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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013707 ID=TCONS_00013707|Name=TCONS_00013707|organism=Clytia hemisphaerica|type=transcript|length=3481bpRun BLAST on NCBI transcript from alignment at sc0000171:129591..154292- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013707 ID=TCONS_00013707|Name=TCONS_00013707|organism=Clytia hemisphaerica|type=transcript|length=24702bp|location=Sequence derived from alignment at sc0000171:129591..154292- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00013707 vs. Swiss-Prot (Human)
Match: NOTC2 (Neurogenic locus notch homolog protein 2 OS=Homo sapiens GN=NOTCH2 PE=1 SV=3) HSP 1 Score: 305.064 bits (780), Expect = 1.180e-84 Identity = 243/730 (33.29%), Postives = 340/730 (46.58%), Query Frame = 2
Query: 1388 SKPCRNGGMCKVVGNTDFLCVCPQTFKGKRCDVRNHCHPNPCAHGSKCTETVGVGFQCSCAVGYKGRTC-NERNMC-LPNPCENEGVCTESTTTPEGFSCQCHDSWTGHVCTQKKSSCEPNPCQNNARCLPDGLTGGYECVCNKGYKGKLCSENDKGDNSIEAIANLLHIGHVSEIDENAVSRTSIPGAVKTTISHGVCPVNPCLHGGICEMDALQPSGKRCTCMSGFTGTLCQE--KSCL-----CENGGSCVGEGFEAKCLCKPGFGGSKCQEHT-QCNEDTCMHGGLCIEEVGGFKCKCDVGYKGKRCQDTDICKPNPCLHAGSCQD--MGDTYKCECKSGFKGRHC-EDMDLC---QPNPCKNSGQCFGFNGGYQCDCPKGYRGKNCDQKVH-CLTNPCSNGAECIEILPTPEHPDGGYKCGCKSGFMGTTCE-DINHCYGSPCHNGGKCVSGVHDFKCDCALGYRGALCQ-ETDYCQPNPCANNGYCTSNEQSNGFVCHCSEGWRGLTCTE-PDRCSPNPCAHGACQEIAGGYFCNCTTGFKGTKCS-EIDHCAPNPCLHDGRCSEINGGLGFVCQCQLGYKGQNCE-HKDLCHPNPCEHDGLCHEIMTSSSDILSSRDFIRNARDRYTKRSSELDTH--AQNKTKR------DVGGEVECICTKGYKGRKC-ADMDPCYPNPCLHNSVCISDDKSTSTTCKCSLGWKGEHCQL-MDMCSPNPCR 3481
S+PC NGG C ++ + C C F GK C + C +PCA+GS CT TV F C C G+ G+ C + N C +P C++ G C P + CQC +TG C C P+PC N C G +EC C G++G C N ID+ CP + C +GG+C +D + + C C +TG C E CL C+NGG+C C+C G+ G C E+ C +C G CI+ V F C C G G C D C NPC C + Y C C G+KG C ED+D C NPC+++G+C +G + C+C KGY G C+ ++ C ++PC N A C++ + GG+ C C GF G CE +IN C +PC N G+CV V+ F+C C G+ G +CQ + D C PC N C + NG+ C C+ G+ G+ C E D C P+PC HG CQ+ Y C C G+ G CS +ID C +PCL+DGRC ++ G+ C CQ G G NCE + D C NPC H G+C + + S + S +T + +D A N ++ V G CIC +G C + ++ C NPC+H + + C C GW G +C++ + C NPC+
Sbjct: 112 SRPCLNGGTCHMLSRDTYECTCQVGFTGKECQWTDACLSHPCANGSTCT-TVANQFSCKCLTGFTGQKCETDVNECDIPGHCQHGGTC---LNLPGSYQCQCPQGFTGQYCDSLYVPCAPSPCVNGGTCRQTG-DFTFECNCLPGFEGSTCERN---------------------IDD--------------------CPNHRCQNGGVC-VDGV--NTYNCRCPPQWTGQFCTEDVDECLLQPNACQNGGTCANRNGGYGCVCVNGWSGDDCSENIDDCAFASCTPGSTCIDRVASFSCMCPEGKAGLLCHLDDACISNPCHKGALCDTNPLNGQYICTCPQGYKGADCTEDVDECAMANSNPCEHAGKCVNTDGAFHCECLKGYAGPRCEMDINECHSDPCQNDATCLDKI-------GGFTCLCMPGFKGVHCELEINECQSNPCVNNGQCVDKVNRFQCLCPPGFTGPVCQIDIDDCSSTPCLNGAKCI--DHPNGYECQCATGFTGVLCEENIDNCDPDPCHHGQCQDGIDSYTCICNPGYMGAICSDQIDECYSSPCLNDGRCIDLVN--GYQCNCQPGTSGVNCEINFDDCASNPCIH-GICMDGINRYSCVCSP---------GFTGQRCNIDIDECASNPCRKGATCINGVNG-FRCICPEGPHHPSCYSQVNECLSNPCIHGNC---TGGLSGYKCLCDAGWVGINCEVDKNECLSNPCQ 767 HSP 2 Score: 266.159 bits (679), Expect = 1.645e-72 Identity = 232/744 (31.18%), Postives = 337/744 (45.30%), Query Frame = 2
Query: 1364 LDEFDPCESKPCRNGGMCKVVGNTD--FLCVCPQTFKGKRCDVR-NHCHPNPCAHGSKCTETVGVGFQCSCAVGYKGRTCN-ERNMCLPNPCENEGVCTESTTTPEGFSCQCHDSWTGHVCTQKKSSCEPNPCQNNARCLPDGLTGGYECVCNKGYKGKLCSEN--------------DKGDNSIEAIANLLHIGHV--SEIDENAVSRTSIPGAVKTTISHGVCPVNPCLHGGICEMDALQPSGKRCTCMSGFTGTLCQEKSCLCENG----GSCVGEGFEAKCLCKPGFGGSKCQ-EHTQCNEDTCMHGGLCIEEVGGFKCKCDVGYKGKRC-QDTDICKPNPCLHAGSCQDMGDTYKCECKSGFKGRHCE-DMDLCQPNPCKNSGQCFGFNGGYQCDCPKGYRGKNCDQKV-HCLTNPCSNGAECIEILPTPEHPDGGYKCGCKSGFMGTTCEDI-NHCYGSPCHNGGKCVSG--VHDFKCDCALGYRGALCQ-ETDYCQPNPCANNGYCTSNEQSNGFVCHCSEGWRGLTCTEP-DRCSPNPCAH-GACQEIAGGYFCNCTTGFKGTKC-SEIDHCAPNPCLHDGRCSEINGGLGFVCQCQLGYKGQNCEHK-DLCHPNPCEHDGLCHEIMTSSSDILSSRDFIRNARDRYTKRSSELDTHAQNKTKRDVGGEVECICTKGYKGRKCA-DMDPCYPNPCLHNSVCISDDKSTSTTCKCSLGWKGEHCQ-LMDMCSPNPCR 3481
+DE S PC + G C NTD F C C + + G RC++ N CH +PC + + C + +G GF C C G+KG C E N C NPC N G C + F C C +TG VC C PC N A+C+ GYEC C G+ G LC EN G +S I N ++G + +IDE C +PCL+ G C +D + +G +C C G +G C+ C + G C+ C+C PGF G +C + +C + C G CI V GF+C C G C + C NPC+H G+C YKC C +G+ G +CE D + C NPC+N G C GY+C C KG++G NC + C +NPC N C + + GY C C + G C+ + C +PC N C + C CA G++G C + D C PC N+G C + + S ++C C G+ G+ C E D C NPC + G+C + + C C GF G KC ++++ C PC + G CS+ + C+CQ G+ G +CE+ + C + C + G C + + S S C+C G+ G C +++ C +PCL+ C+ D + C C LG+ G++CQ L+++CS +PC+
Sbjct: 416 VDECAMANSNPCEHAGKCV---NTDGAFHCECLKGYAGPRCEMDINECHSDPCQNDATCLDKIG-GFTCLCMPGFKGVHCELEINECQSNPCVNNGQCVDKVNR---FQCLCPPGFTGPVCQIDIDDCSSTPCLNGAKCIDH--PNGYECQCATGFTGVLCEENIDNCDPDPCHHGQCQDGIDSYTCICNPGYMGAICSDQIDE--------------------CYSSPCLNDGRC-IDLV--NGYQCNCQPGTSGVNCEINFDDCASNPCIHGICMDGINRYSCVCSPGFTGQRCNIDIDECASNPCRKGATCINGVNGFRCICPEGPHHPSCYSQVNECLSNPCIH-GNCTGGLSGYKCLCDAGWVGINCEVDKNECLSNPCQNGGTCDNLVNGYRCTCKKGFKGYNCQVNIDECASNPCLNQGTCFDDI-------SGYTCHCVLPYTGKNCQTVLAPCSPNPCENAAVCKESPNFESYTCLCAPGWQGQRCTIDIDECISKPCMNHGLCHNTQGS--YMCECPPGFSGMDCEEDIDDCLANPCQNGGSCMDGVNTFSCLCLPGFTGDKCQTDMNECLSEPCKNGGTCSDYVN--SYTCKCQAGFDGVHCENNINECTESSCFNGGTCVDGINSFS----------------------------------------CLCPVGFTGSFCLHEINECSSHPCLNEGTCV--DGLGTYRCSCPLGYTGKNCQTLVNLCSRSPCK 1073 HSP 3 Score: 247.669 bits (631), Expect = 1.238e-66 Identity = 205/643 (31.88%), Postives = 288/643 (44.79%), Query Frame = 2
Query: 1622 PCENEGVCTESTTTPEGFSCQCHDSWTGHVCTQKKSSCEPNPCQNNARCLPDGLTGGYECVCNKGYKGKLCSENDKGDNSIEAIANLLHIGHVSEIDENAVSRTSIPGAVKTTISHGVCPVNPCLHGGICEMDALQPSGKRCTCMSGFTGTLCQ-EKSCL---CENGGSCVGEGFEAKCLCKPGFGGSKCQEHTQCNE----DTCMHGGLCIEEVGGFKCKCDVGYKGKRCQDTDI-CKPNPCLHAGSCQDMGD-TYKCECKSGFKGRHCE-DMDLCQPNPCKNSGQCFGFNGGYQCDCPKGYRGKNCDQKV-HCLTNP--CSNGAECIEILPTPEHPDGGYKCGCKSGFMGTTC-EDINHCYGSPCHNGGKCVSGVHDFKCDCALGYRGALCQETDYCQPNPCANNGYCTSNEQSNGFVCHCSEGWRGLTCTE-PDRCS---PNPCAH-GACQEIAGGYFCNCTTGFKGTKCS-EIDHCAPNPCLHDGRCSEINGGLGFVCQCQLGYKGQNCEHK-DLCHPNPCEHDGLCHEIMTSSSDILSSRDFIRNARDRYTKRSSELDTHAQNKTKRDVGGEVECICTKGYKGRKC-ADMDPCYPNPCLHNSVCISDDKSTSTTCKCSLGWKGEHCQL-MDMCSPNPC 3478
PC NEG+C + G+ C+C + + G C Q + CE N CQN C+ + G C C G+ G+ C + + SH PCL+GG C M L CTC GFTG CQ +CL C NG +C + C C GF G KC+ T NE C HGG C+ G ++C+C G+ G+ C + C P+PC++ G+C+ GD T++C C GF+G CE ++D C + C+N G C Y C CP + G+ C + V CL P C NG C + +GGY C C +G+ G C E+I+ C + C G C+ V F C C G G LC D C NPC C +N + ++C C +G++G CTE D C+ NPC H G C G + C C G+ G +C +I+ C +PC +D C + G GF C C G+KG +CE + + C NPC ++G C +K R +C+C G+ G C D+D C PCL+ + CI D C+C+ G+ G C+ +D C P+PC
Sbjct: 34 PCVNEGMCV-TYHNGTGY-CKCPEGFLGEYC-QHRDPCEKNRCQNGGTCVAQAMLGKATCRCASGFTGEDC---------------------------------------QYSTSHPCFVSRPCLNGGTCHM--LSRDTYECTCQVGFTGKECQWTDACLSHPCANGSTCTTVANQFSCKCLTGFTGQKCE--TDVNECDIPGHCQHGGTCLNLPGSYQCQCPQGFTGQYCDSLYVPCAPSPCVNGGTCRQTGDFTFECNCLPGFEGSTCERNIDDCPNHRCQNGGVCVDGVNTYNCRCPPQWTGQFCTEDVDECLLQPNACQNGGTC-------ANRNGGYGCVCVNGWSGDDCSENIDDCAFASCTPGSTCIDRVASFSCMCPEGKAGLLCHLDDACISNPCHKGALCDTNPLNGQYICTCPQGYKGADCTEDVDECAMANSNPCEHAGKCVNTDGAFHCECLKGYAGPRCEMDINECHSDPCQNDATCLDKIG--GFTCLCMPGFKGVHCELEINECQSNPCVNNGQC-----------------------------------VDKVNR-----FQCLCPPGFTGPVCQIDIDDCSSTPCLNGAKCI--DHPNGYECQCATGFTGVLCEENIDNCDPDPC 579 HSP 4 Score: 246.514 bits (628), Expect = 2.640e-66 Identity = 203/655 (30.99%), Postives = 284/655 (43.36%), Query Frame = 2
Query: 1382 CESKPCRNGGMCKVVGNTDFLCVCPQTFKGKRCDVR-NHCHPNPCAHGSKCTETVGVGFQCSCAVGYKGRTCNERNM-CLPNPCENEGVCTESTTTPEGFSCQCHDSWTGHVCTQKKSSCEPNPCQNNARCLPDGLTGGYECVCNKGYKGKLCSENDKGDNSIEAIANLLHIGHVSEIDENAVSRTSIPGAV--KTTISHGVCPVNPCLHGGICEMDALQPSGKRCTCMSGFTGTLCQ-------EKSCLCENGGSCVGEGFEAKCLCKPGFGGSKC-QEHTQCNEDTCMHGGLCIEEVGGFKCKCDVGYKGKRCQD-TDICKPNPC------------------------------------------------LHAGSCQDMGDTYKCECKSGFKGRHCED-MDLCQPNPCKNSGQCFGFNGGYQCDCPKGYRGKNCDQKV-HCLTNPCSNGAECIEILPTPEHPDGGYKCGCKSGFMGTTCED-INHCYGSP-CHNGGKCVSGVHDFKCDCALGYRGALCQ-ETDYCQPNPCANNGYCTSNEQSNGFVCHCSEGWRGLTC-TEPDRCSPNPCAHGACQEIAG----GYFCNCTTGFKGTKCSEIDHCAPNPCLHDGRCSEINGGLGFVC----QCQLGYKGQNCEHKDLCHP 3121
C S PC+NGG C + N + C C + FKG C V + C NPC + C + + G+ C C + Y G+ C C PNPCEN VC ES E ++C C W G CT C PC N+ C G Y C C G+ G C E+ + +AN G N S +PG K C PC +GG C + C C +GF G C+ E SC NGG+CV CLC GF GS C E +C+ C++ G C++ +G ++C C +GY GK CQ ++C +PC H+G C + G+T+ C+C G+ G +CE+ +D C NPC++ C F GGY+C+C GY+G NC+ +V C PC NG CI+++ +KC C G G CE+ I+ C P C NGG+C+ + + C C G+ G C+ + + C NPC++ G + +N ++C C + G C T D C PC +G +A G+ C C GF G +C C C +C G C C+ G C+H CHP
Sbjct: 761 CLSNPCQNGGTCDNLVN-GYRCTCKKGFKGYNCQVNIDECASNPCLNQGTCFDDIS-GYTCHCVLPYTGKNCQTVLAPCSPNPCENAAVCKESPNF-ESYTCLCAPGWQGQRCTIDIDECISKPCMNHGLC--HNTQGSYMCECPPGFSGMDCEEDID-----DCLANPCQNGGSCMDGVNTFSCLCLPGFTGDKCQTDMNECLSEPCKNGGTCSDYV---NSYTCKCQAGFDGVHCENNINECTESSCF--NGGTCVDGINSFSCLCPVGFTGSFCLHEINECSSHPCLNEGTCVDGLGTYRCSCPLGYTGKNCQTLVNLCSRSPCKNKGTCVQKKAESQCLCPSGWAGAYCDVPNVSCDIAASRRGVLVEHLCQHSGVCINAGNTHYCQCPLGYTGSYCEEQLDECASNPCQHGATCSDFIGGYRCECVPGYQGVNCEYEVDECQNQPCQNGGTCIDLV-------NHFKCSCPPGTRGLLCEENIDDCARGPHCLNGGQCMDRIGGYSCRCLPGFAGERCEGDINECLSNPCSSEGSLDCIQLTNDYLCVCRSAFTGRHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQS--SCGQVKCRKGEQCVHTASGPRCFCPSPRDCESGCASSPCQHGGSCHP 1391 HSP 5 Score: 89.3521 bits (220), Expect = 1.011e-17 Identity = 87/317 (27.44%), Postives = 123/317 (38.80%), Query Frame = 2
Query: 1367 DEFDPCESKPCRNGGMCK-VVGNTDFLCVCPQTFKGKRCDVR-NHCHPNPCAHGSKCTETVGVGFQCSCAVGYKGRTCNER-NMCLPNP-CENEGVCTESTTTPEGFSCQCHDSWTGHVCTQKKSSCEPNPCQNNARCLPDGLTGGYECVCNKGYKGKLCSENDKGDNSIEAIANLLHIGHVSEIDENAVSRTSIPGAVKTTISHGVCPVNPCLHGGICEMDALQPSGKRCTCMSGFTGTLCQEK--SCLCENGGSCVGEGFEAKCLCKPGFGGSKCQEHTQCNEDTCMHGGLC--IEEVGGFKCKCDVGYKGKRCQ 2293
++ D C S PC++G C +G + C C ++G C+ + C PC +G C + V F+CSC G +G C E + C P C N G C + G+SC+C + G C + C NPC + LT Y CVC + G+ C + +D VCP PCL+GG C + + P G C C GF+G CQ C G CV +C C S + C C HGG C + + C+C + G RC+
Sbjct: 1148 EQLDECASNPCQHGATCSDFIGG--YRCECVPGYQGVNCEYEVDECQNQPCQNGGTCIDLVN-HFKCSCPPGTRGLLCEENIDDCARGPHCLNGGQCMDRIG---GYSCRCLPGFAGERCEGDINECLSNPCSSEGSLDCIQLTNDYLCVCRSAFTGRHCE---------------------TFVD--------------------VCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKCRKGEQCVHTASGPRCFCP-----SPRDCESGCASSPCQHGGSCHPQRQPPYYSCQCAPPFSGSRCE 1412 The following BLAST results are available for this feature:
BLAST of TCONS_00013707 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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