TCONS_00013613 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013613
Unique NameTCONS_00013613
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1357

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013613 ID=TCONS_00013613|Name=TCONS_00013613|organism=Clytia hemisphaerica|type=transcript|length=1357bp
CGTAGGTGTAttatgagaaaaatataaaaaccgAATTTAAAGATAACGTC
AAATTGATTGGAATTGATATATCCCCATAACACACCTTAATTTCCACGTG
ACCTTAATGGTATAAATAGTGGTTTTAAAATCAGTAATAAACATCGACTT
CTGATACAAACAGTACCGGTTTTGAAGAAGCGAATCAAAGTCACCAACAA
TTCTTTTGAGTTCGTAATGGATATGGCAAATATGAACGTAGGAGCAATGC
TTTTCAACAAAGAACTTCCTTTTGTTTGTGAATTAGATGGTGAAAttaat
ggccataaattctcaGTTAGAGGCAAAGGGATTGGAAACTCAGCTCAAGG
ATTGACGCACGGTATTCATGTTTGTACGTCCGGCGAACTTCCCGTATCAT
GGACCGCTATCACGCATAACCTTCAATATGGATTATTATGTTTTTCCCAA
TACCCTCATGACATCAATGATTACATCAAAAGTACCTTCCCTGAAGGCTA
TACCAAAGAACGTACCTCTAATTTCGATGGGGACGGCAAATATACATCAC
GTCACGTCATTACATACGAAAACGGCTGTATTTACAATCGCGTAACGATC
AACGGATCTGGATTCAGCGATGATGGAAATGTTCTTGGTAAAAATCTAGC
TGATTATGAAAAACCAGTCTGTTCCATGTACTTCCCTGGAAAAGATGGCT
TGAGAGCCGAAATTTGTaagTTAACAGAAACTAAAGACGGGGGTTACCAA
TCCTGTCGATTGGAAGATCAAGTAATCAGACCTATTTCACAAGGTCCCAC
AGTTCCGATGACTCATCACTATAACTACAGCTCCGTAGAATATAGCAAAG
ATGCCAATGAAACAAGAGACCATATTGTCATGAAAGAAATCACCAAAGTC
AGCCACTTCATTCAATAACTGACATATTATTAGATTGAGGAGATTTGGAG
TAAGGTTATCACTAAaatcaatgcaatttttaaaactAATGTAATTTTTG
Tgtagttttgtaattttcttgcacacttttttgtaatctttgcggcagtt
ttgtatttttctgcgcacttttgttatttttgagcTGCGAATAATTAATT
AAAATAACATAATTAGAGTGGTTTATCAGCTCCCTAGCGTAAATATTTGT
TGTAGCTCAGTAAATCGAGTTAATGCGAGTTATAAGCTTTGAAATGGGGC
CTGGTTAGTTTCAAAgttctttttttcaagttttagtgtcttttttagaa
aatgaatcAACTATTACAAAGAATACGTGATGTGTGACGATTTAGAATAA
ATTATCTTAAAATTCCGAGTTAAAAGATTTATAACTCGGGATTACGTTTA
AGTTCTG
Run BLAST on NCBI

transcript from alignment at sc0000170:387874..392967-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013613 ID=TCONS_00013613|Name=TCONS_00013613|organism=Clytia hemisphaerica|type=transcript|length=5094bp|location=Sequence derived from alignment at sc0000170:387874..392967- (Clytia hemisphaerica)
CGTAGGTGTATTATGAGAAAAATATAAAAACCGAATTTAAAGATAACGTC
AAATTGATTGGAATTGATATATCCCCATAACACACCTTAATTTCCACGTG
ACCTTAATGGTATAAATAGTGGTTTTAAAATCAGTAATAAACATCGACTT
CTGATACAAACAGTACCGGTTTTGAAGAAGCGAATCAAAGTCACCAACAA
TTCTTTTGAGGTAAGTACCAAACAATTATATGTACAGTAGAGTCCTGTTA
ACTCGATTCTCTATAACTCGAATGTCTCCTTAACTCGAATAGACTCCCCC
TTCTCATAGACCCGGTGGGATTTTATCAGCCAGTGGGGGCAAAAATAACG
GACCTCGATGGGGATTGATATATATTCCCATGTTTTTTATTGCTGGGGAT
TTGAATTACATTGTTTTCTAGCCAGAAAATTCAGTGGGGATGTGCTTATG
TGATTGTTTTCAACAGGGACAAAAATCAGAGTATAATTTTCCACAGGGAA
CGATATTTTGGCCAATTTTTCAAGTGAAAAAGGTTCTTTGAGGAGGGGGT
GTGAATAGCTTCTAGGATCCCTTCACTTAACAATGCCAAGGCTTACTCCA
TAGCTCGAAGTTTCTTCAACTTGGATAAATTTGTGTTCCCCGTGCGTGTA
CTTCACAGTAATATAAGTATTCCTCTGATTTTTCTCTTTTTTCAACTATG
GAGATTCCTATCCAGCCTTCCCACATTCATTTTTCTAATTTTAATCTGTA
TAAACACAATCATGGTCGAAATAGATTGAGATTTTAGTGTATTTTAACGT
CTTTGAGAATCTAAAGTTCGGGCGAGGATTGCTATTTTAGCACTTCAACT
TTCTTTCATTGAATATTTCGATTTTGGAGGGTTCGGTGGCTTCTTGGCTA
TATTAAAAGCCTTATTGGAGCAAATTTGAGCTTTTAAATCCTGAGATCCT
AAGGTCCTCCTAAGTCTCATGTCAGACTTAAAACTCTACTTTCCAATTGT
AGTTTAACACGCTTAAAAATCATTTGTGGTGTTTGAAATTTCGCAGGGAA
ATCCCCTTTAACTCAAATATTTTGTCTATGATTGCATTAACCCTTTCTTG
AACCCAACTTTGTACCCAGAGCCACTTGCATCACTTTTTGATTTTACCTA
AGGACGTTGGTACATTTGCTAGTGATGCTACGAAAATCATAGAAAGCGTA
CTAAGAGAATGTGACCGAAATTTATTTGAATAATTGGAAAAATGTATGAG
TTGACCCGGGCGAAGACACATTTATGAATCTGCGTCTTTCTGCAACTGAT
ACGGCTAGCTTCTGATTTGTCTACCTAGATCGTGATTGGCTGGGGACGAT
GGTTAATCAGCACTTTACCGTCCTCGATTTTTCGGGTCAAATTCCTTTAA
GTCACTCTGCAATCCTCAAGAGTGCAAATACATGAACTCTCTATAGACTG
ATTCCGTGTGACGTCATTTTCACCCACGATCAACCATTTTTTATTAGGAA
TGGTAGAAAGAATATGTACAGGATGGTTTAGTAAAAATTTGATTACTCAA
AGTCTTCAAATATTTCCCGTTTGGACCTGCACATAGTTTTTTTGTTTCGT
GGGTGAAATTTATTTCAGTTAGAAACAGGCAGCTTGCTTGAGGTTTTGCT
TGAAGATAGTCCCTAACTGGATTTAGCCGAATCGGTCTATTCACCAAAAA
TCGGCTTTAAAATGTGAGTCAAGAAGCACTCTAAAATGCGAGTCAAGAAG
GACTCTAAAATAAGAGTCAAAATATCAACTTGTTTATCTCTTTCATTTCT
AGTTCGTAATGGATATGGCAAATATGAACGTAGGAGCAATGCTTTTCAAC
AAAGAACTTCCTTTTGTTTGTGAATTAGATGGTGAAATTAATGGCCATAA
ATTCTCAGTTAGAGGCAAAGGGATTGGAAACTCAGCTCAAGGATTGACGC
ACGGTATTCATGTTTGTACGTCCGGCGAACTTCCCGTATCATGGACCGCT
ATCACGCATAACCTTCAATATGGATTATTGTGAGTAAATTCTTCCAACTT
CGTTCCCGTGTACCCAGACTTCTTCGACGTTACTAATGGGCCGGTGACAG
AGAACATTATCTGGGTGCTATCAATAACCATCAAGACGCCAATAATACAC
CAGGAACGAGGCTTTATTAATATTCCTTTGAATTTCTTAATAGTTTTCCG
CCTAAAAAGTAGTCTGAATCGCAGACCTCTACAAAACCCCAGGTAGTATA
GTCTATAAGGAGCACGAATCCGTTAGTAGATGCCAGCAGCCTACCTAAAA
AGATGAAAAATAATTCCCTAAGATCACAGATACAACAGATAGACCAAATA
TTACCAATGAGAAAATCTAAGACCTTATAGAAACTATATTGATGGATACG
CCGCCTCGTTGCTAGCAAGCACCTTACCAATAACAATGGTACCAAACCCA
TTGTCTAACTCTCAAGTTATAAGCTTTTATGCCAGTTTGAAGTTTTGGAT
TTCAAAAAAAAGTCGAAAACGTTCTCACATTTTTTAATGTTGCACGCTGG
AAAGGTTAATTCTCTTTTAGATGTTTTTCCCAATACCCTCATGACATCAA
TGATTACATCAAAAGTACCTTCCCTGAAGGCTATACCAAAGAACGTACCT
CTAATTTCGATGGGGACGGCAAATATACATCACGTCACGTCATTACATAC
GAAAACGGCTGTATTTACAATCGCGTAACGATCAACGGATCTGGATTCAG
CGATGATGGAAATGTTCTTGGTAAAAATCTAGCTGATTATGAAAAACCAG
TCTGTTCCATGTACTTCCCTGGAAAAGATGGCTTGAGAGCCGAAATTTGT
AAGGTAAAATATTTTTACGGCTGGCTCCATTAAGGGATATTATGTATTAA
AGGATGTCATTAAACGTTCCCTCGCTGCATATGATGATGAGCACGCCAAA
AAATAATATCTTTAACAAAGATTTCGAATCCTTTTCTCTTACGATTTAAT
GTAATTTCCAAGAGAGAAAGAGTCGAGTAAATTAACTCTGACTGGCTAAA
TCAACAGTTAGACCAAACAGAATATAAATTTTGATAAAATTCAGAAAAGA
TTGTAGTTTGTGCGCGTTGAAAAGATAATTCTTGAGTGGAATCTAATCAA
ATAGAAATTTTTTCTCATGAAGATAAAATTGATAAAGCAACATTTTGCTT
CACCGGGTTTTAATCCCCTCTTTTGGTGGAGAACCATCACTAGACAATGA
AATTCATTATAATAATTTATATATTTTTGAATTATTTACAGTTAACAGAA
ACTAAAGACGGGGGTTACCAATCCTGTCGATTGGAAGATCAAGTAATCAG
ACCTATTTCACAAGGTCCCACAGTTCCGATGACTCATCACTATAACTACA
GCTCCGTAGAATATAGCAAAGATGCCAATGAAACAAGAGACCATATTGTC
ATGAAAGAAATCACCAAAGTCAGCCACTTCATTCAATAACTGACATATTA
TTAGATTGAGGAGATTTGGAGCAAGGTTATCATTAAAATCAATGCAATTT
TTAAAACTAATGTAATTTTTGTGTAGTTTTGTAATTTTCTTGCACACTTT
TTTGTAATCTTTGCGGCAGTTTTGTATTTTTCTGCGCACTTTTGTTATTT
TTGAGCTGCGAATAATTAATTAAAATAACATAATTAGAGTGGTTTATCAG
CTCCCTAGCGTAAATATTTGTTGTAGCTCAGTAAATCGAGTTAATGCGAG
TTATATACCCTGAGTATCAGAGGTTAAGTTTTCAAAGAAAATAGTAACTC
TGAAGACAAATAATAGAAATTTTATCGCGCATGTGTCAATCTAATCACTG
TAGAAAAAATCAAAGATGGAGAGCAAATATTACCATATTAATGTCTAGCN
TATAAGCTTTGAAATGGGGCCTGGTTAGTTTCAAAGTTCTTTTTTTCAAG
TTTTAGTGTCTTTTTTAGAAAATGAATCAACTATTACAAAGAATACGTGA
TGTGTGACGATTTAGAATAAATTATCTTAAAATTCCGAGTTAAAAGATTT
ATAACTCGGGATTGCGTTTAAGTTCTGGTTGCTAGGAANGCTGCATATGA
TGATGAGCACGCCAAAAAATAATATCTTTAACAAAGATTTCGAATCCTTT
TCTCTTACGATTTAATGTAATTTCCAAGAGAGAAAGAGTCGAGTAAATTA
ACTCTGACTGGCTAAATCAACAGTTAGACCAAACAGAATATAAATTTTGA
TAAAATTCAGAAAAGATTGTAGTTTGTGCGCGTTGAAAAGATAATTCTTG
AGTGGAATCTAATCAAATAGAAATTTTTTCTCATGAAGATAAAATTGATA
AAGCAACATTTTGCTTCACCGGGTTTTAATCCCCTCTTTTGGTGGAGAAC
CATCACTAGACAATGAAATTCATTATAATAATTTATATATTTTTGAATTA
TTTACAGTTAACAGAAACTAAAGACGGGGGTTACCAATCCTGTCGATTGG
AAGATCAAGTAATCAGACCTATTTCACAAGGTCCCACAGTTCCGATGACT
CATCACTATAACTACAGCTCCGTAGAATATAGCAAAGATGCCAATGAAAC
AAGAGACCATATTGTCATGAAAGAAATCACCAAAGTCAGCCACTTCATTC
AATAACTGACATATTATTAGATTGAGGAGATTTGGAGTAAGGTTATCACT
AAAATCAATGCAATTTTTAAAACTAATGTAATTTTTGTGTAGTTTTGTAA
TTTTCTTGCACACTTTTTTGTAATCTTTGCGGCAGTTTTGTATTTTTCTG
CGCACTTTTGTTATTTTTGAGCTGCGAATAATTAATTAAAATAACATAAT
TAGAGTGGTTTATCAGCTCCCTAGCGTAAATATTTGTTGTAGCTCAGTAA
ATCGAGTTAATGCGAGTTATAAGCTTTGAAATGGGGCCTGGTTAGTTTCA
AAGTTCTTTTTTTCAAGTTTTAGTGTCTTTTTTAGAAAATGAATCAACTA
TTACAAAGAATACGTGATGTGTGACGATTTAGAATAAATTATCTTAAAAT
TCCGAGTTAAAAGATTTATAACTCGGGATTACGTTTAAGTTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007598XLOC_007598Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013613-exon-sc0000170-1575043694:392758..392967TCONS_00013613-exon-sc0000170-1575043694:392758..392967Clytia hemisphaericaexon
TCONS_00013613-exon-sc0000170-1575043694:390939..391165TCONS_00013613-exon-sc0000170-1575043694:390939..391165Clytia hemisphaericaexon
TCONS_00013613-exon-sc0000170-1575043694:390115..390397TCONS_00013613-exon-sc0000170-1575043694:390115..390397Clytia hemisphaericaexon
TCONS_00013613-exon-sc0000170-1575043694:387874..388510TCONS_00013613-exon-sc0000170-1575043694:387874..388510Clytia hemisphaericaexon
TCONS_00013613-exon-sc0000170-1510915933:392758..392967TCONS_00013613-exon-sc0000170-1510915933:392758..392967Clytia hemisphaericaexon
TCONS_00013613-exon-sc0000170-1510915933:390939..391165TCONS_00013613-exon-sc0000170-1510915933:390939..391165Clytia hemisphaericaexon
TCONS_00013613-exon-sc0000170-1510915933:390115..390397TCONS_00013613-exon-sc0000170-1510915933:390115..390397Clytia hemisphaericaexon
TCONS_00013613-exon-sc0000170-1510915933:387874..388510TCONS_00013613-exon-sc0000170-1510915933:387874..388510Clytia hemisphaericaexon
TCONS_00013613-exon-sc0000170-1491911889:392758..392967TCONS_00013613-exon-sc0000170-1491911889:392758..392967Clytia hemisphaericaexon
TCONS_00013613-exon-sc0000170-1491911889:390939..391165TCONS_00013613-exon-sc0000170-1491911889:390939..391165Clytia hemisphaericaexon
TCONS_00013613-exon-sc0000170-1491911889:390115..390397TCONS_00013613-exon-sc0000170-1491911889:390115..390397Clytia hemisphaericaexon
TCONS_00013613-exon-sc0000170-1491911889:387874..388510TCONS_00013613-exon-sc0000170-1491911889:387874..388510Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000170supercontigsc0000170:387874..392967 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.465587	0.317815	0.210865	0.206298	0.690657	0.992303	0.359151	0.448311	0.313873	0.0485978	0.330192	0.0930235	0.402542	0	0	0	0	0	0	0	1.4405	0.922196	50.1656	61.4777	93.0502	67.2083	0.127682	0	0.0514383	0.0526502
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013613 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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