
CCTTTCGTATCTGCCGTTCTTTCTCTAGCTTGCGTTCTAGTCTCTCTTTA
TCTTTCAACGCTTGACGTTCACGCTCAACCATTTCTTCCTTCTCTTTCTG
TAGTTTATACATCCGTTTCTTTTCACGTAATTCACGTTCGTACTCTTTTT
CACGGCGTCGATTCTCTTCTTCTTCCTTCCGTCTTCGTTCACGTTCTCTG
TCTTTCTCGTGTTCTCTACTTTCCCCACGTTCCCTTTCCCGAGATCGTCG
ACTTTCAGGGACTTTCCGTGTAGAGCGGGACGATGTTTCTTTCACGACAC
GTCTACTGGTTCGATCATCGCCAGAGTCACTCTCGTCATCAGAGACGCCT
CCTCTTTTCCTTCGATCTTTGGCAACGTTCACTTTACTTCGGACGTCTGA
CGACGAAGAATGTCGCTCCTCATTTTCTTTTAATTGTTTCTTACTGGCAT
CACTTATCGTTTTCAATTTGGAATCACCACCGAGCTTATAAAAGTTTTGA
TCAGGTCGTTTTCTTTCCTTATCGCTCAACAAACTCTTCTTGTCGATTTT
CTCTTTCGATCTATTATGAACACTTTCTGTTTTATCACTTTCTTCCGCTG
ATTTCGCCGAGGCGGCCGATTTCCGTCGTTCAAGGATAGCCTTTTCTTTG
GCTTTCTTTTTCAATAAAAGGTATTTCTCCATCTTACGCTTTCTCTCTTC
CTTCGAATCTTTTACGTCCTTTACACTCTTAGTGTCCTTTGCTTCATTAA
CTTTCTCCAAAAGTTGTTTCTTCTCCGCCTCCTTCTTAGCTTGAACTTCA
GCTAGCAGTTGTTTCGCCTTTGCAGCACTTTTATCCGCCATTCGTTTCTT
GTGAAGCTCTTTCTTCTTATCCGGAGTCATTTTCACGACTACTTTTGCGT
TACCGACAGTCCGTTTAACAAGTGTCTTTTCAGAGCCTTCCAATCTAACC
TTTTTAACCGAAGGAGACTCTTTCTTAAGAACAGACTCTGTTTTTTCGTT
TGCTTCTCCAGCATTTCGAGTAATAGTCTCCGAGATGATCTGTCCGTCTC
TTTTCCGTTTAATAACACGCGTCACTTTCTTTTTAACTACAATTTTCGTT
TTTCGTTTCGGCTTTGGTACGGTCTTTTCGTTCTCTTCCGTTCCTTCCTT
TTCGACTTTCTCCTCACCTTTTTCCACAGATTCACCGTTTGATTTCTCTT
CTTTGACATCTTCCCCGGCGCCGTTTAGATGCTCCAAAGGAGGAGTGTTC
TCATCAGTTTCCATCTGTTCTTCAGCCTCCGCACCTTCCAGCGCGAGTGC
GTTTTCAGCAGGTGCTTGATTCGGTTCGGGTGATTTCTCATCATCTACAT
CCTCTTGTTGTTGCGTATCATCATCATCAGGGGTCGGCGTTACACTATCC
CGTGCTTCTTGTTGTGTTTGCTGTTGAGTCGTTTCTTTACCTAGTTTTCT
CAATTCTTCATCGAATTCCATTTCATTATCAAATTCAAACTCATCCACCT
CTCTTTTAATCCGATCGGGAATACGTCTTTTCTTATCGACCAGCGTACCA
CGAGAACGTTGCTTCACAGACGTATCGGGTTGACTGTCCTGTGATGAATC
ACGGTGACGACGTTTTGTCTTGTCTTTTTTACGTTTTGAGGATGATTTAC
GTTCCTGACTCGAGTCATCAGCAGGTGAATCATATCGTTTCTTAGAACCA
TCGCTTGGTNTACCTTTTTCCACAGATTCACCGTTTGATTTCTCTTCTTT
GACATCTTCCCCGGCGCCGTTTTGATGCTCCAAAGGAGGAGTGTTCTCAT
CAGTTTCTATCTGTTCTTCAGCCTCCGCACCTTCCAGCGCGAGTGCGTTT
TCAGCAGGTGCTTGATTCGGTTCGGGTGATTTCTCATCATCTACATCCAC
TTGTTGTTGCGTATCATCATCATCAGGGGTCGGCGTTACACTATCCCGTG
CTTCTTGTTGTGTTTGCTGTTGAGTCGTTTCTTTACCTAGTTTTCTCAAT
TCTTCATCGAATTCCATTTCATTATCAAATTCAAACTCATCCACCTCTCT
CTTAATCCGATCGGGGATACGTCTTTTCTTATCGGCCAGCGTACCACGAG
AACGTTGCTTCACAGACGTATCGGGTTGACTGTCCTGTGATGAATCACGG
TGACGACGTTTCATCTTGTCTTTTTTACGTTTTGAGGATGATTTACGTTC
CTGACTCGAGTCATCAGCAGGTGAATCATATCGTTTCTTAGAACCATCGC
TTGGTGATATACTACGGTACCGCCTTCTACGTCCTCGCTTATCGTTCGGG
CTTCGTGGGGAACGGCTACGGCTTCGATGACGAACAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007697XLOC_007697Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013788-exon-sc0000173-1575043694:160787..162293TCONS_00013788-exon-sc0000173-1575043694:160787..162293Clytia hemisphaericaexon
TCONS_00013788-exon-sc0000173-1575043694:159656..160240TCONS_00013788-exon-sc0000173-1575043694:159656..160240Clytia hemisphaericaexon
TCONS_00013788-exon-sc0000173-1510915933:160787..162293TCONS_00013788-exon-sc0000173-1510915933:160787..162293Clytia hemisphaericaexon
TCONS_00013788-exon-sc0000173-1510915933:159656..160240TCONS_00013788-exon-sc0000173-1510915933:159656..160240Clytia hemisphaericaexon
TCONS_00013788-exon-sc0000173-1491911889:160787..162293TCONS_00013788-exon-sc0000173-1491911889:160787..162293Clytia hemisphaericaexon
TCONS_00013788-exon-sc0000173-1491911889:159656..160240TCONS_00013788-exon-sc0000173-1491911889:159656..160240Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000173supercontigsc0000173:159656..162293 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.37041	3.81689	3.78727	3.37763	13.3042	8.29241	7.43937	10.166	4.39141	7.13178	7.66472	6.30505	4.24569	3.31456	3.53225	3.48792	4.34886	5.91267	0.991315	2.58376	3.63501	4.26412	2.91367	3.2546	6.34306	6.11805	0	1.42272	1.93475	1.77434
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013788 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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