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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013774 ID=TCONS_00013774|Name=TCONS_00013774|organism=Clytia hemisphaerica|type=transcript|length=2313bpRun BLAST on NCBI protein sequence of TCONS_00013774-protein >TCONS_00013774-protein ID=TCONS_00013774-protein|Name=TCONS_00013774-protein|organism=Clytia hemisphaerica|type=polypeptide|length=605bp MLRIIPEVVIRLSRPVFVSKTLLPLRALNRGFSLKSPILIHYLEKPSLKFRun BLAST on NCBI transcript from alignment at sc0000173:197438..216760+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013774 ID=TCONS_00013774|Name=TCONS_00013774|organism=Clytia hemisphaerica|type=transcript|length=19323bp|location=Sequence derived from alignment at sc0000173:197438..216760+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000173:197438..216760+ >TCONS_00013774 ID=TCONS_00013774|Name=TCONS_00013774|organism=Clytia hemisphaerica|type=CDS|length=29088bp|location=Sequence derived from alignment at sc0000173:197438..216760+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013774 vs. Swiss-Prot (Human)
Match: SYNC (Asparagine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=NARS PE=1 SV=1) HSP 1 Score: 773.467 bits (1996), Expect = 0.000e+0 Identity = 349/547 (63.80%), Postives = 446/547 (81.54%), Query Frame = 1
Query: 511 MAPIYTSDKNGNDETGDGSEAKPFKTVLRAMHHVGAEPFPQIMVDTKDPEKAGFDIIAKAQLKKMTKLFGQEKRKMENQKKQEAEKAAQHEKNLEEAKKITIEEDKSLPAAKKIKLRVAKDHRDQRIKVYGWVHRLRQQGKNLMFIVLRDGTGFLQCVLADKLCQTYNAVRLTTESSVCLYGTLQAVPEGKSAPGGHELIVDYWEVVGFAPPGGADLVVNETSSVDTLLDQRHLALRGEFLSKIMRVRSRVTQCFRDHYFARGYTEMCPPTMVQTQCEGGSTLFKFDYFGEPAYLTQSSQLYLETACPAVGDVFCVAQSYRAETSRTRRHLAEYTHIEGECPFIDFEELLNNIEDLVCDVVDRFLKSPEGELMKDLNPDFKAPKRPFKRMDYAEAIEWLRKDGFKKDDGTFYEFGEDIPEMPERRMTDVIGEPILLTRFPADVKAFYMRKDQNNPKVVEAVDVLMPGVGEILGGSMRMDDEAELMEAFAKQKLNPAPYYWYTDQRKYGTCPHGGYGLGLDRFVTWLTNRYHIRDVCFYPRFIGRCTP 2151
+A +Y SD+ G+D TGDG++ KPFKT L+A+ VG EPFP I VD++ E +++I+K+QLK + K++ +E+ K E+++K+EAE + + EKNLEEAKKITI+ D SLP K +K+ + +R QR+KV+GWVHRLR+QGKNLMF+VLRDGTG+LQCVLAD+LCQ YN V L+TESSV +YG L P+GK APGGHEL D+WE++G AP GGAD ++NE S VD L+ RH+ +RGE +SKI++ RS VT+CFRDH+F RGY E+ PPT+VQTQ EGG+TLFK DYFGE A+LTQSSQLYLET PA+GDVFC+AQSYRAE SRTRRHLAEYTH+E ECPF+ F++LLN +EDLVCDVVDR LKSP G ++ +LNP+F+ PKRPFKRM+Y++AI WL++ KK+DGTFYEFGEDIPE PER MTD I EPILL RFP ++K+FYM++ + ++ E+VDVLMP VGEI+GGSMR+ D E++ + ++ ++P PYYWYTDQRKYGTCPHGGYGLGL+RF+TW+ NRYHIRDVC YPRF+ RCTP
Sbjct: 3 LAELYVSDREGSDATGDGTKEKPFKTGLKALMTVGKEPFPTIYVDSQK-ENERWNVISKSQLKNIKKMWHREQMKSESREKKEAEDSLRREKNLEEAKKITIKNDPSLPEPKCVKIGALEGYRGQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLADELCQCYNGVLLSTESSVAVYGMLNLTPKGKQAPGGHELSCDFWELIGLAPAGGADNLINEESDVDVQLNNRHMMIRGENMSKILKARSMVTRCFRDHFFDRGYYEVTPPTLVQTQVEGGATLFKLDYFGEEAFLTQSSQLYLETCLPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFLTFDDLLNRLEDLVCDVVDRILKSPAGSIVHELNPNFQPPKRPFKRMNYSDAIVWLKEHDVKKEDGTFYEFGEDIPEAPERLMTDTINEPILLCRFPVEIKSFYMQRCPEDSRLTESVDVLMPNVGEIVGGSMRIFDSEEILAGYKREGIDPTPYYWYTDQRKYGTCPHGGYGLGLERFLTWILNRYHIRDVCLYPRFVQRCTP 548 The following BLAST results are available for this feature:
BLAST of TCONS_00013774 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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