TCONS_00013579 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013579
Unique NameTCONS_00013579
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1961

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013579 ID=TCONS_00013579|Name=TCONS_00013579|organism=Clytia hemisphaerica|type=transcript|length=1961bp
TGAAAGGAATTTACTGTGACGGTATCATTTCTTTCGATTGcaaatgcaaa
ttttcaaaggtCTTTACTCAGTATAAAATCAACTGTTAAACGGATGTTTC
ACAAATATTTTCCTGAGAGACATATACATATACACAGGCTTAAAAAGACA
GTTTGCCTGTGTGGCGAAAAGCAGATTCTTTTGGTGTAGCTGAACCATAT
AGTTCAACGTGTACACGTGCAGCAGTCAAACGTGGTAAGAAGTTAGCAGT
CTTTTTACGTAGTTTGTAAGAAACTGCTTTAATTTTGACCCGCTGTAAAT
CGCATACACAATCTACTTGTAAACATTAAGCAAGTTCTTTATAGACAGCG
ATATTGGAGCAGTCTTTTTTGGACAAGAGCCTACACCAGAAGTATTTACT
TCAGAAGCATGGATAACAAAGCAGCAGATATTGATTCTGAATTCAATGGT
AATGAGCACACCGGGACTGAAGTCATCGACAACAACTCTGTTACACCAGA
AGTTCTAGCGAAACAACCCTGCCCTACACGAAAGAGAAGATATCAGTGGT
ATCGAATCAATCCAGATGCTATCCCATCTAAATTAGCATATTTCTTCGAA
TGTGGACGTCGAATAGGGTTTAATCCGAACTTAATCTTATTTTTCACCAG
CATTGGATTGAATAAAGCTGAATCTGGATTCATTATCGGTCTCAGGATGA
TTGGTATGATACTTGGGGCACCATTCTGGGGATTGATCGCCGACAAATGG
CAATGTCACCGAACGGTCATCATTCTAATGACTATATCAACACTTCTGGC
AATCACTACTCAACCCTTCATCAGTGTTTTTTACGGAGATCCTGATATGA
ATCAATGTCCTTATCAAAAGATTAACACTAAATCAACGACACTAAATAAC
TCAATCGAGCTATTATCGAACTGTAAAACATGCTACAACTCGACTTTCTC
AAATAACTCTAAATCCTATCTATCAAATGTGGAAAATACTCAAAACAATA
CACCAGAGAGATTTGGGGCCTTATTTTTAGCTATGTTTTCCATCAGTCTT
TGGTTATCATTCGCGGAAGGAAGCTCAATAGCTTTCATCGACACGGGAAC
GTTACGCCGTAGCCAGTTATCAACGCAACGTAAATTCGTTTACGGTCATC
AACGTATGTTCTCTGCCATCGGCGGCGCTGTTGGAATCTTTACGGCAAAC
TTAGCGGTAGATTATTTCCCGCAAGCAGCCATAACCTGCTACACTGGCAT
TTTCGGCGTATACGCATTTTATACCATATTTTATGCACTGTTCACTATCA
TTTTGTACCGTGGCTTAACCTTCAAAGAGGTGTCTAGCAACCAGGGTAGT
AACATGGAAAACAAAACTACTAACGACACTGAAAATCCGTCCTTAGGTAT
TGAACATCAGGGAGATAACCATACTTGTGGAGATAACAAAACAATCAAAG
ACAAAAAGAAGCTACACCGTATCTTGATTCAATCTCTACGGAAACCCGAC
GTTATTTTCCTATACGTGACAACATTTGTAAGTGGTTTGGTATACTCACA
ACACACAAGTTTCCTCTATGTTTACCTAAAGGAATTAGACGCTCCATCAA
TACTGTTAACCCTCTCAATAATTTTCTCAaacatttcttcaatttttggc
tttttctttGCGCAGAAAGTAATCAATTTATTAGGCGGAACATGGCGCAC
CATCCCGGTGACTTTCGCTTTTTATTTCATCCGATATTGCGGTGTTGGTC
TTATTAAAAACCCATGGcttgttttgatctttcaacCTCTACACGCTGTA
ACCGCTACACTGTATGTCGCAAATGGATTAACTTATCTGAAAGAAACCAG
CCCCTTGCCAGTCATTACAACCCTGGTTTCCCTATTCAATACAACTCATT
ATGGACTTGGAACCATAGTTGGATCAAGTTTGAGTGGTTTAATTTACGAA
AAATACGGTGG
Run BLAST on NCBI

protein sequence of TCONS_00013579-protein

>TCONS_00013579-protein ID=TCONS_00013579-protein|Name=TCONS_00013579-protein|organism=Clytia hemisphaerica|type=polypeptide|length=517bp
MDNKAADIDSEFNGNEHTGTEVIDNNSVTPEVLAKQPCPTRKRRYQWYRI
NPDAIPSKLAYFFECGRRIGFNPNLILFFTSIGLNKAESGFIIGLRMIGM
ILGAPFWGLIADKWQCHRTVIILMTISTLLAITTQPFISVFYGDPDMNQC
PYQKINTKSTTLNNSIELLSNCKTCYNSTFSNNSKSYLSNVENTQNNTPE
RFGALFLAMFSISLWLSFAEGSSIAFIDTGTLRRSQLSTQRKFVYGHQRM
FSAIGGAVGIFTANLAVDYFPQAAITCYTGIFGVYAFYTIFYALFTIILY
RGLTFKEVSSNQGSNMENKTTNDTENPSLGIEHQGDNHTCGDNKTIKDKK
KLHRILIQSLRKPDVIFLYVTTFVSGLVYSQHTSFLYVYLKELDAPSILL
TLSIIFSNISSIFGFFFAQKVINLLGGTWRTIPVTFAFYFIRYCGVGLIK
NPWLVLIFQPLHAVTATLYVANGLTYLKETSPLPVITTLVSLFNTTHYGL
GTIVGSSLSGLIYEKYG
Run BLAST on NCBI

transcript from alignment at sc0000170:366156..368382+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013579 ID=TCONS_00013579|Name=TCONS_00013579|organism=Clytia hemisphaerica|type=transcript|length=2227bp|location=Sequence derived from alignment at sc0000170:366156..368382+ (Clytia hemisphaerica)
TGAAAGGAATTTACTGTGACGGTATCATTTCTTTCGATTGcaaatgcaaa
ttttcaaaggtCTTTACTCAGTATAAAATCAACTGTTAAACGGATGTTTC
ACAAATATTTTCCTGAGAGACATATACATATACACAGGCTTAAAAAGACA
GTTTGCCTGTGTGGCGAAAAGCAGATTCTTTTGGTGTAGCTGAACCATAT
AGTTCAACGTGTACACGTGCAGCAGTCAAACGTGGTAAGAAGTTAGCAGT
CTTTTTACGTAGTTTGTAAGAAACTGCTTTAATTTTGACCCGCTGTAAAT
CGCATACACAATCTACTTGTAAACATTAAGCAAGTTCTTTATAGACAGCG
ATATTGGAGCAGTCTTTTTTGGACAAGAGCCTACACCAGAAGTATTTACT
TCAGAAGCATGGATAACAAAGCAGCAGATATTGATTCTGAATTCAATGGT
AATGAGCACACCGGGACTGAAGTCATCGACAACAACTCTGTTACACCAGA
AGTTCTAGCGAAACAACCCTGCCCTACACGAAAGAGAAGATATCAGTGGT
ATCGAATCAATCCAGATGCTATCCCATCTAAATTAGCATATTTCTTCGAA
TGTGGACGTCGAATAGGGTTTAATCCGAACTTAATCTTATTTTTCACCAG
CATTGGATTGAATAAAGCTGAATCTGGATTCATTATCGGTCTCAGGTAAG
AAATGTTCTCTTATTGATTTCAGTTTTTTGGTCAGATATGAACATCCTGA
TGAAAggcttgtttgtttgttttttggaaTTTCGGTTTTTGCTTAGACGA
TTTGACGGTATTTGGGAAAACAATTGACGGGATGGTGTAGCCCCCCTGAA
GCCCCTCGTAAAAGTCTATAACAAGACTTGACGGGTAACCTCACCTTttg
ttttatgactttttgcaTGTTTTACGGTAATTCGATATAATTCTATTCTT
TCGTATTACAGGATGATTGGTATGATACTTGGGGCACCATTCTGGGGATT
GATCGCCGACAAATGGCAATGTCACCGAACGGTCATCATTCTAATGACTA
TATCAACACTTCTGGCAATCACTACTCAACCCTTCATCAGTGTTTTTTAC
GGAGATCCTGATATGAATCAATGTCCTTATCAAAAGATTAACACTAAATC
AACGACACTAAATAACTCAATCGAGCTATTATCGAACTGTAAAACATGCT
ACAACTCGACTTTCTCAAATAACTCTAAATCCTATCTATCAAATGTGGAA
AATACTCAAAACAATACACCAGAGAGATTTGGGGCCTTATTTTTAGCTAT
GTTTTCCATCAGTCTTTGGTTATCATTCGCGGAAGGAAGCTCAATAGCTT
TCATCGACACGGGAACGTTACGCCGTAGCCAGTTATCAACGCAACGTAAA
TTCGTTTACGGTCATCAACGTATGTTCTCTGCCATCGGCGGCGCTGTTGG
AATCTTTACGGCAAACTTAGCGGTAGATTATTTCCCGCAAGCAGCCATAA
CCTGCTACACTGGCATTTTCGGCGTATACGCATTTTATACCATATTTTAT
GCACTGTTCACTATCATTTTGTACCGTGGCTTAACCTTCAAAGAGGTGTC
TAGCAACCAGGGTAGTAACATGGAAAACAAAACTACTAACGACACTGAAA
ATCCGTCCTTAGGTATTGAACATCAGGGAGATAACCATACTTGTGGAGAT
AACAAAACAATCAAAGACAAAAAGAAGCTACACCGTATCTTGATTCAATC
TCTACGGAAACCCGACGTTATTTTCCTATACGTGACAACATTTGTAAGTG
GTTTGGTATACTCACAACACACAAGTTTCCTCTATGTTTACCTAAAGGAA
TTAGACGCTCCATCAATACTGTTAACCCTCTCAATAATTTTCTCAaacat
ttcttcaatttttggctttttctttGCGCAGAAAGTAATCAATTTATTAG
GCGGAACATGGCGCACCATCCCGGTGACTTTCGCTTTTTATTTCATCCGA
TATTGCGGTGTTGGTCTTATTAAAAACCCATGGcttgttttgatctttca
acCTCTACACGCTGTAACCGCTACACTGTATGTCGCAAATGGATTAACTT
ATCTGAAAGAAACCAGCCCCTTGCCAGTCATTACAACCCTGGTTTCCCTA
TTCAATACAACTCATTATGGACTTGGAACCATAGTTGGATCAAGTTTGAG
TGGTTTAATTTACGAAAAATACGGTGG

Coding sequence (CDS) from alignment at sc0000170:366156..368382+

>TCONS_00013579 ID=TCONS_00013579|Name=TCONS_00013579|organism=Clytia hemisphaerica|type=CDS|length=3102bp|location=Sequence derived from alignment at sc0000170:366156..368382+ (Clytia hemisphaerica)
ATGGATAACAAAGCAGCAGATATTGATTCTGAATTCAATGGTAATGAGCA
CACCGGGACTGAAGTCATCGACAACAACTCTGTTACACCAGAAGTTCTAG
CGAAACAACCCTGCCCTACACGAAAGAGAAGATATCAGTGGTATCGAATC
AATCCAGATGCTATCCCATCTAAATTAGCATATTTCTTCGAATGTGGACG
TCGAATAGGGTTTAATCCGAACTTAATCTTATTTTTCACCAGCATTGGAT
TGAATAAAGCTGAATCTGGATTCATTATCGGTCTCAGGATGATTGGTATG
ATACTTGGGGCACCATTCTGGGGATTGATCGCCGACAAATGGCAATGTCA
CCGAACGGTCATCATTCTAATGACTATATCAACACTTCTGGCAATCACTA
CTCAACCCTTCATCAGTGTTTTTTACGGAGATCCTGATATGAATCAATGT
CCTTATCAAAAGATTAACACTAAATCAACGACACTAAATAACTCAATCGA
GCTATTATCGAACTGTAAAACATGCTACAACTCGACTTTCTCAAATAACT
CTAAATCCTATCTATCAAATGTGGAAAATACTCAAAACAATACACCAGAG
AGATTTGGGGCCTTATTTTTAGCTATGTTTTCCATCAGTCTTTGGTTATC
ATTCGCGGAAGGAAGCTCAATAGCTTTCATCGACACGGGAACGTTACGCC
GTAGCCAGTTATCAACGCAACGTAAATTCGTTTACGGTCATCAACGTATG
TTCTCTGCCATCGGCGGCGCTGTTGGAATCTTTACGGCAAACTTAGCGGT
AGATTATTTCCCGCAAGCAGCCATAACCTGCTACACTGGCATTTTCGGCG
TATACGCATTTTATACCATATTTTATGCACTGTTCACTATCATTTTGTAC
CGTGGCTTAACCTTCAAAGAGGTGTCTAGCAACCAGGGTAGTAACATGGA
AAACAAAACTACTAACGACACTGAAAATCCGTCCTTAGGTATTGAACATC
AGGGAGATAACCATACTTGTGGAGATAACAAAACAATCAAAGACAAAAAG
AAGCTACACCGTATCTTGATTCAATCTCTACGGAAACCCGACGTTATTTT
CCTATACGTGACAACATTTGTAAGTGGTTTGGTATACTCACAACACACAA
GTTTCCTCTATGTTTACCTAAAGGAATTAGACGCTCCATCAATACTGTTA
ACCCTCTCAATAATTTTCTCAaacatttcttcaatttttggctttttctt
tGCGCAGAAAGTAATCAATTTATTAGGCGGAACATGGCGCACCATCCCGG
TGACTTTCGCTTTTTATTTCATCCGATATTGCGGTGTTGGTCTTATTAAA
AACCCATGGcttgttttgatctttcaacCTCTACACGCTGTAACCGCTAC
ACTGTATGTCGCAAATGGATTAACTTATCTGAAAGAAACCAGCCCCTTGC
CAGTCATTACAACCCTGGTTTCCCTATTCAATACAACTCATTATGGACTT
GGAACCATAGTTGGATCAAGTTTGAGTGGTTTAATTTACGAAAAATACGG
TATGGATAACAAAGCAGCAGATATTGATTCTGAATTCAATGGTAATGAGC
ACACCGGGACTGAAGTCATCGACAACAACTCTGTTACACCAGAAGTTCTA
GCGAAACAACCCTGCCCTACACGAAAGAGAAGATATCAGTGGTATCGAAT
CAATCCAGATGCTATCCCATCTAAATTAGCATATTTCTTCGAATGTGGAC
GTCGAATAGGGTTTAATCCGAACTTAATCTTATTTTTCACCAGCATTGGA
TTGAATAAAGCTGAATCTGGATTCATTATCGGTCTCAGGATGATTGGTAT
GATACTTGGGGCACCATTCTGGGGATTGATCGCCGACAAATGGCAATGTC
ACCGAACGGTCATCATTCTAATGACTATATCAACACTTCTGGCAATCACT
ACTCAACCCTTCATCAGTGTTTTTTACGGAGATCCTGATATGAATCAATG
TCCTTATCAAAAGATTAACACTAAATCAACGACACTAAATAACTCAATCG
AGCTATTATCGAACTGTAAAACATGCTACAACTCGACTTTCTCAAATAAC
TCTAAATCCTATCTATCAAATGTGGAAAATACTCAAAACAATACACCAGA
GAGATTTGGGGCCTTATTTTTAGCTATGTTTTCCATCAGTCTTTGGTTAT
CATTCGCGGAAGGAAGCTCAATAGCTTTCATCGACACGGGAACGTTACGC
CGTAGCCAGTTATCAACGCAACGTAAATTCGTTTACGGTCATCAACGTAT
GTTCTCTGCCATCGGCGGCGCTGTTGGAATCTTTACGGCAAACTTAGCGG
TAGATTATTTCCCGCAAGCAGCCATAACCTGCTACACTGGCATTTTCGGC
GTATACGCATTTTATACCATATTTTATGCACTGTTCACTATCATTTTGTA
CCGTGGCTTAACCTTCAAAGAGGTGTCTAGCAACCAGGGTAGTAACATGG
AAAACAAAACTACTAACGACACTGAAAATCCGTCCTTAGGTATTGAACAT
CAGGGAGATAACCATACTTGTGGAGATAACAAAACAATCAAAGACAAAAA
GAAGCTACACCGTATCTTGATTCAATCTCTACGGAAACCCGACGTTATTT
TCCTATACGTGACAACATTTGTAAGTGGTTTGGTATACTCACAACACACA
AGTTTCCTCTATGTTTACCTAAAGGAATTAGACGCTCCATCAATACTGTT
AACCCTCTCAATAATTTTCTCAaacatttcttcaatttttggctttttct
ttGCGCAGAAAGTAATCAATTTATTAGGCGGAACATGGCGCACCATCCCG
GTGACTTTCGCTTTTTATTTCATCCGATATTGCGGTGTTGGTCTTATTAA
AAACCCATGGcttgttttgatctttcaacCTCTACACGCTGTAACCGCTA
CACTGTATGTCGCAAATGGATTAACTTATCTGAAAGAAACCAGCCCCTTG
CCAGTCATTACAACCCTGGTTTCCCTATTCAATACAACTCATTATGGACT
TGGAACCATAGTTGGATCAAGTTTGAGTGGTTTAATTTACGAAAAATACG
GT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007586XLOC_007586Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013579-proteinTCONS_00013579-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013579-exon-sc0000170-1491911889:366156..366850TCONS_00013579-exon-sc0000170-1491911889:366156..366850Clytia hemisphaericaexon
TCONS_00013579-exon-sc0000170-1510915933:366156..366850TCONS_00013579-exon-sc0000170-1510915933:366156..366850Clytia hemisphaericaexon
TCONS_00013579-exon-sc0000170-1575043694:366156..366850TCONS_00013579-exon-sc0000170-1575043694:366156..366850Clytia hemisphaericaexon
TCONS_00013579-exon-sc0000170-1491911889:367117..368382TCONS_00013579-exon-sc0000170-1491911889:367117..368382Clytia hemisphaericaexon
TCONS_00013579-exon-sc0000170-1510915933:367117..368382TCONS_00013579-exon-sc0000170-1510915933:367117..368382Clytia hemisphaericaexon
TCONS_00013579-exon-sc0000170-1575043694:367117..368382TCONS_00013579-exon-sc0000170-1575043694:367117..368382Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000170supercontigsc0000170:366156..368382 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0592404	0	0.0224314	0.0273081	0	0.182241	0.609327	0.136513	1.22593	0.0410316	0.094404	0.0269351	0.0139862	0.0574927	0.0370191	0	0.0311621	0.0645781	1.59931	0.0195787	0	0.0696542	0.0422172	0.0434827	0.252248	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024989MFS_assoc_dom
IPR020846MFS_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013579 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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