TCONS_00013743 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013743
Unique NameTCONS_00013743
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length673

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013743 ID=TCONS_00013743|Name=TCONS_00013743|organism=Clytia hemisphaerica|type=transcript|length=673bp
GTATTACGTCATAATGAAACACATATACATCAAGACACGTCTACTAGAAA
TAAAAGACAATCTCCCCCAGGTGGAGGTTACAATCCTAGCCTACTGTCCA
ATCAAAACCCAGCTAATTTTGGATTAACCAATGGAAATACAGCTAATCTT
GGATTAACCAATCAATTTACATCCTCAAATGCACCGCCATCCAGTAGTAA
TGATGATGCTGAGTTACGTCACAGGCTATTGATGACGTTGGAGAACAGGC
TACAAGAACGTAACATGCTTTTACACGATAACGAGTTATTACGTGAAAAA
GAACTCTTACGAGAAAAAGAAATGAATAGCCTGTTGACTTCGCATCCTTC
TCTTCTCTCTGGCGGAGGGAACTCACTTTTAGGAGATAGCCTAACAGCTA
GTCGTAAATCAATAATTGAAAATAATGGTTTGTTTTCGAAACCTCTTAAC
AACGGATTACCGAATAATTTTGATTCTAACACAAATAATTTGCTTAACAG
TCATAACTTATTGGAGAATAACCTAATGAATCCTGCAGGCGGCTCCTTAA
ATGAAGAGGAACGCCTCTTAGCATCCGAACGGAGCCAGTTAGGGATGCCG
GGCGTTGGTAACCTTGGAGACGAGGCGGCACCCTTCGGATCGCTTGGTTT
GAGCAAATCAGGATATATTCCCG
Run BLAST on NCBI

protein sequence of TCONS_00013743-protein

>TCONS_00013743-protein ID=TCONS_00013743-protein|Name=TCONS_00013743-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
VLRHNETHIHQDTSTRNKRQSPPGGGYNPSLLSNQNPANFGLTNGNTANL
GLTNQFTSSNAPPSSSNDDAELRHRLLMTLENRLQERNMLLHDNELLREK
ELLREKEMNSLLTSHPSLLSGGGNSLLGDSLTASRKSIIENNGLFSKPLN
NGLPNNFDSNTNNLLNSHNLLENNLMNPAGGSLNEEERLLASERSQLGMP
GVGNLGDEAAPFGSLGLSKSGYIP
Run BLAST on NCBI

transcript from alignment at sc0000171:151947..152619

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013743 ID=TCONS_00013743|Name=TCONS_00013743|organism=Clytia hemisphaerica|type=transcript|length=673bp|location=Sequence derived from alignment at sc0000171:151947..152619 (Clytia hemisphaerica)
CGGGAATATATCCTGATTTGCTCAAACCAAGCGATCCGAAGGGTGCCGCC
TCGTCTCCAAGGTTACCAACGCCCGGCATCCCTAACTGGCTCCGTTCGGA
TGCTAAGAGGCGTTCCTCTTCATTTAAGGAGCCGCCTGCAGGATTCATTA
GGTTATTCTCCAATAAGTTATGACTGTTAAGCAAATTATTTGTGTTAGAA
TCAAAATTATTCGGTAATCCGTTGTTAAGAGGTTTCGAAAACAAACCATT
ATTTTCAATTATTGATTTACGACTAGCTGTTAGGCTATCTCCTAAAAGTG
AGTTCCCTCCGCCAGAGAGAAGAGAAGGATGCGAAGTCAACAGGCTATTC
ATTTCTTTTTCTCGTAAGAGTTCTTTTTCACGTAATAACTCGTTATCGTG
TAAAAGCATGTTACGTTCTTGTAGCCTGTTCTCCAACGTCATCAATAGCC
TGTGACGTAACTCAGCATCATCATTACTACTGGATGGCGGTGCATTTGAG
GATGTAAATTGATTGGTTAATCCAAGATTAGCTGTATTTCCATTGGTTAA
TCCAAAATTAGCTGGGTTTTGATTGGACAGTAGGCTAGGATTGTAACCTC
CACCTGGGGGAGATTGTCTTTTATTTCTAGTAGACGTGTCTTGATGTATA
TGTGTTTCATTATGACGTAATAC

Coding sequence (CDS) from alignment at sc0000171:151947..152619

>TCONS_00013743 ID=TCONS_00013743|Name=TCONS_00013743|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at sc0000171:151947..152619 (Clytia hemisphaerica)
GGGAATATATCCTGATTTGCTCAAACCAAGCGATCCGAAGGGTGCCGCCT
CGTCTCCAAGGTTACCAACGCCCGGCATCCCTAACTGGCTCCGTTCGGAT
GCTAAGAGGCGTTCCTCTTCATTTAAGGAGCCGCCTGCAGGATTCATTAG
GTTATTCTCCAATAAGTTATGACTGTTAAGCAAATTATTTGTGTTAGAAT
CAAAATTATTCGGTAATCCGTTGTTAAGAGGTTTCGAAAACAAACCATTA
TTTTCAATTATTGATTTACGACTAGCTGTTAGGCTATCTCCTAAAAGTGA
GTTCCCTCCGCCAGAGAGAAGAGAAGGATGCGAAGTCAACAGGCTATTCA
TTTCTTTTTCTCGTAAGAGTTCTTTTTCACGTAATAACTCGTTATCGTGT
AAAAGCATGTTACGTTCTTGTAGCCTGTTCTCCAACGTCATCAATAGCCT
GTGACGTAACTCAGCATCATCATTACTACTGGATGGCGGTGCATTTGAGG
ATGTAAATTGATTGGTTAATCCAAGATTAGCTGTATTTCCATTGGTTAAT
CCAAAATTAGCTGGGTTTTGATTGGACAGTAGGCTAGGATTGTAACCTCC
ACCTGGGGGAGATTGTCTTTTATTTCTAGTAGACGTGTCTTGATGTATAT
GTGTTTCATTATGACGTAATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007673XLOC_007673Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013743-exon-sc0000171-1491911889:151947..152619TCONS_00013743-exon-sc0000171-1491911889:151947..152619Clytia hemisphaericaexon
TCONS_00013743-exon-sc0000171-1510915933:151947..152619TCONS_00013743-exon-sc0000171-1510915933:151947..152619Clytia hemisphaericaexon
TCONS_00013743-exon-sc0000171-1575043694:151947..152619TCONS_00013743-exon-sc0000171-1575043694:151947..152619Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013743-proteinTCONS_00013743-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000171supercontigsc0000171:151947..152619 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.543789	0.318451	0.121495	0	3.15137	7.56852	1.94663	3.08566	3.40791	1.68307	5.66751	3.1869	3.70497	12.3706	6.47453	5.53519	0.116224	0	6.35396	6.5745	1.54211	4.35147	1.84203	3.41943	0.846227	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013743 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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