TCONS_00013785 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00013785
Unique Name	TCONS_00013785
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3240

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000173:396395..400486+

transcript sequence

>TCONS_00013785 ID=TCONS_00013785|Name=TCONS_00013785|organism=Clytia hemisphaerica|type=transcript|length=3240bp
tgccAAACGAAAACTTTTCTCTCAATCAAAATGTcatataaaataattcg
aatcCCCTTTTAAGAATTTCATGTAAAAATACATCTCGAAGCTTTCTCCC
ACACAACAGTTTCgaatttaacaaacttttaaaatcttattaaatcttaa
gaatttgaaactgaacaattaaaaataataattctaGGCATTtgatattc
aaaataaattcttcTTTTAGTTTCTTGTAAAGATAATTAACATTCAGTGC
CACGTCTGGGGCGCTGTTCCGCCGAACCAGATGTGCCTGGTAATTTATCA
TAAATGTTTCCGGTATTACCAGCGGGTTGAGTATCATTGGGTCCACACCC
GTATTTCGTCAAAATAAAGTTAATATTATCATAAAGTGTCTCCGATGATT
TTTGGGActcgttttcaaaatcattAATTGCTGAATCAGTAATTGTATCA
TTATTTTCATTGTCTGTTGTTGTATGGTTTGCCTCTGGTTGTTGATGATG
AATTCGGGGCGTATCGTAGAGTCCTGTAATTTGTGAAATGACCGGCGTTT
CAAAGCCAGGGACCTCATTTACAGGCGTTGCCGCAGGGTCAGTCATTCTA
GGTTTATCGTATACAACTTTATCGTCTCCAAACGACAGTTTCTTGGGAGT
TGTGTTCGTAAACGGCTCTTCCTCAATGTTTAACTGAAGCATTGATTTTC
GAGGTGAACTATACTCGGAAAGGCGTTTATCGCGTGGCGGTCCTTCACCA
TTGAGTACTGAGCTCGGGAGGGCGTATTCGCTCCCGTATTGACTACCACT
ACTCATTTTACTGTAGCCGTTTGAGTCTTCACTTTTGTCTGGTGAGAATT
GACTGGGACGTGATCCCCCGTGGAACGTCTGGCTACGTGGTAAATCGTAG
ATGCTTTTACGTCGATTTTTCTCTAAATCGATAACGTAAGGCATGTCGAA
ATCAGATACGGCACTATCAAGGCTATACGTGTGGGCTAGACTAGCATGCC
CGTTATCATACGTAGCACGGCTATCTAGAGACGTACATTCTGTTTCTGCG
CTGGCTCCCGAGTTACGTTTACGGTCTTCTACGTCATCCTCCACGTACTC
GTTTtcgaaaatatcttcaaatacaGGAACAGAACTGACCCTTGTTGGGG
GCGCGTTAACGGCGGCGAGACTTTCGGATATCCGGCGTTGTAACGTATTC
AATGGCATGTAACCTTTCTGTAACGTTTCGTCTGCGTGAGTATTGGTGAA
AGCATCGTAACCACTGAACGTATGCGATTTGTGTAGCCCTTGAGACGTGA
CCTGGGCTAACGTTTTCGGTTTTGGGATGATCGTGTCTTTACGGATACGG
CTCTTACGTTGCGTTTTGGCGGACGTGACTGGTTTCGGTTCCGGTTCGTT
GTTCGACATTGGATTCGTAGCTGAGGAACTTGATGGTATTTTTCGTTTCG
TCACCGTGTATTTAGCGACTTGATTTTTAGTACCATCTTCTATATCTGAG
CCGCAACAACAACACGAACAGCCGTTCCAATTCACGCATGCGTAGTAGGT
AATAAATATGATAACGACAATGACGAAAAGTCCTAACAAACCACTTGTGG
TGATGGcgatatttttataattttcatccTCCTTCTCGGTTGAACCAATA
ACGTTTGTGACTTCAACTTTTTTACCGAAATCTGTTACAAAGTTGGTAGA
CGCATAATCACCCTGTCCGAATTTGTTCACGTATCGAATTCGGACATCTG
TGATATCATTTATTGACAATCCGTCTCCCAACTGGTCTTGACATACCATG
AAATTGTTTGTGtaagttttgaataaaaagaaaggAGCGTTGTTCCTAAC
CAATTCAATATCGTAGGAAATAGGTAAACGGCAGTGATTAGGATTTAAGA
GTGGTCCCATCCATTGCGTGTGTAAACAATCCGATTCCGAAACCGTTCGA
ACGTCTGTAACCGGTTCGGGTTTAAATGAAACCGTTAAGGCAACTTTCCC
TTTAATCGGATTCGTTGCATCTCCATGGATTTCGTAGTTGGCGGTAAGAT
TACAAGGCTGTCGATACACTCTAGGTGTTGTATAAGAGTATTTATAACAG
TGTGTgttcaaagaaaatttctttgtaACGTGTTCAGACCTTAATCCGTG
TGTAGTGTTCACTATTACGCCATCTACATTTGTAGTGTTAGTTATTAAGG
TCCATTTTACACTTGGTTTCGGGTTTCCACAAACGACCATTTCGAAGGAT
GTTGTCCCAACTTCAGCTACAGTGACGGAATCGGGGAAACTTCGGGATAT
TAATAACGGCCCACCAATAACCTGTAAATCGACATCGGTTCGTTGAGTTG
AACCCGATCGGCAAGTATAAATTCCCGAATCGGAATAAGTCGTATTTGTT
AGGGTTATGGAGATAATGTTTGTTTGATAGCTAACGGTTAAGCGATGTTG
GTATATCTCCATAATATCAGGTTCCAATCTCAATATAGGTGTCCGAGTAC
CACTGGTCCAGTTACCCAATTTACGAATTTCCCCATTCGATATAAAGCTA
CAAATGACATTGTCTATTGTTTCAGTCTCGAGTTGGATCGTTAGAACAGC
GATTGAGCCACGACTGACAGATTCTTTTGAACGTTGAATATTAGCGGTGG
TGGTGGTCGTTTGAGTTTGTGTCAAATATACCAATGTCAAAAGTAATACG
ATTCTcattaaatatttttccattgtccgagatatttttttacttgtttc
ttTAAAATAGTTGTCTTTGAAATACGATAAGTCAAATTTTGTGAGACATT
TGTGATACAGTTGAGTTCTCTTCTCGTCTCGattgattatttcaaaaata
ttttattttcaataattctTTGAGACACAAAAACACGCCTTTTTCAGTAT
GTAGTATCAAAGAGTGTGTGCGTGTCCTATAGTAACACAgcgaaaataaa
aagaagagtcgcttcaaaaaattgacaaaaagtttGGTTGAATCAATAAC
AACAACATCAAGAACAAGAACAATAGAACGACTAATCAATTTCACTCTCG
TTCATCATGACAacatcatttttaatgactttgctattcttttttttgtt
aatGACTATACGCAATTACCTGCTCCTCGGCTTTTATTTCTATTGTTCAA
AACGTTTTTTAACTACCGTTTCGTAAATAGGAACTATCTAGTTATTGTTT
CAATATCAGAAAAGTCATTAACGAGAAAATTATTGAGATA

Run BLAST on NCBI

transcript from alignment at sc0000173:396395..400486+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00013785 ID=TCONS_00013785|Name=TCONS_00013785|organism=Clytia hemisphaerica|type=transcript|length=4092bp|location=Sequence derived from alignment at sc0000173:396395..400486+ (Clytia hemisphaerica)
tgccAAACGAAAACTTTTCTCTCAATCAAAATGTcatataaaataattcg
aatcCCCTTTTAAGAATTTCATGTAAAAATACATCTCGAAGCTTTCTCCC
ACACAACAGTTTCgaatttaacaaacttttaaaatcttattaaatcttaa
gaatttgaaactgaacaattaaaaataataattctaGGCATTtgatattc
aaaataaattcttcTTTTAGTTTCTTGTAAAGATAATTAACATTCAGTGC
CACGTCTGGGGCGCTGTTCCGCCGAACCAGATGTGCCTGGTAATTTATCA
TAAATGTTTCCGGTATTACCAGCGGGTTGAGTATCATTGGGTCCACACCC
GTATTTCGTCAAAATAAAGTTAATATTATCATAAAGTGTCTCCGATGATT
TTTGGGActcgttttcaaaatcattAATTGCTGAATCAGTAATTGTATCA
TTATTTTCATTGTCTGTTGTTGTATGGTTTGCCTCTGGTTGTTGATGATG
AATTCGGGGCGTATCGTAGAGTCCTGTAATTTGTGAAATGACCGGCGTTT
CAAAGCCAGGGACCTCATTTACAGGCGTTGCCGCAGGGTCAGTCATTCTA
GGTTTATCGTATACAACTTTATCGTCTCCAAACGACAGTTTCTTGGGAGT
TGTGTTCGTAAACGGCTCTTCCTCAATGTTTAACTGAAGCATTGATTTTC
GAGGTGAACTATACTCGGAAAGGCGTTTATCGCGTGGCGGTCCTTCACCA
TTGAGTACTGAGCTCGGGAGGGCGTATTCGCTCCCGTATTGACTACCACT
ACTCATTTTACTGTAGCCGTTTGAGTCTTCACTTTTGTCTGGTGAGAATT
GACTGGGACGTGATCCCCCGTGGAACGTCTGGCTACGTGGTAAATCGTAG
ATGCTTTTACGTCGATTTTTCTCTAAATCGATAACGTAAGGCATGTCGAA
ATCAGATACGGCACTATCAAGGCTATACGTGTGGGCTAGACTAGCATGCC
CGTTATCATACGTAGCACGGCTATCTAGAGACGTACATTCCGTTTCTGCG
CTGGCTCCCGAGTTACGTTTACGATCTTCTACGTCATCCTCCACGTACTC
GTTTtcgaaaatatcttcaaaaacgGGAACAGAACTGACCCTTGTTGGCG
GCGCGTTAACAGCGGCGAGACTTTCGGATATACGGCGTTGTAACGTATTC
AATGGCATGTATCCTTTCTGTAACGTTTCGTCTGCGTGAGGATTGGTGAA
AGCATCGTAACCACTGAAAGTGTGCGATTTGTGTAGCCCTTGAGACGTGA
CCTGAGCTAACGTTTTCGGTTTTGGGATGATCGTGTCTTTACGGATACGG
CTCTTACGTGGCGTTTTGGCGGACGTGACCGGTTTCGGTTCCGGTTCGTT
GTTCGACATTGGATTCGTAGCTGAGGAACTTGATGGTGTTTTTCGTTTCG
TGTATTTAGCGACTTGATTTTTAGTACCATCTTCTATATCTGAGCCGCAA
CAACAACACGAGCATCCGTTCCAATTCACGCATGCGTAGTAGGTAATAAA
TATGATAATNCTATACTCGGAAAGGCGTTTATCGCGTGGCGGTCCTTCAC
CATTGAGTACTGAGCTCGGGAGGGCGTATTCGCTCCCGTATTGACTACCA
CTACCCATTTTACTGTAGCCGTTTGAGTCTTCACTTTTGTCTGGTGAGAA
TTGACTGGGACGTGATCCCCCGTGGAACGTCTGGCTACGTGGTAAGTCGT
AGATGCTTTTACGTCGATTTTTCTCTAAATCGATAACGTAAGGCATGTCG
AAATCAGATACGGCGCTATCAAGGCTATACGTGTGGGCTAGACTAGCATG
CCCGTTATCATACGTAGCACGGCTATCAAGGGACGTACATTCTGTTTCTG
CGCTGGCTCCCGAGTTACGTTTACGGTCTTCTACGTCATCCTCCACGTAC
TCGTTTtcgaaaatatcttcaaatacaGGAACAGAACTGACCCTTGTTGG
GGGCGCGTTAACGGCGGCGAGACTTTCGGATATCCGGCGTTGTAACGTAT
TCAATGGCATGTAACCTTTCTGTAACGTTTCGTCTGCGTGAGTATTGGTG
AAAGCATCGTAACCACTGAACGTATGCGATTTGTGTAGCCCTTGAGACGT
GACCTGGGCTAACGTTTTCGGTTTTGGGATGATCGTGTCTTTACGGATAC
GGCTCTTACGTTGCGTTTTGGCGGACGTGACTGGTTTCGGTTCCGGTTCG
TTGTTCGACATTGGATTCGTAGCTGAGGAACTTGATGGTATTTTTCGTTT
CGTCACCGTGTATTTAGCGACTTGATTTTTAGTACCATCTTCTATATCTG
AGCCGCAACAACAACACGAACAGCCGTTCCAATTCACGCATGCGTAGTAG
GTAATAAATATGATAACGACAATGACGAAAAGTCCTAACAAACCACTTGT
GGTGATGGcgatatttttataattttcatccTCCTTCTCGGTTGAACCAA
TAACGTTTGTGACTTCAACTTTTTTACCGAAATCTGTTACAAAGTTGGTA
GACGCATAATCACCCTGTCCGAATTTGTTCACGTATCGAATTCGGACATC
TGTGATATCATTTATTGACAATCCGTCTCCCAACTGGTCTTGACATACCA
TGAAATTGTTTGTGtaagttttgaataaaaagaaaggAGCGTTGTTCCTA
ACCAATTCAATATCGTAGGAAATAGGTAAACGGCAGTGATTAGGATTTAA
GAGTGGTCCCATCCATTGCGTGTGTAAACAATCCGATTCCGAAACCGTTC
GAACGTCTGTAACCGGTTCGGGTTTAAATGAAACCGTTAAGGCAACTTTC
CCTTTAATCGGATTCGTTGCATCTCCATGGATTTCGTAGTTGGCGGTAAG
ATTACAAGGCTGTCGATACACTCTAGGTGTTGTATAAGAGTATTTATAAC
AGTGTGTgttcaaagaaaatttctttgtaACGTGTTCAGACCTTAATCCG
TGTGTAGTGTTCACTATTACGCCATCTACATTTGTAGTGTTAGTTATTAA
GGTCCATTTTACACTTGGTTTCGGGTTTCCACAAACGACCATTTCGAAGG
ATGTTGTCCCAACTTCAGCTACAGTGACGGAATCGGGGAAACTTCGGGAT
ATTAATAACGGCCCACCAATAACCTGTAAATCGACATCGGTTCGTTGAGT
TGAACCCGATCGGCAAGTATAAATTCCCGAATCGGAATAAGTCGTATTTG
TTAGGGTTATGGAGATAATGTTTGTTTGATAGCTAACGGTTAAGCGATGT
TGGTATATCTCCATAATATCAGGTTCCAATCTCAATATAGGTGTCCGAGT
ACCACTGGTCCAGTTACCCAATTTACGAATTTCCCCATTCGATATAAAGC
TACAAATGACATTGTCTATTGTTTCAGTCTCGAGTTGGATCGTTAGAACA
GCGATTGAGCCACGACTGACAGATTCTTTTGAACGTTGAATATTAGCGGT
GGTGGTGGTCGTTTGAGTTTGTGTCAAATATACCAATGTCAAAAGTAATA
CGATTCTcattaaatatttttccattgtccgagatatttttttacttgtt
tcttTAAAATAGTTGTCTTTGAAATACGATAAGTCAAATTTTGTGAGACA
TTTGTGATACAGTTGAGTTCTCTTCTCGTCTCGattgattatttcaaaaa
tattttattttcaataattctTTGAGACACAAAAACACGCCTTTTTCAGT
ATGTAGTATCAAAGAGTGTGTGCGTGTCCTATAGTAACACAgcgaaaata
aaaagaagagtcgcttcaaaaaattgacaaaaagtttGGTTGAATCAATA
ACAACAACATCAAGAACAAGAACAATAGAACGACTAATCAATTTCACTCT
CGTTCATCATGACAacatcatttttaatgactttgctattcttttttttg
ttaatGACTATACGCAATTACCTGCTCCTCGGCTTTTATTTCTATTGTTC
AAAACGTTTTTTAACTACCGTTTCGTAAATAGGAACTATCTAGTTATTGT
TTCAATATCAGAAAAGTCATTAACGAGAAAATTATTGAGATA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_007695	XLOC_007695	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00013785-exon-sc0000173-1491911889:396395..397430	TCONS_00013785-exon-sc0000173-1491911889:396395..397430	Clytia hemisphaerica	exon
TCONS_00013785-exon-sc0000173-1510915933:396395..397430	TCONS_00013785-exon-sc0000173-1510915933:396395..397430	Clytia hemisphaerica	exon
TCONS_00013785-exon-sc0000173-1575043694:396395..397430	TCONS_00013785-exon-sc0000173-1575043694:396395..397430	Clytia hemisphaerica	exon
TCONS_00013785-exon-sc0000173-1491911889:398283..400486	TCONS_00013785-exon-sc0000173-1491911889:398283..400486	Clytia hemisphaerica	exon
TCONS_00013785-exon-sc0000173-1510915933:398283..400486	TCONS_00013785-exon-sc0000173-1510915933:398283..400486	Clytia hemisphaerica	exon
TCONS_00013785-exon-sc0000173-1575043694:398283..400486	TCONS_00013785-exon-sc0000173-1575043694:398283..400486	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000173	supercontig	sc0000173:396395..400486 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000421636	0.00134145	0.00127192	0.0648298	0.126278	0	0	0	0	0.00206205	0	0	2.40605	1.52843	2.10213	1.81152	0.780851	1.78427	0.111984	0	0	0.00127787	0	0.036604	0.00456163	0.00203947	0	0.000641023	0	0.108511

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR013783	Ig-like_fold
IPR007110	Ig-like_dom

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00013785 vs. Swiss-Prot (Human)

BLAST of TCONS_00013785 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00013785 (transcript) - C. hemisphaerica