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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013775 ID=TCONS_00013775|Name=TCONS_00013775|organism=Clytia hemisphaerica|type=transcript|length=2186bp
gggcacagttgaatttcaatttgaatgtggtgttttctttttgtgtttgt
tgtttttatataCAGAATCTgtcattttttatttacatttttatttgtaa
tatacaataatataatatataaattatAAAAAGCTCTTTCTAATTACCCT
ACCAATATACTACTATACTACACTAATTATAAATATACTGTAATCTTATT
ATAAAATTGCTTCATCTATAATACTTTTTCATTTCTTATATTAGCATCTG
TTTCCCGAAGATTTGAAATACTTTTCCGTAAAAGAAATAACTGAAGACAt
aaatttttgaggaaattgtAAAATGCTCGAAATGAACGGCAAAATATTAG
CTTCAAAATAGAAacattttcggaaaaaaactttgttttgaatttatagA
TTTTTCCAAATTGGAAACACGTCaaagttgaataaaaacaaggctATACT
ATAGTAAAataattcataaaaattttaacaaaaattatcacaattttcaa
tcagccatgaaaaagtgaccctttccaatattttttgttcGATAAGATAT
GCTATTAAAAATTTCGCGCTCGTAAATCGAGGTTGAGTTGGATCTGTAAA
GTCTAAACAAAATCTGTTATTTTGACATGGAAACGAGGCTGGAATGATGT
CATCATTGATACGATAGGTTAGACTGTATACCACATCACCATAACTGTCA
ACACGGGCTAAAATAGTACCGCATTTAGCCTGTAAAAGGTCTTTATCTTC
AATATCTGTAAAATCAACATCAAATTCTCCATAATACCATACGTTTTGAG
AAAATGAAACATCGTCAAGTTCAACTAAGTTTTCATCGAGTTTTTCACGA
TTTAAGGAGACGTCTAGAGTACTTGTTGTTTTATCCTctgtttcactttc
gtttaatGTGTTATTTCCATCAAAGATGTCAAGATCTAAGTTTTTTCTGG
ATGTGAATTCATTCGACTTTCGACGTTTTCGAAGACTATAATATTTCTTT
GCTGGTTCTTTTAAACTATGACTTATAGTTTCAGAGATGTTTGAATAACG
TCGGTGAGCTGTATTATTTGTATTGCGAAGTGTTGTCGCGAGTTTATCGA
TGACTTGATTAAACGATTTCATTTCGTCGGGTGAGAAACAAGCACCaaaa
tcgatatactcgattgggCTCGAATTCTTCGATTCCGATGTTTTCCTTTG
AAGGCTTGGTGTCGAGAGCTTTCTTAAAGGAGCTGGAGTAGAAAGCTTAC
GTAATGGAGTTGGTAGATCACTGAGGCGTTGCCGGAATTCTGTTGATATG
CGTCTACGCCTGCTCGATGTTTCCGGTTGCTTGTTTATTGGAGTCGATGG
AAAATCgaattcttttttattctcGTCGGTTGGAGTTGGAGTCGATAAAC
TTTTAGTACGTTTATGTTTCTTTGTGCTTGTGGTGGTTGTTGTCGAACTA
ATCGATAAAGCATGCGATTGTTGAACTTGTTCTCGAAGTGTATCGATTAA
ATCGTCtgattttggtaaattttcttcaagatgttgtaatttctttgaaa
attctttattcCACGAATGCAAACGTTTTAAGTTCGATTTTCTTGTATTT
CCAGTTAAACTCAAATTGTTCGAATTACAATCGTGTATAATTTTCTTGGT
TGCTGGCTTGTGTTCAGTATATAAACAAAATCCTTGAAGTTTGATATTTA
TATCTTCAATAAACGGGTCAAACTGACGATCATATGAAATGCTCTTCGAC
TTTCGAACACTTTTCGTGATATCAAATTTACGTTCACTGTTGCCTCCACT
CTTAGCGAGTGTAACTAAATTTTTCATGTCGATTTCAAAACACAAATCGA
TATTTATATTAACAATTGCTATACTTCACAACCacaacaaaaacaattaa
aaacagTCGTTAATTTATTCCGCTCCAATGCGTCTCTAAGTACGTCAATA
ATCTTATTTCTTTTGTCcttaaaaagaaagcaaaaagacAATTAGTACAT
TATAAATTGAACAATAGAAGGACAATTAAAATATAGTATGTAACATTGTC
ATATTGTAACCTATCGATACGACCTCTTTAGAAGCTGGTCGCGTGCGTTT
CTTTCTCGTCCATATGAGATTTCGTAAAAGCCTCAGTCAGGTACTTAACC
CTCGATTGACTTTTTGAATGCTGATGTATGAAAAAC Run BLAST on NCBI transcript from alignment at sc0000173:244085..246329+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013775 ID=TCONS_00013775|Name=TCONS_00013775|organism=Clytia hemisphaerica|type=transcript|length=2245bp|location=Sequence derived from alignment at sc0000173:244085..246329+ (Clytia hemisphaerica)
gggcacagttgaatttcaatttgaatgtggtgttttctttttgtgtttgt
tgtttttatataCAGAATCTgtcattttttatttacatttttatttgtaa
tatacaataatataatatataaattatAAAAAGCTCTTTCTAATTACCCT
ACCAATATACTACTATACTACACTAATTATAAATATACTGTAATCTTATT
ATAAAATTGCTTCATCTATAATACTTTTTCATTTCTTATATTAGCATCTG
TTTCCCGAAGATTTGAAATACTTTTCCGTAAAAGAAATAACTGAAGACAt
aaatttttgaggaaattgtAAAATGCTCGAAATGAACGGCAAAATATTAG
CTTCAAAATAGAAacattttcggaaaaaaactttgttttgaatttatagA
TTTTTCCAAATTGGAAACACGTCaaagttgaataaaaacaaggctATACT
AtagtaaaataatttataaaaattcNCACGTCGaagttgaataaaaacaa
ggctATACTATAGTAAAataattcataaaaattttaacaaaaattatcac
aattttcaatcagccatgaaaaagtgaccctttccaatattttttgttcG
ATAAGATATGCTATTAAAAATTTCGCGCTCGTAAATCGAGGTTGAGTTGG
ATCTGTAAAGTCTAAACAAAATCTGTTATTTTGACATGGAAACGAGGCTG
GAATGATGTCATCATTGATACGATAGGTTAGACTGTATACCACATCACCA
TAACTGTCAACACGGGCTAAAATAGTACCGCATTTAGCCTGTAAAAGGTC
TTTATCTTCAATATCTGTAAAATCAACATCAAATTCTCCATAATACCATA
CGTTTTGAGAAAATGAAACATCGTCAAGTTCAACTAAGTTTTCATCGAGT
TTTTCACGATTTAAGGAGACGTCTAGAGTACTTGTTGTTTTATCCTctgt
ttcactttcgtttaatGTGTTATTTCCATCAAAGATGTCAAGATCTAAGT
TTTTTCTGGATGTGAATTCATTCGACTTTCGACGTTTTCGAAGACTATAA
TATTTCTTTGCTGGTTCTTTTAAACTATGACTTATAGTTTCAGAGATGTT
TGAATAACGTCGGTGAGCTGTATTATTTGTATTGCGAAGTGTTGTCGCGA
GTTTATCGATGACTTGATTAAACGATTTCATTTCGTCGGGTGAGAAACAA
GCACCaaaatcgatatactcgattgggCTCGAATTCTTCGATTCCGATGT
TTTCCTTTGAAGGCTTGGTGTCGAGAGCTTTCTTAAAGGAGCTGGAGTAG
AAAGCTTACGTAATGGAGTTGGTAGATCACTGAGGCGTTGCCGGAATTCT
GTTGATATGCGTCTACGCCTGCTCGATGTTTCCGGTTGCTTGTTTATTGG
AGTCGATGGAAAATCgaattcttttttattctcGTCGGTTGGAGTTGGAG
TCGATAAACTTTTAGTACGTTTATGTTTCTTTGTGCTTGTGGTGGTTGTT
GTCGAACTAATCGATAAAGCATGCGATTGTTGAACTTGTTCTCGAAGTGT
ATCGATTAAATCGTCtgattttggtaaattttcttcaagatgttgtaatt
tctttgaaaattctttattcCACGAATGCAAACGTTTTAAGTTCGATTTT
CTTGTATTTCCAGTTAAACTCAAATTGTTCGAATTACAATCGTGTATAAT
TTTCTTGGTTGCTGGCTTGTGTTCAGTATATAAACAAAATCCTTGAAGTT
TGATATTTATATCTTCAATAAACGGGTCAAACTGACGATCATATGAAATG
CTCTTCGACTTTCGAACACTTTTCGTGATATCAAATTTACGTTCACTGTT
GCCTCCACTCTTAGCGAGTGTAACTAAATTTTTCATGTCGATTTCAAAAC
ACAAATCGATATTTATATTAACAATTGCTATACTTCACAACCacaacaaa
aacaattaaaaacagTCGTTAATTTATTCCGCTCCAATGCGTCTCTAAGT
ACGTCAATAATCTTATTTCTTTTGTCcttaaaaagaaagcaaaaagacAA
TTAGTACATTATAAATTGAACAATAGAAGGACAATTAAAATATAGTATGT
AACATTGTCATATTGTAACCTATCGATACGACCTCTTTAGAAGCTGGTCG
CGTGCGTTTCTTTCTCGTCCATATGAGATTTCGTAAAAGCCTCAGTCAGG
TACTTAACCCTCGATTGACTTTTTGAATGCTGATGTATGAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013775-exon-sc0000173-1491911889:244085..244526 | TCONS_00013775-exon-sc0000173-1491911889:244085..244526 | Clytia hemisphaerica | exon |
| TCONS_00013775-exon-sc0000173-1510915933:244085..244526 | TCONS_00013775-exon-sc0000173-1510915933:244085..244526 | Clytia hemisphaerica | exon |
| TCONS_00013775-exon-sc0000173-1575043694:244085..244526 | TCONS_00013775-exon-sc0000173-1575043694:244085..244526 | Clytia hemisphaerica | exon |
| TCONS_00013775-exon-sc0000173-1491911889:244586..246329 | TCONS_00013775-exon-sc0000173-1491911889:244586..246329 | Clytia hemisphaerica | exon |
| TCONS_00013775-exon-sc0000173-1510915933:244586..246329 | TCONS_00013775-exon-sc0000173-1510915933:244586..246329 | Clytia hemisphaerica | exon |
| TCONS_00013775-exon-sc0000173-1575043694:244586..246329 | TCONS_00013775-exon-sc0000173-1575043694:244586..246329 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000173 | supercontig | sc0000173:244085..246329 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000980 | SH2 |
Blast
The following BLAST results are available for this feature:
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