TCONS_00013725 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013725
Unique NameTCONS_00013725
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length815

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013725 ID=TCONS_00013725|Name=TCONS_00013725|organism=Clytia hemisphaerica|type=transcript|length=815bp
attttgtttaagttttcatcttttaattcttttttagagtttttttcgct
atttcaaaaaacaaattcaTCTTTTACATTCAAAATAAAAGTTGCAAGAC
AAATAATAATTTTGACAAAGATATATATATAATACACACAGAAACATAAA
TCAAAGTCAAAAGAGCTGCCAaaagatcttatcggagtttttgatttttc
taaaaaagcgatgtattgtgggattgtttcgagggtattacaatagaaat
ttcttaggaattttttgagggaattctattgaaatacccccgaaacaatc
ccaaaatGCATCGATGTTTtagaaaaactgttttaaaagATTACCTCGAT
TTAATAATTTCAGAAAACTTTCTCCAGCAGAAATCTACTACACCAGGAAA
TCTACTAATCGATCACTCTTCTGAAAGAGTTGATAGACAAAGACAGCTAA
AGCAAAAAGTCGAATCAACGATAAAACTACATTTACATTAcgttaaaaca
aaacaaaaataaaatcttattattaTCACAAACTAAAAtcgattgaaata
aaaaagcataattcttttaaaatatatattgttttttttaattgcgGAAA
ACCCACATGTGCAAGAAAGGGGCTCTCAAAACATTCGCGAAACAAAAGTC
TAGATATAGGAAAGTGCCCTCAAAAGTCGGTCGATTGTTACTAGCTTCCG
TATTTATTGCTATCTTTTCAAAAGATCGCTTAACATCCAAATCAATCTGG
CTGGTCAAATCTCGAAATTATGATGCGATTGTGCTAATCAAAGATCAgaa
aaatgatttgaattt
Run BLAST on NCBI

transcript from alignment at sc0000171:355637..356511-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013725 ID=TCONS_00013725|Name=TCONS_00013725|organism=Clytia hemisphaerica|type=transcript|length=875bp|location=Sequence derived from alignment at sc0000171:355637..356511- (Clytia hemisphaerica)
ATTTTGTTTAAGTTTTCATCTTTTAATTCTTTTTTAGAGTTTTTTTCGCT
ATTTCAAAAAACAAATTCATCTTTTACATTCAAAATAAAAGTTGCAAGAC
AAATAATAATTTTGACAAAGATATATATATAATACACACAGAAACATAAA
TCAAAGTCAAAAGAGCTGCCAAAAGATCTTATCGGAGTTTTTGATTTTTC
TAAAAAAGCGATGTATTGTGGGATTGTTTCGAGGGTATTACAATAGAAAT
TTCTTAGGAATTTTTTGAGGGAATTCTATTGAAATACCCCCGAAACAATC
CCAAAATGCATCGATGTTTTAGAAAAACTGTTTTAAAAGATTACCTCGAT
TTAATAATTTCAGAAAACTTTCTCCAGCAGAAATCTACTACACCAGGAAA
TCTACTAATCGATCACTCTTCTGAAAGAGTTGATAGACAAAGACATCTAA
AGCAAAAAGTCGAATCAACGATAAAACTACATTTACATTACGTTANACAA
AGACAGCTAAAGCAAAAAGTCGAATCAACGATAAAACTACATTTACATTA
CGTTAAAACAAAACAAAAATAAAATCTTATTATTATCACAAACTAAAATC
GATTGAAATAAAAAAGCATAATTCTTTTAAAATATATATTGTTTTTTTTA
ATTGCGGAAAACCCACATGTGCAAGAAAGGGGCTCTCAAAACATTCGCGA
AACAAAAGTCTAGATATAGGAAAGTGCCCTCAAAAGTCGGTCGATTGTTA
CTAGCTTCCGTATTTATTGCTATCTTTTCAAAAGATCGCTTAACATCCAA
ATCAATCTGGCTGGTCAAATCTCGAAATTATGATGCGATTGTGCTAATCA
AAGATCAGAAAAATGATTTGAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007660XLOC_007660Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013725-exon-sc0000171-1575043694:356068..356511TCONS_00013725-exon-sc0000171-1575043694:356068..356511Clytia hemisphaericaexon
TCONS_00013725-exon-sc0000171-1575043694:355637..356007TCONS_00013725-exon-sc0000171-1575043694:355637..356007Clytia hemisphaericaexon
TCONS_00013725-exon-sc0000171-1510915933:356068..356511TCONS_00013725-exon-sc0000171-1510915933:356068..356511Clytia hemisphaericaexon
TCONS_00013725-exon-sc0000171-1510915933:355637..356007TCONS_00013725-exon-sc0000171-1510915933:355637..356007Clytia hemisphaericaexon
TCONS_00013725-exon-sc0000171-1491911889:356068..356511TCONS_00013725-exon-sc0000171-1491911889:356068..356511Clytia hemisphaericaexon
TCONS_00013725-exon-sc0000171-1491911889:355637..356007TCONS_00013725-exon-sc0000171-1491911889:355637..356007Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000171supercontigsc0000171:355637..356511 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.22816	1.38977	2.38103	3.62634	0.775954	1.3119	0.514767	0.562263	0.516137	0.327989	0.474699	0.974509	0.382887	0.790949	0.310705	0.407235	0.0973144	0.429394	0.406881	0.285898	0.0785994	0.287036	0	0.312083	0.452435	0.702687
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013725 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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