TCONS_00013620 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013620
Unique NameTCONS_00013620
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1140

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013620 ID=TCONS_00013620|Name=TCONS_00013620|organism=Clytia hemisphaerica|type=transcript|length=1140bp
GCATTTAGTACTATCTTTGTCATCATTATCTGGAAGCTTAAAAGATAGAT
AAAGAATGTAATCATAATGATGGCCGATCCGAAGATTTCAATCGAACTAA
GTAACGAAAAACAAGAAATCTTTTATCCTGGTGAAAAGATTAGTGGGCAT
GTGGTTATTGAGTTGGATAAACCATTGGAGACAAAAAACGTCTGTTTGAC
TTTTGGAGCACTTATTCCTGGTCGTTCATGTTTCTGTCCTGGTGAAAATA
TCCCAATAGAGATGATGATTGAAAACAATTCATCCAAACTTGTCACAGAA
GCGAGAATCAAACTCATCCAAACGGCGATCTATCGGGAACATCACGAACA
TCACAAAGACGGACCGATAACAGTCCGAGATTACACCATTGCTAAATCGA
AAGTATTATTCAAAGATTCAACTTATTTGCGCTATATCGGAGAAGGACTG
ACCGCTCCTGAAAATACATCTCCAACGAATTGGCGattgaaaatcatcaa
agtaaGATATCACGTTGAAGTGAGGATTGATTTGTCTTGGACTACAAATG
AACCATGCATTGAAATACCGATCATTATCGGGACAGTTCCATTGGGAATT
AAGTCAAAAgatataaatcaaaacaattggTTTTGACTGCTATTCGTCGA
AACGAGGTTACAGTGTAAGAATTCAGCCACAAAATTGGCCTTTTCTCTAT
CAAATTGTTGGAAACATATTATAAAGttgaataatttaaatttaaaaaaa
gctgctttaggcgtacaagctttcgcgagcagaaactttcgcgattttcg
cgaattttggccctttacgcgaaagtaaatgtctttaaaaattctaggaa
gggctattcgcgaaagtttaggctcgcgaaaaattcttgacaaaatagaa
aacctgtaaacttcaaactttgaataaaatgtaacttttatggcactttt
tagcctgctaaaagactaataagtcaaaggacaaatgtttcaagctaatc
caagaagtattcgtccctctaagccattttttcatgtgaaaattctcaat
tttacgtcttggttcgcgaaagtttatgctcgcaaaaaatatttttccgt
taaattcgcgaaagtaaaagtcgtgaatttcgcgattttt
Run BLAST on NCBI

transcript from alignment at sc0000170:437395..442375-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013620 ID=TCONS_00013620|Name=TCONS_00013620|organism=Clytia hemisphaerica|type=transcript|length=4981bp|location=Sequence derived from alignment at sc0000170:437395..442375- (Clytia hemisphaerica)
GCATTTAGTACTATCTTTGTCATCATTATCTGGAAGCTTAAAAGGTATGT
GATATTCGTTTTCGTTTTTGTTTATGTTTTTTTTTGTATTAGTTCCTCCG
CGGTTTCTTTAAAGCCAAATTCAAGTCTTCGTAATTCGATTCAATAATTA
TCCATCCGTTCTCAGAAGCAGTTCTGATTGATTGAGGTTCAAAATTTAAG
ACAACGAGTTTTGCTTCTATTAGATATTGACGATGGCAACCCGAAGAGGA
AAGTTCATAACTTTTGAACCATATTCAGAGAATTGCCAATATGGACAAAA
TAATCAAACTCACACACGAGGATGTGTTGTTTGTTATAAATCTTACTTTT
TTCATATAATTTGTTCGTTCCTAGATAGATAAAGAATGTAATCATAATGA
TGGCCGATCCGAAGATTTCAATCGAACTAAGTAACGAAAAACAAGAAATC
TTTTATCCTGGTGAAAAGATTAGTGGGCATGTGGTTATTGAGTTGGATAA
ACCATTGGAGACAAAAAACGTCTGTTTGACTTTTGGAGGTTTGTTGTTCT
ATCCTGGTTGAGGTTAGGCTGCTTGCATTCACTAACGGATTCGTGCTCCT
TATAGAGGATGCTTAATAAGCTATATTTCATTTGTCCAGAGATTTGCCGC
CTTTAGCTGATATACATTCTATTGAAAACGTTCGAAACGATCGTTTTTGC
GCGCACATCAATGCCAATCAAATCATTAACTTGCCAAGATTTTGTAAAAT
ACATCGAAATAAAAAAAAACCGAACCAGAAAGCGGCTGGTAGATTATTAA
GCAGACCTATACTACCTGGGGTTTTGTAGAGGTCTGCGATTTAGACTAAG
TTGAGGTCTCCGTACACGGAAAACCGTGAATTTTCTGCCCCTGAATTTTC
AATCTTAGGCAAGTACATACTGTATTAAATTAACTAAACACCCCTCTCTC
ACAGCCCTGGTGGAAGTTTTTTGTCTGTTGGGATAGAAATTTCTATTGAA
ATCCTAATGGGGACAGAAATTATATTGTTCCAAGGGGGATGGTTTTGGAG
TACAATTTTCAAACATTGAAATTAGACAGTCAACTTCCTAGCCTGGATAT
CCAAGCTCAAAATTTTAGAAAAAATAAAATTTACCTCAATATACAAAGTT
CTAAAATTATAGAGCTTGGTCTCCCTAGAGAAAGAAAGTGCAAACCCATG
TTTCTGAAACTTTTCTAGTCAACCCAGGTCAGCGAAACAGAAATTAATAA
AAAAGCAGCCTTGCAAGATCTAAAACCATTTAAAACATCCAAAGATTACA
CCAGAGTCCATAAACAAGTTTGCATGCATTATCATGACCAACCACGTTTT
CTTGAAAAATGAACTTGCCTCTGTTTTCTTCTGTTTCGTGTTTTCATGTA
AAAGAAAGCTGTATCTTTACTAGAAACTGGAGGACTATCCTATTTTTGTT
TCAGAATTGCTCCACGCCGTGTAGATTGGTCCGTACGGCTTTAGTGAAGT
GAGTGCAAGCAAGCGGACTGCATTCTCATACGAGAATGCAAAACGCTCTA
GGGAGACCAGGCTGTAAACCAGAACAAAAAAATATCAAAAACTAGACTGA
AATAGTTTACAGCCTGGATATCCAGGCTATCAACTTCCCAGTGGGGCTGA
AATTGTATTTTTTTCATTTTCAGGAAAAGGCGACGTCGTGTGGGTGGAAA
CAATCGCTGATGACATTGAAACTTACCACGGCAAAGAAGAAATTTTTATG
TTCGAACATATCTTCTACGGCCAGAGAAAAAGTAGCTCTAGAGTAGTTCT
ACCGACCGGGAGAACAAGTTACTCTTTTGTTTTCAGTGTACCAAATGGTA
TCCCAAGTTCTTATACTGGAATAAAAATTGGATTTATTCGATATGAAATG
GAAGGTATTAGTAATTAATCCACATTCGATTAGAGTTTGATCAGTATCTT
TTCAGTAGCATAAGGGAAATCTAATTTAATAATAGACGATATCGGCTTAA
CGAAATTCTTCCCGAATGATTACCCATGATGCATTGCGCAAAAAAATTCA
GTAAGTCAATATTGTCCGTGAATTTTTTTGCGCAATGCATCATGGGTAAT
CATTCGGGGAGGAATTCGTAAAGCCGATATCGTCTATTAGATTAATAATT
TCTCCTCGGGATGAATAACTCGTTGTATTTCGGGAAGTCTCAAACATATA
ACTGACTCAACCAAATTTCTCAGCCATCTAGCATAATTTGTTTGAACCCC
TTGGTGGTGGAACCCTTGGTGGTGGACCCTTGGTGGTGGAACCCTTGGTG
GTGGAACCCTTGGTGGTGGAACCCTTGGTGGTGGAACCCTTTTCTCTTAA
GTTAGAGAAATGGAAATTTCACTTCGGACATAATTTTTTTCATTTACAAA
CGTCTTACTTTTGTATCTGAATCCTTTTTTAAATGCATAATTTTTACAAA
GTTAGAGTGCACTTCCTCTCATTTCAACCCTTACGGTGCACTTTGGGAAT
AGTGTTTGAAAACAAGGTCTGCAAGACACATTTTCGACCGTAGCCGCCAG
GTGCCGCGCGGACCCTAAAACCGTCCCAGTCTTTTTTCACACCTAAAAAT
AATAGAAAAAATGTTTAAAAAAAGGATTGGATTGAGTTTAGGGTGGTAAA
TTGAATAATAAAGTGGCACGCGCCTGACCGCGCGACTACGGTCGAAAAGG
TATCCAATGATTATTCATTATTCATCTAAAGAAGAGTGTCTTTATTTTTT
TCTCTTCTTCCTCCTTCACAATAGCTCAAATCACTTTAGCTTACAAATCA
AAAATCAAATTCAAGCGANATCTTCTTCTTCCTTCTTGTAGCTCAAATCA
CTTTAGCTTACAAATCAAATATCAAAGTCAAGCGAACCATACACATTCAT
GAAGTGATTGACTGCAATCTTCCACGTTACCTTAGTGGTATTGGGATGAG
TTGTACTGAAGATGTTGGCTTTTGTTGTTACAAATATGGCCCTATTCGCA
TGTCAGGTATTTTTTAATCAAATTGAAGTTATGTACCAGCTGCCACCAAA
TAGGCCCGGGGGTACTACCCTTGCCACCCCGAAAGGGGTGTATCGCCGAG
GTTAGAAAAATGGACCCTACGTGGGATTCGTTTTTGTGAAAATTTTGCCA
AAATTTGAAAAGAAGTGACCCTGATTTGGACTGAAATTCCAAAGTGTTCT
AGGAATTTTCCACTTTTTATCCAAATTGCCCCCGCCCCCACCCCAAAATA
GGTACCCTGACCTCGTATTCTCATGTTATTATAATGTTTTGATCGCAGGA
TTATTTAGTTGAACAATACATACCAGTTGGCCAAATGAAAAAGATTAAAT
ACTTAGTATTTACAGGGATGATCAGGTGTTTTAAGGTTGTTGGCCTAAAT
TCCTCATTCAGTTCTGAGCGAAACTTTTTTCGGCAAATTTTCTTACAAAA
ATTAAAATTGATTATTGAAAATTCAACTGAGGAAAAAAGTTTTGTCTTTC
TTCAAATAGCACTTATTCCTGGTCGTTCATGTTTCTGTCCTGGTGAAAAT
ATCCCAATAGAGATGATGATTGAAAACAATTCATCCAAACTTGTCACAGA
AGCGAGATTACACCATTGCTAAATCGAAAGGTAATATGAAAGAGATTTTT
TCTAGAGGTTCAGTCCAAGTAACGTAGGTTTCACGATAACATGGACAGTT
CCAGAATATCTATGTGCGTATTACCTGANCACAATCAAACTCATCCAAAC
GGCGATCTATCGGGAACATCACGAACATCACAAAGACGGACCGATAACAG
TCCGAGATTACACCATTGCTAAATCGAAAGGTAATATGAAAGAGATTTTT
TCTAGAGGTTCAGTCCAAGTAACGTAGGTTTCACGATAACATGGACAGTT
CCAGAATATCTATGTGCGTATTACCTGAAACAAGCTTTTTATCTAAGAAT
TTGCTATTTACAAGCTGAAGAGCAATTTGATAAGAACACAAGGCTGAAAA
TTGGCCAAAACCTAAGAACAAATTAAGAACAGGGTGAGCCTCAGATTTCA
GAAATTATTAAGAAAGTACTGATTGAAGTAATGAAGTTTTTAAACCCATT
TTTAGATTTTAAGTAAAGAAACTGAGCGTATTAAGAATATTGTAAGAACT
GCCTGAAAATTTCAAAAAATTAAAAAAAGCCCAGCCTGTATTTCCACGAG
CTTTTCTTATCTTATCGTCTAATTTTTGATTTGTTGATTTCTAGTATTAT
TCAAAGATTCAACTTATTTGCGCTATATCGGAGAAGGACTGACCGCTCCT
GAAAATACATCTCCAACGAATTGGCGATTGAAAATCATCAAAGTAAGATA
TCACGTTGAAGTGAGGATTGATTTGTCTTGGACTACAAATGAACCATGCA
TTGAAATACCGATCATTATCGGGACAGTTCCATTGGGAATTAAGTCAAAA
GATATAAATCAAAACAATTGGTTTTGACTGCTATTCGTCGAAACGAGGTT
ACAGTGTAAGAATTCAGCCACAAAATTGGCCTTTTCTCTATCAAATTGTT
GGAAACATATTATAAAGTTGAATAATTTAAATTTAAAAAAAGCTGCTTTA
GGCGTACAAGCTTTCGCGAGCAGAAACTTTCGCGATTTTCGCGAATTTTG
GCCCTTTACGCGAAAGTAAATGTCTTTAAAAATTCTAGGAAGGGCTATTC
GCGAAAGTTTAGGCTCGCGAAAAATTCTTGACAAAATAGAAAACCTGTAA
ACTTCAAACTTTGAATAAAATGTAACTTTTATGGCACTTTTTAGCCTGCT
AAAAGACTAATAAGTCAAAGGACAAATGTTTCAAGCTAATCCAAGAAGTA
TTCGTCCCTCTAAGCCATTTTTTCATGTGAAAATTCTCAATTTTACGTCT
TGGTTCGCGAAAGTTTATGCTCGCAAAAAATATTTTTCCGTTAAATTCGC
GAAAGTAAAAGTCGTGAATTTCGCGATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007599XLOC_007599Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013620-exon-sc0000170-1575043694:442332..442375TCONS_00013620-exon-sc0000170-1575043694:442332..442375Clytia hemisphaericaexon
TCONS_00013620-exon-sc0000170-1575043694:441838..442001TCONS_00013620-exon-sc0000170-1575043694:441838..442001Clytia hemisphaericaexon
TCONS_00013620-exon-sc0000170-1575043694:438770..438866TCONS_00013620-exon-sc0000170-1575043694:438770..438866Clytia hemisphaericaexon
TCONS_00013620-exon-sc0000170-1575043694:438546..438643TCONS_00013620-exon-sc0000170-1575043694:438546..438643Clytia hemisphaericaexon
TCONS_00013620-exon-sc0000170-1575043694:437395..438131TCONS_00013620-exon-sc0000170-1575043694:437395..438131Clytia hemisphaericaexon
TCONS_00013620-exon-sc0000170-1510915933:442332..442375TCONS_00013620-exon-sc0000170-1510915933:442332..442375Clytia hemisphaericaexon
TCONS_00013620-exon-sc0000170-1510915933:441838..442001TCONS_00013620-exon-sc0000170-1510915933:441838..442001Clytia hemisphaericaexon
TCONS_00013620-exon-sc0000170-1510915933:438770..438866TCONS_00013620-exon-sc0000170-1510915933:438770..438866Clytia hemisphaericaexon
TCONS_00013620-exon-sc0000170-1510915933:438546..438643TCONS_00013620-exon-sc0000170-1510915933:438546..438643Clytia hemisphaericaexon
TCONS_00013620-exon-sc0000170-1510915933:437395..438131TCONS_00013620-exon-sc0000170-1510915933:437395..438131Clytia hemisphaericaexon
TCONS_00013620-exon-sc0000170-1491911889:442332..442375TCONS_00013620-exon-sc0000170-1491911889:442332..442375Clytia hemisphaericaexon
TCONS_00013620-exon-sc0000170-1491911889:441838..442001TCONS_00013620-exon-sc0000170-1491911889:441838..442001Clytia hemisphaericaexon
TCONS_00013620-exon-sc0000170-1491911889:438770..438866TCONS_00013620-exon-sc0000170-1491911889:438770..438866Clytia hemisphaericaexon
TCONS_00013620-exon-sc0000170-1491911889:438546..438643TCONS_00013620-exon-sc0000170-1491911889:438546..438643Clytia hemisphaericaexon
TCONS_00013620-exon-sc0000170-1491911889:437395..438131TCONS_00013620-exon-sc0000170-1491911889:437395..438131Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000170supercontigsc0000170:437395..442375 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0900747	0	0	0	0	0	0	0	0	0	9.78555	9.44846	5.98806	6.38923	0.50508	1.68006	0	0.0871608	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013620 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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