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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013744 ID=TCONS_00013744|Name=TCONS_00013744|organism=Clytia hemisphaerica|type=transcript|length=880bp
AAGCAGGGAATGATGATTTGGTTATTATTGTTAAGATATTACTAATTGAT
TAATCACGTGTAATTTGAATTTTCCCTATTTGGTAGAAATTAATTCATAT
TATTAAATTTCAGTAAAAATGTTACAAAGTAGAATAATATCTTCACTATC
AAGTTGTAGTAATGCTCTACAATGTTGCCGTACTTTGCATGTGTCCTTGG
TTGTCAACCATAATCCTGGTCTAAAAAAGAAATCCAAAGTTGCTGTTGAT
CCTAAAAAACTtcaaagacaaaaagaacgcCAAGAAGCAAAACTACGAAA
ACAAGTCATTCAGCCACCAATGGATCCCGACTCAATCCCAGACCCTTTAT
GGTTTAATGAGGATAGACAGCGACCAAAACTTCAACTGTCAGAGGAAGAA
ACAGAACAAAGAGTACTGTTAcaaaaaaattggtcaaaataccAAATGCG
GAAACATGTTGATGATTTAAGACTGATGAGAAATAAGTTGAAGTGTCGAA
ATGATGCTTTACGTGAACTGAAAAAGGagtctgaatttttgtacaatgaa
GCACTTAAAGTTGATAAAGTGAACTTTCCAATCACATTGAAAGGTCCAAT
GGAAACACCACCCCTTGCTGATTATCTGCCACCTGATTTTGTGgatgaaa
aatgattttatttttctttatagattttatttttcttttttgctaaaaat
gattaagaatttattttttttcggatGATAAGAAGAAAGTTCGTTTTTTG
TCTTATCTATAGATTTGTCAAATCATTCCTTGTAATTTGTCCCTGGAAAG
CTTTGTTTGCAATCAATCTTATATCTACAATCGGTGACGAAATACTTGGC
ACGAAaaggaaatccaccggggtgttttga Run BLAST on NCBI protein sequence of TCONS_00013744-protein >TCONS_00013744-protein ID=TCONS_00013744-protein|Name=TCONS_00013744-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
MLQSRIISSLSSCSNALQCCRTLHVSLVVNHNPGLKKKSKVAVDPKKLQR
QKERQEAKLRKQVIQPPMDPDSIPDPLWFNEDRQRPKLQLSEEETEQRVL
LQKNWSKYQMRKHVDDLRLMRNKLKCRNDALRELKKESEFLYNEALKVDK
VNFPITLKGPMETPPLADYLPPDFVDEK Run BLAST on NCBI transcript from alignment at sc0000171:178373..179252 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013744 ID=TCONS_00013744|Name=TCONS_00013744|organism=Clytia hemisphaerica|type=transcript|length=880bp|location=Sequence derived from alignment at sc0000171:178373..179252 (Clytia hemisphaerica)
tcaaaacaccccggtggatttccttTTCGTGCCAAGTATTTCGTCACCGA
TTGTAGATATAAGATTGATTGCAAACAAAGCTTTCCAGGGACAAATTACA
AGGAATGATTTGACAAATCTATAGATAAGACAAAAAACGAACTTTCTTCT
TATCatccgaaaaaaaataaattcttaatcatttttagcaaaaaagaaaa
ataaaatctataaagaaaaataaaatcatttttcatcCACAAAATCAGGT
GGCAGATAATCAGCAAGGGGTGGTGTTTCCATTGGACCTTTCAATGTGAT
TGGAAAGTTCACTTTATCAACTTTAAGTGCttcattgtacaaaaattcag
actCCTTTTTCAGTTCACGTAAAGCATCATTTCGACACTTCAACTTATTT
CTCATCAGTCTTAAATCATCAACATGTTTCCGCATTTggtattttgacca
atttttttgTAACAGTACTCTTTGTTCTGTTTCTTCCTCTGACAGTTGAA
GTTTTGGTCGCTGTCTATCCTCATTAAACCATAAAGGGTCTGGGATTGAG
TCGGGATCCATTGGTGGCTGAATGACTTGTTTTCGTAGTTTTGCTTCTTG
gcgttctttttgtctttgaAGTTTTTTAGGATCAACAGCAACTTTGGATT
TCTTTTTTAGACCAGGATTATGGTTGACAACCAAGGACACATGCAAAGTA
CGGCAACATTGTAGAGCATTACTACAACTTGATAGTGAAGATATTATTCT
ACTTTGTAACATTTTTACTGAAATTTAATAATATGAATTAATTTCTACCA
AATAGGGAAAATTCAAATTACACGTGATTAATCAATTAGTAATATCTTAA
CAATAATAACCAAATCATCATTCCCTGCTT Coding sequence (CDS) from alignment at sc0000171:178373..179252 >TCONS_00013744 ID=TCONS_00013744|Name=TCONS_00013744|organism=Clytia hemisphaerica|type=CDS|length=537bp|location=Sequence derived from alignment at sc0000171:178373..179252 (Clytia hemisphaerica)
tcatttttcatcCACAAAATCAGGTGGCAGATAATCAGCAAGGGGTGGTG
TTTCCATTGGACCTTTCAATGTGATTGGAAAGTTCACTTTATCAACTTTA
AGTGCttcattgtacaaaaattcagactCCTTTTTCAGTTCACGTAAAGC
ATCATTTCGACACTTCAACTTATTTCTCATCAGTCTTAAATCATCAACAT
GTTTCCGCATTTggtattttgaccaatttttttgTAACAGTACTCTTTGT
TCTGTTTCTTCCTCTGACAGTTGAAGTTTTGGTCGCTGTCTATCCTCATT
AAACCATAAAGGGTCTGGGATTGAGTCGGGATCCATTGGTGGCTGAATGA
CTTGTTTTCGTAGTTTTGCTTCTTGgcgttctttttgtctttgaAGTTTT
TTAGGATCAACAGCAACTTTGGATTTCTTTTTTAGACCAGGATTATGGTT
GACAACCAAGGACACATGCAAAGTACGGCAACATTGTAGAGCATTACTAC
AACTTGATAGTGAAGATATTATTCTACTTTGTAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013744-exon-sc0000171-1491911889:178373..179252 | TCONS_00013744-exon-sc0000171-1491911889:178373..179252 | Clytia hemisphaerica | exon |
| TCONS_00013744-exon-sc0000171-1510915933:178373..179252 | TCONS_00013744-exon-sc0000171-1510915933:178373..179252 | Clytia hemisphaerica | exon |
| TCONS_00013744-exon-sc0000171-1575043694:178373..179252 | TCONS_00013744-exon-sc0000171-1575043694:178373..179252 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000171 | supercontig | sc0000171:178373..179252 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR019192 | Ribosomal_L28/L40_mit |
Blast
The following BLAST results are available for this feature:
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