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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013668 ID=TCONS_00013668|Name=TCONS_00013668|organism=Clytia hemisphaerica|type=transcript|length=650bp
CTTTGTTTGTGTATACTTTGCTACAAGCTTGAAGCTGTCTAATAAAATTT
AATGGCAAATCTTTCCTTTGGAAATTTTAATAACTCGATTATATGAAAGG
GCTTTCTAGGTAGATACACAGCTTGTATGGTCAAATGTTGGATACAAGAG
TATTGTaataaaaatgagaatattTATTTCTGGGTTGTTGTTGTTTATAC
TTGTTGTAGTTACTCAAGCAAGATTCGTGTCGTGGAGAGACATCAACACA
CCGAAACGAGACCATGTTTCACGACACGCAGAAAAGTCAGCGGCAGTATA
CCCAGCACCGAAATTGAATTTAAGGGTTGAACCACCATCAACCAAAGACA
AAGTGGCCGGGATATCGAATATCTTAAAAGGAACAGTTAATGGAATTTCA
CGTGACACTGTTTTCGAAGTTGACGAAACTCCATCGAGCCCGGACCAACA
GGGAAGCGATGTTGAAGACCCTGAAAAAGAAATCCTCCCGATAGAAGCCA
ACTCTTATGAACCAAACATCAGTCAGAAAGATTCCGAATCGGAATACCGG
CCGACGACACCAAGTGCTGTTCTCCAACTAGAGGAACCATTATCGGGGAA
ATCGGGTTCTCAAAACACACCACAACCAGACAGTCCAACATCAAGTGGCA Run BLAST on NCBI protein sequence of TCONS_00013668-protein >TCONS_00013668-protein ID=TCONS_00013668-protein|Name=TCONS_00013668-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
MRIFISGLLLFILVVVTQARFVSWRDINTPKRDHVSRHAEKSAAVYPAPK
LNLRVEPPSTKDKVAGISNILKGTVNGISRDTVFEVDETPSSPDQQGSDV
EDPEKEILPIEANSYEPNISQKDSESEYRPTTPSAVLQLEEPLSGKSGSQ
NTPQPDSPTSSG Run BLAST on NCBI transcript from alignment at sc0000171:189158..190075+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013668 ID=TCONS_00013668|Name=TCONS_00013668|organism=Clytia hemisphaerica|type=transcript|length=918bp|location=Sequence derived from alignment at sc0000171:189158..190075+ (Clytia hemisphaerica)
CTTTGTTTGTGTATACTTTGCTACAAGCTTGAAGCTGTCTAATAAAATTT
AATGGCAAATCTTTCCTTTGGAAATTTTAATAACTCGATTATATGAAAGG
GCTTTCTAGGTAGATACACAGCTTGTATGGTCAAATGTTGGATACAAGAG
TATTGTaataaaaatgagaatattTATTTCTGGGTTGTTGTTGTTTATAC
TTGTTGTAGTTACTCAAGCAAGATTCGTGTCGTGGAGAGGTAAAATATAT
GAGACACGTTTTTTTTGTTGGAAGAAAAAGTTCTATAAGAATATGAGAGC
ACGAGGCTCCGagcgatggccaaaatattaagaacacgttaagaacattt
taagtcttCGCAGAGTCTTAAACAAAAGCACTGTTAAGAACATGTTTGGG
TTtaaaaaagaataagaaataTAACTTTGCCACAGGAAATATTGATCATA
CTTTAAAATAAGAATCAAACAAATTCTAAAATGTCTATGTGTGTTCACTA
TTTTCAGACATCAACACACCGAAACGAGACCATGTTTCACGACACGCAGA
AAAGTCAGCGGCAGTATACCCAGCACCGAAATTGAATTTAAGGGTTGAAC
CACCATCAACCAAAGACAAAGTGGCCGGGATATCGAATATCTTAAAAGGA
ACAGTTAATGGAATTTCACGTGACACTGTTTTCGAAGTTGACGAAACTCC
ATCGAGCCCGGACCAACAGGGAAGCGATGTTGAAGACCCTGAAAAAGAAA
TCCTCCCGATAGAAGCCAACTCTTATGAACCAAACATCAGTCAGAAAGAT
TCCGAATCGGAATACCGGCCGACGACACCAAGTGCTGTTCTCCAACTAGA
GGAACCATTATCGGGGAAATCGGGTTCTCAAAACACACCACAACCAGACA
GTCCAACATCAAGTGGCA Coding sequence (CDS) from alignment at sc0000171:189158..190075+ >TCONS_00013668 ID=TCONS_00013668|Name=TCONS_00013668|organism=Clytia hemisphaerica|type=CDS|length=972bp|location=Sequence derived from alignment at sc0000171:189158..190075+ (Clytia hemisphaerica)
atgagaatattTATTTCTGGGTTGTTGTTGTTTATACTTGTTGTAGTTAC
TCAAGCAAGATTCGTGTCGTGGAGAGACATCAACACACCGAAACGAGACC
ATGTTTCACGACACGCAGAAAAGTCAGCGGCAGTATACCCAGCACCGAAA
TTGAATTTAAGGGTTGAACCACCATCAACCAAAGACAAAGTGGCCGGGAT
ATCGAATATCTTAAAAGGAACAGTTAATGGAATTTCACGTGACACTGTTT
TCGAAGTTGACGAAACTCCATCGAGCCCGGACCAACAGGGAAGCGATGTT
GAAGACCCTGAAAAAGAAATCCTCCCGATAGAAGCCAACTCTTATGAACC
AAACATCAGTCAGAAAGATTCCGAATCGGAATACCGGCCGACGACACCAA
GTGCTGTTCTCCAACTAGAGGAACCATTATCGGGGAAATCGGGTTCTCAA
AACACACCACAACCAGACAGTCCAACATCAAGTGGCatgagaatattTAT
TTCTGGGTTGTTGTTGTTTATACTTGTTGTAGTTACTCAAGCAAGATTCG
TGTCGTGGAGAGACATCAACACACCGAAACGAGACCATGTTTCACGACAC
GCAGAAAAGTCAGCGGCAGTATACCCAGCACCGAAATTGAATTTAAGGGT
TGAACCACCATCAACCAAAGACAAAGTGGCCGGGATATCGAATATCTTAA
AAGGAACAGTTAATGGAATTTCACGTGACACTGTTTTCGAAGTTGACGAA
ACTCCATCGAGCCCGGACCAACAGGGAAGCGATGTTGAAGACCCTGAAAA
AGAAATCCTCCCGATAGAAGCCAACTCTTATGAACCAAACATCAGTCAGA
AAGATTCCGAATCGGAATACCGGCCGACGACACCAAGTGCTGTTCTCCAA
CTAGAGGAACCATTATCGGGGAAATCGGGTTCTCAAAACACACCACAACC
AGACAGTCCAACATCAAGTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013668-exon-sc0000171-1491911889:189158..189396 | TCONS_00013668-exon-sc0000171-1491911889:189158..189396 | Clytia hemisphaerica | exon |
| TCONS_00013668-exon-sc0000171-1510915933:189158..189396 | TCONS_00013668-exon-sc0000171-1510915933:189158..189396 | Clytia hemisphaerica | exon |
| TCONS_00013668-exon-sc0000171-1575043694:189158..189396 | TCONS_00013668-exon-sc0000171-1575043694:189158..189396 | Clytia hemisphaerica | exon |
| TCONS_00013668-exon-sc0000171-1491911889:189665..190075 | TCONS_00013668-exon-sc0000171-1491911889:189665..190075 | Clytia hemisphaerica | exon |
| TCONS_00013668-exon-sc0000171-1510915933:189665..190075 | TCONS_00013668-exon-sc0000171-1510915933:189665..190075 | Clytia hemisphaerica | exon |
| TCONS_00013668-exon-sc0000171-1575043694:189665..190075 | TCONS_00013668-exon-sc0000171-1575043694:189665..190075 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000171 | supercontig | sc0000171:189158..190075 + |
Blast
The following BLAST results are available for this feature:
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