TCONS_00013658 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013658
Unique NameTCONS_00013658
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length541

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013658 ID=TCONS_00013658|Name=TCONS_00013658|organism=Clytia hemisphaerica|type=transcript|length=541bp
CCCAACCCAAATAATTGAAAACATGGAAAGATTCATCAAAAATTGGAACA
CCGTTAGCTATAAAGGATGGAAGATCTTGCAGGAAAGCTTTTTTATGAAG
TGGGAAAATTTAAAAGTACATGTGTTGCTGGGCTGTTTATCAGGAATTCC
TGTTgGTCATGGAACAAACAAAAACGAGAACTTACACAGACAAATGAGAA
TAATCTTGCCAAGGAATAGACTCGGTATTGATACTGCAAATGCATTGTTC
AACTCTATTTTCTACTACCATAACGAGAAGAAAAAAACCGTCGACAGAAA
TGGAAAAGCCGTCAAAATAAAACACGTTCAGCCAATTTGGAAATTCGCCG
GTAAAGATCATCAGACGATAGGAATATGCCTTTAAATAACAATGTGGACT
TTGACAAACCCTTCGAAATTGAATCCTTAATGGATGATAATCTAGCCATA
TCTGAACATGCAGACCACGATGCCTACAATCTAACTCAAGCCTTACCTGC
AAGAACTAGACGCATCATCAACATTGCAAATCAATTCAAAC
Run BLAST on NCBI

transcript from alignment at sc0000171:28732..30148+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013658 ID=TCONS_00013658|Name=TCONS_00013658|organism=Clytia hemisphaerica|type=transcript|length=1417bp|location=Sequence derived from alignment at sc0000171:28732..30148+ (Clytia hemisphaerica)
CCCAACCCAAATAATTGAAAACATGGAAAGATTCATCAAAAATTGGAACA
CCGTTAGCTATAAAGGATGGAAGATCTTGCAGGAAAGCTTTTTTATGAAG
TGGGAAAATTTAAAAGTACATGTGTTGCTGGGCTGTTTATCAGGAATTCC
TGTTggtaagtttttcttttttaatacaTGCTTTTAAGTGTTAGGTGTCT
ATGAGAAATCCTTGCAAAGTAGTAAACCAATTTCCTAAACAAGAAATAAC
AGAAGGaataaaatctttttacaaGATGGAAGGCTTAAAGAAGATTTCCC
TCCTAAACATAGGAAGTTTACCAAATTACCTActggacagagcaaattta
ccccccagacaaggcaaattttgatgatttttcgctacccccggacaata
tatcctccaccccccccccacNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccccccccccatgtacagac
attttctggaatagcccattcttTGCACTCTTTTGacatcaaaaatcaaa
agtcctgttttaacatttttctcgagttaggttgAGGATTGACTATATTC
GCTTAAATGTCTTCCATATCGAATTTTGAAAGCTATCGAACGGTGTAAGT
TGTCTTTTTTCTCATAAGAAGTTGAGAGCTGGGTTTACTGCAATCTTTAT
GTAAACTCAGCGTCTTTGaagcagcgattcagacctAAAAAAACAATGTC
AATCTGGCTTTTTTAATacaacaatatttcaaatatattttatatttcag
GTCATGGAACAAACAAAAACGAGAACTTACACAGACAAATGAGAATAATC
TTGCCAAGGAATAGACTCGGTATTGATACTGCAAATGCATTGTTCAACTC
TATTTTCTACTACCATAACGAGAAGAAAAAAACCGTCGACAGAAATGGAA
AAGCCGTCAAAATAAAACACGTTCAGCCAATTTGGAAATTCGCCGGTAAA
GATCATCAGACGATAGGAATATGCCTTTAAATAACAATGTGGACTTTGAC
AAACCCTTCGAAATTGAATCCTTAATGGATGATAATCTAGCCATATCTGA
ACATGCAGACCACGATGCCTACAATCTAACTCAAGCCTTACGTAAGTGTG
AAACACGATACTATACCCTTTTCCTTTCTACATTATAAATTTGGACCTCC
GAACCCCCTTGTTGCAGAGATTTCTGTCTTACGCCCATGGCTTGGTAAAG
GAGCTTACGATGAGATGAGGATTAGTTTTTTCTCGGATTCATAACAAATG
TTTGTGCTTAACTTTATTCTAGCTGCAAGAACTAGACGCATCATCAACAT
TGCAAATCAATTCAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007633XLOC_007633Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013658-exon-sc0000171-1491911889:28732..28886TCONS_00013658-exon-sc0000171-1491911889:28732..28886Clytia hemisphaericaexon
TCONS_00013658-exon-sc0000171-1510915933:28732..28886TCONS_00013658-exon-sc0000171-1510915933:28732..28886Clytia hemisphaericaexon
TCONS_00013658-exon-sc0000171-1575043694:28732..28886TCONS_00013658-exon-sc0000171-1575043694:28732..28886Clytia hemisphaericaexon
TCONS_00013658-exon-sc0000171-1491911889:29582..29922TCONS_00013658-exon-sc0000171-1491911889:29582..29922Clytia hemisphaericaexon
TCONS_00013658-exon-sc0000171-1510915933:29582..29922TCONS_00013658-exon-sc0000171-1510915933:29582..29922Clytia hemisphaericaexon
TCONS_00013658-exon-sc0000171-1575043694:29582..29922TCONS_00013658-exon-sc0000171-1575043694:29582..29922Clytia hemisphaericaexon
TCONS_00013658-exon-sc0000171-1491911889:30104..30148TCONS_00013658-exon-sc0000171-1491911889:30104..30148Clytia hemisphaericaexon
TCONS_00013658-exon-sc0000171-1510915933:30104..30148TCONS_00013658-exon-sc0000171-1510915933:30104..30148Clytia hemisphaericaexon
TCONS_00013658-exon-sc0000171-1575043694:30104..30148TCONS_00013658-exon-sc0000171-1575043694:30104..30148Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000171supercontigsc0000171:28732..30148 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.288215	0.341627	1.09909	0.643097	0.270148	0.557704	0.108264	0.142337	0.213209	0.442839	0	0.130236	0	0	0	0	0	0	0	0	0.344195	0.102395	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013658 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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