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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013628 ID=TCONS_00013628|Name=TCONS_00013628|organism=Clytia hemisphaerica|type=transcript|length=2236bp
ATCTGTAAACTATAACACAATTCCCTATAAACAAAATAGTTCCTGCTGGT
AAAATAAAATAACCTGGATATTTAAAGCATAAGAAACTCGTGGATAAAGC
AAACAGCCGAGCCAGAGAACCGGCAGACGATCTAATACTGTCAATAAGAC
AAGAGTTCTCTGATGTCACAGTATTAAACAATAAAATCTTCCCTGCTGAC
TGGGCATTGAAAAAAACCCATCCTTTAGCAAGGGTTAGGAACGCCAAATA
AAGTAATTGGGGTATGTAACTCTTAAGATTGTCAATCCTTGGTAATGGGA
TGATAGCAAGTATAACCAAGGTTAGATTTAACGCTGATAGGTAGAAGAAA
TAATTACTTTTGAGTCCTTTGAAGACACCAAATTTTATCAGCATTGTTAT
CACAAGAAAATGAATGCCAGCTCCAGCTATGGTGAGCCATGAAATCCAAC
TGACTGGCCAATGGAATAATGTGGCTGCGTTCATTACGATTAAGGAGGGT
GCTGCATTAGTACAATATCTTATAATGATATAACACGTACATAACGAAAT
TATATCGATTTGCAAAATCTCTTTCCATTCCATAAGTTTTCGTGATCCTT
TTGGCACGGAAGCATGCTTgttacttttgcaaatttcaCCAGTAGTTAAA
CGGTCCATTCCGCTGTTTATTTTTCCAGATCTTTTCTCCAATGCTTGTTC
ATCATGGGAAGATTTTGACATAGCGTTGAATTTCTCTCTCATACGATCCA
GGTCTTTTGATAGATCAGTGAGTTGGAACCATAATATGATGAACAATAGG
GCTAACAGGACTACAAGGAATACGTGTAATGCATTGTATTTATTGATCAT
CCATCCACCTGCAAAAATTTAACCTCAAAAATTTAAACCTCTAAAATGGG
ATATAAGTTATTATCATTCTATTGACCCGAATATGAATGAGCTTGAAGAC
AACGGGGATGACAAAAGTCTTTGTCAAGAAAGCATAATTGTAGTTCGAAA
ATAAGAATCTAATTTAGAtaaggaaaattttatttttgggaTTAGAGTAC
TGTATAATTTTTGAATAGTCTTGTAGCTGTAAACCCATGTCATCCTAACG
TTGATCGCCGACAGTCTTCGTAACGATGATCCGACTAAAGCTACAATTAC
AATTAAGTACAGAAATAATGGTTCTGTTTATTGACTATCCACATTACTAT
TAAAACTTACCAATTATGAGGTGGACCCACGAGAAAAAGACTGGTGCACC
AGGTCCAATAGCCATTCCAATGGCGAAGAAAAGTTCATACCAACTCAAAA
CTTGGATCAACTCGTTTTCTTTAtgataacattttttgaattcgCCTGAT
GAAAATATAAAGGACGGAATAAATATATGTCCGAATTCATTGTACCGTTA
GTTTGTGTATAATGccgacataccttgtctaatttCCTCTAAGCGactat
ctggtctgcaaagtagTTAGAATGATTTTTAAACAGATTACTCAACGTTT
TATtcataaacatttaaaaagacCAGATAGCTGCTATAATGGATTTAGAC
GAGGTAATTCGGCATTACACGAAGTTACAGTATCAGAACCATCGTAAGTC
TGTTAGATTATTATACTCAAGAacatctttccaacggtgtatacaTATGT
TGATGCTGAGAAATTGTTAACAAAGGTGTGTCCACATACATTTGAGAAAG
ACATTAATTTTCTTACCACATAAAGTAACTTGTAACGCCTCATTGAAGCC
ACATAAAAATCGTCCAATCACGATAAACGAAACGTGGACGGGTAAGGAAT
ATAATAAATTCCCAGCGATGGTAACACATATAATCAATAAACAGGATAAT
TTTAAATTCCTTGTTCTGTCCATATAACGTCCAATCAATAACGCACTGAA
AAATTGACCTAAAGCATTAAACGCTTCAGCTACACTGAAATTTAGCCTTA
CTTCGTCCGGAgtcattttaaaactttcttccaaataATATAAAAGTACA
ATTTGGACAGCATTGATTTCCAAGCCAccaataaaaatgagaaaataaga
GATGTAGGTTATTTTCTTGAGTTGCTTCGTCCATTTTTTGTATTCTTCAC
TTTTCTCTAAAGTGGTTGTCTCTGCCATGTCACTATATCAccttttttaa
ataattgtTCGCCTTCGAAGAACTACTGAAAACCAAAATTATATCCCTTG
ATATTATCCAAGTTTGAAAGAGAGTGGGATTTGGTA Run BLAST on NCBI protein sequence of TCONS_00013628-protein >TCONS_00013628-protein ID=TCONS_00013628-protein|Name=TCONS_00013628-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MINKYNALHVFLVVLLALLFIILWFQLTDLSKDLDRMREKFNAMSKSSHD
EQALEKRSGKINSGMDRLTTGEICKSNKHASVPKGSRKLMEWKEILQIDI
ISLCTCYIIIRYCTNAAPSLIVMNAATLFHWPVSWISWLTIAGAGIHFLV
ITMLIKFGVFKGLKSNYFFYLSALNLTLVILAIIPLPRIDNLKSYIPQLL
YLAFLTLAKGWVFFNAQSAGKILLFNTVTSENSCLIDSIRSSAGSLARLF
ALSTSFLCFKYPGYFILPAGTILFIGNCVIVYR Run BLAST on NCBI transcript from alignment at sc0000170:101272..103507 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013628 ID=TCONS_00013628|Name=TCONS_00013628|organism=Clytia hemisphaerica|type=transcript|length=2236bp|location=Sequence derived from alignment at sc0000170:101272..103507 (Clytia hemisphaerica)
TACCAAATCCCACTCTCTTTCAAACTTGGATAATATCAAGGGATATAATT
TTGGTTTTCAGTAGTTCTTCGAAGGCGAacaattatttaaaaaaggTGAT
ATAGTGACATGGCAGAGACAACCACTTTAGAGAAAAGTGAAGAATACAAA
AAATGGACGAAGCAACTCAAGAAAATAACCTACATCtcttattttctcat
ttttattggTGGCTTGGAAATCAATGCTGTCCAAATTGTACTTTTATATt
atttggaagaaagttttaaaatgacTCCGGACGAAGTAAGGCTAAATTTC
AGTGTAGCTGAAGCGTTTAATGCTTTAGGTCAATTTTTCAGTGCGTTATT
GATTGGACGTTATATGGACAGAACAAGGAATTTAAAATTATCCTGTTTAT
TGATTATATGTGTTACCATCGCTGGGAATTTATTATATTCCTTACCCGTC
CACGTTTCGTTTATCGTGATTGGACGATTTTTATGTGGCTTCAATGAGGC
GTTACAAGTTACTTTATGTGGTAAGAAAATTAATGTCTTTCTCAAATGTA
TGTGGACACACCTTTGTTAACAATTTCTCAGCATCAACATAtgtatacac
cgttggaaagatgtTCTTGAGTATAATAATCTAACAGACTTACGATGGTT
CTGATACTGTAACTTCGTGTAATGCCGAATTACCTCGTCTAAATCCATTA
TAGCAGCTATCTGgtctttttaaatgtttatgaATAAAACGTTGAGTAAT
CTGTTTAAAAATCATTCTAActactttgcagaccagatagtCGCTTAGAG
GaaattagacaaggtatgtcggCATTATACACAAACTAACGGTACAATGA
ATTCGGACATATATTTATTCCGTCCTTTATATTTTCATCAGGcgaattca
aaaaatgttatcaTAAAGAAAACGAGTTGATCCAAGTTTTGAGTTGGTAT
GAACTTTTCTTCGCCATTGGAATGGCTATTGGACCTGGTGCACCAGTCTT
TTTCTCGTGGGTCCACCTCATAATTGGTAAGTTTTAATAGTAATGTGGAT
AGTCAATAAACAGAACCATTATTTCTGTACTTAATTGTAATTGTAGCTTT
AGTCGGATCATCGTTACGAAGACTGTCGGCGATCAACGTTAGGATGACAT
GGGTTTACAGCTACAAGACTATTCAAAAATTATACAGTACTCTAAtccca
aaaataaaattttccttaTCTAAATTAGATTCTTATTTTCGAACTACAAT
TATGCTTTCTTGACAAAGACTTTTGTCATCCCCGTTGTCTTCAAGCTCAT
TCATATTCGGGTCAATAGAATGATAATAACTTATATCCCATTTTAGAGGT
TTAAATTTTTGAGGTTAAATTTTTGCAGGTGGATGGATGATCAATAAATA
CAATGCATTACACGTATTCCTTGTAGTCCTGTTAGCCCTATTGTTCATCA
TATTATGGTTCCAACTCACTGATCTATCAAAAGACCTGGATCGTATGAGA
GAGAAATTCAACGCTATGTCAAAATCTTCCCATGATGAACAAGCATTGGA
GAAAAGATCTGGAAAAATAAACAGCGGAATGGACCGTTTAACTACTGGtg
aaatttgcaaaagtaacAAGCATGCTTCCGTGCCAAAAGGATCACGAAAA
CTTATGGAATGGAAAGAGATTTTGCAAATCGATATAATTTCGTTATGTAC
GTGTTATATCATTATAAGATATTGTACTAATGCAGCACCCTCCTTAATCG
TAATGAACGCAGCCACATTATTCCATTGGCCAGTCAGTTGGATTTCATGG
CTCACCATAGCTGGAGCTGGCATTCATTTTCTTGTGATAACAATGCTGAT
AAAATTTGGTGTCTTCAAAGGACTCAAAAGTAATTATTTCTTCTACCTAT
CAGCGTTAAATCTAACCTTGGTTATACTTGCTATCATCCCATTACCAAGG
ATTGACAATCTTAAGAGTTACATACCCCAATTACTTTATTTGGCGTTCCT
AACCCTTGCTAAAGGATGGGTTTTTTTCAATGCCCAGTCAGCAGGGAAGA
TTTTATTGTTTAATACTGTGACATCAGAGAACTCTTGTCTTATTGACAGT
ATTAGATCGTCTGCCGGTTCTCTGGCTCGGCTGTTTGCTTTATCCACGAG
TTTCTTATGCTTTAAATATCCAGGTTATTTTATTTTACCAGCAGGAACTA
TTTTGTTTATAGGGAATTGTGTTATAGTTTACAGAT Coding sequence (CDS) from alignment at sc0000170:101272..103507 >TCONS_00013628 ID=TCONS_00013628|Name=TCONS_00013628|organism=Clytia hemisphaerica|type=CDS|length=849bp|location=Sequence derived from alignment at sc0000170:101272..103507 (Clytia hemisphaerica)
ATGATCAATAAATACAATGCATTACACGTATTCCTTGTAGTCCTGTTAGC
CCTATTGTTCATCATATTATGGTTCCAACTCACTGATCTATCAAAAGACC
TGGATCGTATGAGAGAGAAATTCAACGCTATGTCAAAATCTTCCCATGAT
GAACAAGCATTGGAGAAAAGATCTGGAAAAATAAACAGCGGAATGGACCG
TTTAACTACTGGtgaaatttgcaaaagtaacAAGCATGCTTCCGTGCCAA
AAGGATCACGAAAACTTATGGAATGGAAAGAGATTTTGCAAATCGATATA
ATTTCGTTATGTACGTGTTATATCATTATAAGATATTGTACTAATGCAGC
ACCCTCCTTAATCGTAATGAACGCAGCCACATTATTCCATTGGCCAGTCA
GTTGGATTTCATGGCTCACCATAGCTGGAGCTGGCATTCATTTTCTTGTG
ATAACAATGCTGATAAAATTTGGTGTCTTCAAAGGACTCAAAAGTAATTA
TTTCTTCTACCTATCAGCGTTAAATCTAACCTTGGTTATACTTGCTATCA
TCCCATTACCAAGGATTGACAATCTTAAGAGTTACATACCCCAATTACTT
TATTTGGCGTTCCTAACCCTTGCTAAAGGATGGGTTTTTTTCAATGCCCA
GTCAGCAGGGAAGATTTTATTGTTTAATACTGTGACATCAGAGAACTCTT
GTCTTATTGACAGTATTAGATCGTCTGCCGGTTCTCTGGCTCGGCTGTTT
GCTTTATCCACGAGTTTCTTATGCTTTAAATATCCAGGTTATTTTATTTT
ACCAGCAGGAACTATTTTGTTTATAGGGAATTGTGTTATAGTTTACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013628-exon-sc0000170-1491911889:101272..103507 | TCONS_00013628-exon-sc0000170-1491911889:101272..103507 | Clytia hemisphaerica | exon |
| TCONS_00013628-exon-sc0000170-1510915933:101272..103507 | TCONS_00013628-exon-sc0000170-1510915933:101272..103507 | Clytia hemisphaerica | exon |
| TCONS_00013628-exon-sc0000170-1575043694:101272..103507 | TCONS_00013628-exon-sc0000170-1575043694:101272..103507 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000170 | supercontig | sc0000170:101272..103507 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR020846 | MFS_dom |
Blast
The following BLAST results are available for this feature:
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