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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013787 ID=TCONS_00013787|Name=TCONS_00013787|organism=Clytia hemisphaerica|type=transcript|length=4545bpRun BLAST on NCBI protein sequence of TCONS_00013787-protein >TCONS_00013787-protein ID=TCONS_00013787-protein|Name=TCONS_00013787-protein|organism=Clytia hemisphaerica|type=polypeptide|length=856bp MVETREKNFSCVYLKLMQFFQNTENFEEVRQLIVTWNGSTISDSTINVRGRun BLAST on NCBI transcript from alignment at sc0000173:73597..136024- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013787 ID=TCONS_00013787|Name=TCONS_00013787|organism=Clytia hemisphaerica|type=transcript|length=62428bp|location=Sequence derived from alignment at sc0000173:73597..136024- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000173:73597..136024- >TCONS_00013787 ID=TCONS_00013787|Name=TCONS_00013787|organism=Clytia hemisphaerica|type=CDS|length=59133bp|location=Sequence derived from alignment at sc0000173:73597..136024- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013787 vs. Swiss-Prot (Human)
Match: TELO2 (Telomere length regulation protein TEL2 homolog OS=Homo sapiens GN=TELO2 PE=1 SV=2) HSP 1 Score: 320.857 bits (821), Expect = 1.460e-92 Identity = 221/761 (29.04%), Postives = 381/761 (50.07%), Query Frame = 1
Query: 1201 EEFERFISSGDKSQSFIVQTNLFDGKQKIDSKSCHSSVEKLLCESLVNFLKKDRLVDVFWQQCMVKPTQVLNQRHVYAPSVQTTWDNLERLIVTLPDLISNRLKLATSSCFVPKNYTQIISRAFLETLRRIQNALQNSHDCSLHFLSQLLGKFCMRGYADLLFDELLPEFIDLSKKSPLWRRICSKLVTSVHENQLEAVLQPIIKRYESLDVFSYLLDSINLTSNNKLKFLFTNKWIFIKTAPNDIVPYLVLKHL---TKYENEXXXXXXXXXXXWGDQGAIQNTSIKQHEYLSKCILISLGLLTGELKKAWKQELIMKLLETVQCHLQSPNVKIRDFGMVIAEMLTKTVDGEDGKILNFELKRTDELEYLYSLANDPLNALRVRYAPQSKEEETNNIKQQAEVTESLP-----NKRASFQSKGREESLDSDDEFEPLNVENGKEIDENIQSVNGVQPPLYLRDCISGLLSNKDPDRLETCLKALANLVRKEPGDLNDVAIELLRILLHLENEYNITDFHQIKSESICLVTCKCPNQTSVYLCQQFFEENYSITQRLDILEAISSSVTILAKP-------ESENPEEYRAHLPAPIVKFTKGVEPTEWKAIVDERVKKKTKRFN-SGKRQEIEAKENRLSTVIGSFFYPLIQHFGTLNQSSKLLSTEPMLLGKYIYTLALILQAAYGLPEVTAMSRTLLEMIWGVRFHSESFVRQALIFATSKVVFNVPSFALMSEIQSEIMEAQSWLHGIVERDPDMECR 3435
E + F G Q+F+V +G + + L FL++ RL + QC R P + L +V LPD + NRL+ + F P+NY +++ + L+ + ++LQ D S+ F+SQ+LGK C+ G + L+P L++ S L +R+C +LV V + +EAVL +++ +V S LL ++ + N K +F+ T K +F+++ + +L HL ++ +VL +LL+ WG AI++T + Q ++SK +LI L L + + EL+ ++ V+C L S +R GM++AE+++ + E G L F+ + DEL P A + E T+ + AE P Q G + LDSDDEF P ++ +E+ + + P Y+RDC+ L +++D +R E L+AL LV + P +V++EL ++LLHLE + + F ++ ++ VT P + YL QF+ NYS+ QR+DIL+ ++ + L++P + +P LP V ++W+ +V+ER++ KT+R + G RQ +R ++V G FF+PL+Q F + LL + ++LG+ +TL ++ A AM + LLE +W +RFH +++VRQ L+ A S V+ ++P+ L+ ++ E++EA+SWL + E+DPD +CR
Sbjct: 85 ELWASFFLEGPADQAFLVLMETIEGAAGPSFRLMK------MARLLARFLREGRLAVLMEAQC----------RQQTQPGFILLRETLLGKVVALPDHLGNRLQQENLAEFFPQNYFRLLGEEVVRVLQAVVDSLQGGLDSSVSFVSQVLGKACVHGRQQEILGVLVPRLAALTQGSYLHQRVCWRLVEQVPDRAMEAVLTGLVEAALGPEVLSRLLGNL-VVKNKKAQFVMTQKLLFLQSRLTTPMLQSLLGHLAMDSQRRPLLLQVLKELLETWGSSSAIRHTPLPQQRHVSKAVLICLAQLGEPELRDSRDELLASMMAGVKCRLDSSLPPVRRLGMIVAEVVSARIHPE-GPPLKFQYEE-DELSLELLALASPQPA-----GDGASEAGTSLVPATAEPPAETPAEIVDGGVPQAQLAGSDSDLDSDDEFVPYDMSGDRELKSS-------KAPAYVRDCVEALTTSEDIERWEAALRALEGLVYRSPTATREVSVELAKVLLHLEEKTCVVGFAGLRQRALVAVTVTDPAPVADYLTSQFYALNYSLRQRMDILDVLTLAAQELSRPGCLGRTPQPGSPSPNTPCLPEAAVSQPGSAVASDWRVVVEERIRSKTQRLSKGGPRQGPAGSPSRFNSVAGHFFFPLLQRFDRPLVTFDLLGEDQLVLGRLAHTLGALMCLAVNTTVAVAMGKALLEFVWALRFHIDAYVRQGLLSAVSSVLLSLPAARLLEDLMDELLEARSWLADVAEKDPDEDCR 814 The following BLAST results are available for this feature:
BLAST of TCONS_00013787 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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