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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013736 ID=TCONS_00013736|Name=TCONS_00013736|organism=Clytia hemisphaerica|type=transcript|length=621bp
cttaaaatcttGTCGATCAAAAGTTTAAGACCTGATTTTGAAGATACCAA
ACAAAATTAGTCTCTTTTTAAAGACGACCAATTTGAGCATCATTGAATTT
GATTGGCTCTTTACAACAAAAGAATTGGTTTTTATtggtcaaaaaaagaa
caatatgAACCCACTCCATTGTTTAAGCTTCTTCTGGCTGATGTTGGTGC
TATGTTATGGCGCACCAACAAacACAAACATCAAAGATGAAAGCGACGAA
ACTATAAAATTGCTGGAAAGTAAAGATTTAGCGGTTGTGAAATTCTACAG
TGATTCGTGTGTCCATTGCAAAACCACAAGCGAATCCTTCTTAGAAGCTT
CcaaaaagatcaaagaatcaaaCCCGAATATCACCATACTTGAAGTCAAT
ACTGATAACAACCATAAGCTTGCAGAACGAGATGGCGTTCAAATGATCCC
AGCTATAttgttttataagaaaggtGAATATAATGGACCCAGAATCCATT
GCGAGATGGGCTTTGCAGAATGCCCAACAAGACAATGGCACGGTGAAAAT
ATGAAGCACTGGAAGGTATAATTCGTAGAGAACTATGTTGATGTAAGATT
TTAACAAGTACTCCTTATTTC Run BLAST on NCBI protein sequence of TCONS_00013736-protein >TCONS_00013736-protein ID=TCONS_00013736-protein|Name=TCONS_00013736-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MNPLHCLSFFWLMLVLCYGAPTNTNIKDESDETIKLLESKDLAVVKFYSD
SCVHCKTTSESFLEASKKIKESNPNITILEVNTDNNHKLAERDGVQMIPA
ILFYKKGEYNGPRIHCEMGFAECPTRQWHGENMKHWKV Run BLAST on NCBI transcript from alignment at sc0000171:481823..482664- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013736 ID=TCONS_00013736|Name=TCONS_00013736|organism=Clytia hemisphaerica|type=transcript|length=842bp|location=Sequence derived from alignment at sc0000171:481823..482664- (Clytia hemisphaerica)
CTTAAAATCTTGTCGATCAAAAGTTTAAGACCTGATTTTGAAGATACCAA
ACAAAATTAGTCTCTTTTTAAAGACGACCAATTTGAGCATCATTGAATTT
GATTGGCTCTTTACAACAAAAGAATTGGTTTTTATTGGTCAAAAAAAGAA
CAATATGAACCCACTCCATTGTTTAAGCTTCTTCTGGCTGATGTTGGTGC
TATGTTATGGCGCACCAACAAACATAGACTAGTAAACCACGTCGTTGTAT
TTCGCTGCAGATTAAACTTTCAATGGGATCTATTTTTTTTAAATGTTTTC
TGAATACAACTTTCAACTACAACAGTCTTTCCAATCAACTCTCCCGCGGC
AATTTCTATTTTTTATAAGAACTCTTTATTATAAGCACTATTCCCGCCTT
CCTGTGTCCAAGGAAAGACAGACGCTTGCTAGTCTACAACAAACACAAAC
ATCAAAGATGAAAGCGACGAAACTATAAAATTGCTGGAAAGTAAAGATTT
AGCGGTTGTGAAATTCTACAGTGATTCGTGTGTCCATTGCAAAACCACAA
GCGAATCCTTCTTAGAAGCTTCCAAAAAGATCAAAGAATCAAACCCGAAT
ATCACCATACTTGAAGTCAATACTGATAACAACCATAAGCTTGCAGAACG
AGATGGCGTTCAAATGATCCCAGCTATATTGTTTTATAAGAAAGGTGAAT
ATAATGGACCCAGAATCCATTGCGAGATGGGCTTTGCAGAATGCCCAACA
AGACAATGGCACGGTGAAAATATGAAGCACTGGAAGGTATAATTCGTAGA
GAACTATGTTGATGTAAGATTTTAACAAGTACTCCTTATTTC Coding sequence (CDS) from alignment at sc0000171:481823..482664- >TCONS_00013736 ID=TCONS_00013736|Name=TCONS_00013736|organism=Clytia hemisphaerica|type=CDS|length=834bp|location=Sequence derived from alignment at sc0000171:481823..482664- (Clytia hemisphaerica)
ACAAACATCAAAGATGAAAGCGACGAAACTATAAAATTGCTGGAAAGTAA
AGATTTAGCGGTTGTGAAATTCTACAGTGATTCGTGTGTCCATTGCAAAA
CCACAAGCGAATCCTTCTTAGAAGCTTCCAAAAAGATCAAAGAATCAAAC
CCGAATATCACCATACTTGAAGTCAATACTGATAACAACCATAAGCTTGC
AGAACGAGATGGCGTTCAAATGATCCCAGCTATATTGTTTTATAAGAAAG
GTGAATATAATGGACCCAGAATCCATTGCGAGATGGGCTTTGCAGAATGC
CCAACAAGACAATGGCACGGTGAAAATATGAAGCACTGGAAGGTATAAAT
GAACCCACTCCATTGTTTAAGCTTCTTCTGGCTGATGTTGGTGCTATGTT
ATGGCGCACCAACAAACACAAACATCAAAGATGAAAGCGACGAAACTATA
AAATTGCTGGAAAGTAAAGATTTAGCGGTTGTGAAATTCTACAGTGATTC
GTGTGTCCATTGCAAAACCACAAGCGAATCCTTCTTAGAAGCTTCCAAAA
AGATCAAAGAATCAAACCCGAATATCACCATACTTGAAGTCAATACTGAT
AACAACCATAAGCTTGCAGAACGAGATGGCGTTCAAATGATCCCAGCTAT
ATTGTTTTATAAGAAAGGTGAATATAATGGACCCAGAATCCATTGCGAGA
TGGGCTTTGCAGAATGCCCAACAAGACAATGGCACGGTGAAAATATGAAG
CACTGGAAGGTATAAATGAACCCACTCCATTGTTTAAGCTTCTTCTGGCT
GATGTTGGTGCTATGTTATGGCGCACCAACAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013736-exon-sc0000171-1575043694:482442..482664 | TCONS_00013736-exon-sc0000171-1575043694:482442..482664 | Clytia hemisphaerica | exon |
| TCONS_00013736-exon-sc0000171-1575043694:481823..482220 | TCONS_00013736-exon-sc0000171-1575043694:481823..482220 | Clytia hemisphaerica | exon |
| TCONS_00013736-exon-sc0000171-1510915933:482442..482664 | TCONS_00013736-exon-sc0000171-1510915933:482442..482664 | Clytia hemisphaerica | exon |
| TCONS_00013736-exon-sc0000171-1510915933:481823..482220 | TCONS_00013736-exon-sc0000171-1510915933:481823..482220 | Clytia hemisphaerica | exon |
| TCONS_00013736-exon-sc0000171-1491911889:482442..482664 | TCONS_00013736-exon-sc0000171-1491911889:482442..482664 | Clytia hemisphaerica | exon |
| TCONS_00013736-exon-sc0000171-1491911889:481823..482220 | TCONS_00013736-exon-sc0000171-1491911889:481823..482220 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000171 | supercontig | sc0000171:481823..482664 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013766 | Thioredoxin_domain |
| IPR012336 | Thioredoxin-like_fold |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0045454 | cell redox homeostasis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0045454 |
cell redox homeostasis |
Blast
The following BLAST results are available for this feature:
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