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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013578 ID=TCONS_00013578|Name=TCONS_00013578|organism=Clytia hemisphaerica|type=transcript|length=1563bp
CTCATACATTTGTTTAAAATCAAATGGCACTTTATGTGCCTTAACAAGTG
TTTAGGTAGTCTTTGGATATCTGGAAACAGGTTTTGTGCTGTCAATAGGA
ATCGCACGACAACAACCCCATATCGACTCCCACCATGCTTTCCATATGAT
TTTGTCAACTATGGTTTCGCACGTTTCCGAATTTTCTAGAAAACGGCGTA
CACGTGAGCAGAATTATTCAAGCTCCAATGAAACGTCTTTTGAACATCAT
ATGAATGTCACTATCTATTTTGAGCCTTGACTCCTGACATTTGTCATGTA
caaaaaaagttattatttcagcagaaaaataaacaaattttgttattgAT
GTTTATATTTGCATACTAGAGGAGACAGAGATTGCACAAATTTGTTATTT
TGACAACCTCCTATTGGTAAACTTATATAAATTTGATTGTCTTATGTATT
TCCTTTTGACTGCTAAAGGAAGATATAAAAAGGCTGACAGTTAACACAAA
AACTATACACAAGCAAAGTTGGTCTTTGTAAgtgagaaaaaaacataaac
agttctctgataattattttttggaaactttaaaaacaagaaaaatgaaa
gtgcTGGCACTTTGTATAGTTTTGTTTGGAACATGCCAAGGATTCTTATT
CCCAAAGATCAAAACTGTTGACCAATTGGATGTCGCCAAATATACTGGAA
GGTGGTATGAGATGTACAATTCCTTATTCCAACGGATCacattcgaaaaa
aattcttattgcaCCAACGCTATTTATACACCACGAAAAGGCAGTAACAT
TATTGGTGTTTTGAACTCTGGTGTGACTGGTGGACCAAAAGGAAAAGTGA
GTGATATCAATGGAACAGTCTACCAAACAGATCCAAGTAATGCACCTGGG
GAGTTGCTGGTCAGCTTCCCCTCAGCACCACAGTCAAAAAATGCTAATTa
tttggTGATCAAACTTGGTCCACCAACACACGGAGAGAAAGGCCAATATG
AATACACCGTCATAACTTCACCAGGAAAAAATTTCAGCTGGATTTTAGCC
CGTGATGTTGATGTATTCCGACAGAAATATGAAGCTGAAACACTCCAATT
CTTAAAAGATAACGGTTTTGTTTGGCCTTGGAATAAACCAATGAAAACGT
ACCAAGAAAAAGACTGTTTTTATGAAAGCTATCCGGAAGAAATCACTCCT
AGACAAGTCATTGTCTAATTATATTATAGATCACGTTCACACGGTGCGGT
TCCGTTTCGGTCCGAAATAAAATGAAGTCATTCCattggttaaattcaag
ttttacgtcatTTCTCAcaaatagaatggcttcattttgtttcggagcga
aacggaaccatCACGTGCAAACATGGTCTTAGTGACTCCGTTCCTTTTGA
TCATAGATTCACATTGAATAGATACCAGTAGAATATTCATTCACCATCAT
GTAGGActttagaaatttattttgatcTATTTTTTGTTAAGAACTCTCCT
TACATGTACATATTTTGATTGTATTGAAATGCAGAATATCGAATttacaa
tgaaagaaaaatc Run BLAST on NCBI protein sequence of TCONS_00013578-protein >TCONS_00013578-protein ID=TCONS_00013578-protein|Name=TCONS_00013578-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MKVLALCIVLFGTCQGFLFPKIKTVDQLDVAKYTGRWYEMYNSLFQRITF
EKNSYCTNAIYTPRKGSNIIGVLNSGVTGGPKGKVSDINGTVYQTDPSNA
PGELLVSFPSAPQSKNANYLVIKLGPPTHGEKGQYEYTVITSPGKNFSWI
LARDVDVFRQKYEAETLQFLKDNGFVWPWNKPMKTYQEKDCFYESYPEEI
TPRQVIV Run BLAST on NCBI transcript from alignment at sc0000170:343949..347250+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013578 ID=TCONS_00013578|Name=TCONS_00013578|organism=Clytia hemisphaerica|type=transcript|length=3302bp|location=Sequence derived from alignment at sc0000170:343949..347250+ (Clytia hemisphaerica)
CTCATACATTTGTTTAAAATCAAATGGCACTTTATGTGCCTTAACAAGTG
TTTAGGTAGTCTTTGGATATCTGGAAACAGGTTTTGTGCTGTCAATAGGA
ATCGCACGACAACAACCCCATATCGACTCCCACCATGCTTTCCATATGAT
TTTGTCAACTATGGTTTCGCACGTTTCCGAATTTTCTAGAAAACGGCGTA
CACGTGAGCAGAATTATTCAAGCTCCAATGAAACGTCTTTTGAACATCAT
ATGAATGTCACTATCTATTTTGAGCCTTGACTCCTGACATTTGTCATGTA
caaaaaaagttattatttcagcagaaaaataaacaaattttgttattgAT
GTTTATATTTGCATACTAGAGGAGACAGAGATTGCACAAATTTGTTATTT
TGACAACCTCCTATTGGTAAACTTATATAAATTTGATTGTCTTATGTATT
TCCTTTTGACTGCTAAAGGAAGATATAAAAAGGCTGACAGTTAACACAAA
AACTATACACAAGCAAAGTTGGTCTTTGTAAgtgagaaaaaaacataaac
agttctctgataattattttttggaaactttaaaaacaagaaaaatgaaa
gtgcTGGCACTTTGTATAGTTTTGTTTGGAACATGCCAAGGATTCTTATT
CCCAAAGATCAAAACTGTTGACCAATTGGATGTCGCCAAATATACTGGAA
GGTGGTATGAGGTACAAATgtctaaattctttttttccaaCCTGAGGTAT
ACGCGAATCCTAATGGGACTCTTccaaaaatttgccttgtccgagggggg
ggggggaaacttgctctgtttgaggggaATTTtgagtgtccagggggtca
actaatgcttgcCCAGGGGGtcaaagtcacaatgtccgggaagtaaattt
ccagaaaaatgctatatcctccacccccatattaaatttttttctgcaaa
agccCAAGGGAATGAAATGGAGAAGATAATGAATTTCATGACCCTTGGTC
GAAACTCTTTCAAAGAAACTAGCCTTGTATAACGTATTCGATTTATATTT
CTTATCGTCTTATATGACCCTCAGCTGAACTGCAACCCTTTATAGCATTT
GGTGATCAAATATTTGGCACCCTAATCAGCCCTAATAGCaatctttcttt
aataattaactAATATCATATTTCGATTATAGATGTACAATTCCTTATTC
CAACGGATCacattcgaaaaaaattcttattgcaCCAACGCTATTTGTAA
GTAAACCCCTATGGTTTCCATTCAGCAACTACTAGTGcaggttttttata
aggacaaactatataagaacataaggtttcggtGGACAAAATATTAATAA
CAAtgaattaagaatattttctaaGGCTTCGTGGACTCTTCTTTaggaaa
ttgctcaaaaatactcacaaaggggtgataaaaatttttacgcttgaaac
tcaaaaagttgagagcttccaaaggcttcaaaaactttgtatgttcttat
aaaaaaaacgtgtacattgaTCACATTGGTCACAAACCTCGACCATTCTT
TGCCTCCCCAAAATTCAATCACAATTCGATGCTGTGGGTAGCTCAAAGTC
AACTTCCAcctacaaatttcaaattacccTTGTAATTTTCCACTTCCTCA
GATACACCACGAAAAGGCAGTAACATTATTGGTGTTTTGAACTCTGGTGT
GACTGGTGGACCAAAAGGAAAAGTGAGTGATATCAATGGAACAGTCTACC
AAACAGATCCAAGTAATGCACCTGGGGAGTTGCTGGTCAGCTTCCCCTCA
GCACCACAGTCAAAAAATGCTAATTGTAAGTActttttattcatgatatg
caccattgcaatcaATGTCTTACACAAACtaaacagctgattggtttgcA
AGTGACGTGTTAGATGATTTTAGGTCACTtgtaaccaatcagctgttggg
tccatgatgtaatctttgaagacattgcaatggtgcatatcatgaactAT
CCTTTTAAGGAATACCACAAACTTAGTTCCTTATTTTGcttatttatgat
tttaataGCACTCACGAAAGATTTTATCACGTCCAttagtaaaaattaaa
aagtgataCTGGGTACGAGATTAGGATACCAAATGTTTAATGGCTTCTGT
TCTTTTTGTAAATAATATTGTGGGTATATAGGGTATCGTCCTATTATTTT
GTGTCTTAAAGACCCTAGAATAGTTTTTTCTAAACCCCCATCTACACGTC
ATAATATTCAACTACCCATTCAGTGTATCCATAACACGTTTAGCCGAGCC
ATGGCAGATCCAATTGATTATTTTATTAATTGCCTAAGCGTTAGTATGAA
AATTGTGAAGGTATCTTTAAACTTGATGAAGTCCCACCAGGAAGCTaacg
agaaaattttttttttttccaaattacCTAAGGGAAGAAATTACTTCCCG
CCAAATTCAAGCTTTTTTGTCAGTcgtcaaaattaattttcgctagggtt
ctttttaattttgttcaaggtttttcctaaaaaagcCCTTATTCTTTCCT
TTTCAGATAAAATACTGTCAAAATAACGGGTATTGTCACCAAATTACAAC
CTTTCTTAAttcccaaaaaataatttcgccACATACaaaaattcccgcca
aaatttcacACCTATAAACTTTGTCactttttatttagatttggTGATCA
AACTTGGTCCACCAACACACGGAGAGAAAGGCCAATATGAATACACCGTC
ATAACTTCACCAGGAAAAAATTTCAGCTGGATTTTAGCCCGTGATGTTGA
TGTATTCCGACAGAAATATGAAGCTGAAACACTCCAATTCTTAAAAGATA
ACGGTTTTGTTTGGCCTTGGAATAAACCAATGAAAACGTACCAAGAAAAA
GACTGTTTTTATGAAAGCTATCCGGAAGAAATCACTCCTAGACAAGTCAT
TGTCTAATTATATTATAGATCACGTTCACACGGTGCGGTTCCGTTTCGGT
CCGAAATAAAATGAAGTCATTCCattggttaaattcaagttttacgtcat
TTCTCAcaaatagaatggcttcattttgtttcggagcgaaacggaaccat
CACGTGCAAACATGGTCTTAGTGACTCCGTTCCTTTTGATCATAGATTCA
CATTGAATAGATACCAGTAGAATATTCATTCACCATCATGTAGGActtta
gaaatttattttgatcTATTTTTTGTTAAGAACTCTCCTTACATGTACAT
ATTTTGATTGTATTGAAATGCAGAATATCGAATttacaatgaaagaaaaa
tc Coding sequence (CDS) from alignment at sc0000170:343949..347250+ >TCONS_00013578 ID=TCONS_00013578|Name=TCONS_00013578|organism=Clytia hemisphaerica|type=CDS|length=2496bp|location=Sequence derived from alignment at sc0000170:343949..347250+ (Clytia hemisphaerica)
atgaaagtgcTGGCACTTTGTATAGTTTTGTTTGGAACATGCCAAGGATT
CTTATTCCCAAAGATCAAAACTGTTGACCAATTGGATGTCGCCAAATATA
CTGGAAGGTGGTATGAGATGTACAATTCCTTATTCCAACGGATCacattc
gaaaaaaattcttattgcaCCAACGCTATTTATACACCACGAAAAGGCAG
TAACATTATTGGTGTTTTGAACTCTGGTGTGACTGGTGGACCAAAAGGAA
AAGTGAGTGATATCAATGGAACAGTCTACCAAACAGATCCAAGTAATGCA
CCTGGGGAGTTGCTGGTCAGCTTCCCCTCAGCACCACAGTCAAAAAATGC
TAATTatttggTGATCAAACTTGGTCCACCAACACACGGAGAGAAAGGCC
AATATGAATACACCGTCATAACTTCACCAGGAAAAAATTTCAGCTGGATT
TTAGCCCGTGATGTTGATGTATTCCGACAGAAATATGAAGCTGAAACACT
CCAATTCTTAAAAGATAACGGTTTTGTTTGGCCTTGGAATAAACCAATGA
AAACGTACCAAGAAAAAGACTGTTTTTATGAAAGCTATCCGGAAGAAATC
ACTCCTAGACAAGTCATTGTCTAAatgaaagtgcTGGCACTTTGTATAGT
TTTGTTTGGAACATGCCAAGGATTCTTATTCCCAAAGATCAAAACTGTTG
ACCAATTGGATGTCGCCAAATATACTGGAAGGTGGTATGAGATGTACAAT
TCCTTATTCCAACGGATCacattcgaaaaaaattcttattgcaCCAACGC
TATTTATACACCACGAAAAGGCAGTAACATTATTGGTGTTTTGAACTCTG
GTGTGACTGGTGGACCAAAAGGAAAAGTGAGTGATATCAATGGAACAGTC
TACCAAACAGATCCAAGTAATGCACCTGGGGAGTTGCTGGTCAGCTTCCC
CTCAGCACCACAGTCAAAAAATGCTAATTatttggTGATCAAACTTGGTC
CACCAACACACGGAGAGAAAGGCCAATATGAATACACCGTCATAACTTCA
CCAGGAAAAAATTTCAGCTGGATTTTAGCCCGTGATGTTGATGTATTCCG
ACAGAAATATGAAGCTGAAACACTCCAATTCTTAAAAGATAACGGTTTTG
TTTGGCCTTGGAATAAACCAATGAAAACGTACCAAGAAAAAGACTGTTTT
TATGAAAGCTATCCGGAAGAAATCACTCCTAGACAAGTCATTGTCTAAat
gaaagtgcTGGCACTTTGTATAGTTTTGTTTGGAACATGCCAAGGATTCT
TATTCCCAAAGATCAAAACTGTTGACCAATTGGATGTCGCCAAATATACT
GGAAGGTGGTATGAGATGTACAATTCCTTATTCCAACGGATCacattcga
aaaaaattcttattgcaCCAACGCTATTTATACACCACGAAAAGGCAGTA
ACATTATTGGTGTTTTGAACTCTGGTGTGACTGGTGGACCAAAAGGAAAA
GTGAGTGATATCAATGGAACAGTCTACCAAACAGATCCAAGTAATGCACC
TGGGGAGTTGCTGGTCAGCTTCCCCTCAGCACCACAGTCAAAAAATGCTA
ATTatttggTGATCAAACTTGGTCCACCAACACACGGAGAGAAAGGCCAA
TATGAATACACCGTCATAACTTCACCAGGAAAAAATTTCAGCTGGATTTT
AGCCCGTGATGTTGATGTATTCCGACAGAAATATGAAGCTGAAACACTCC
AATTCTTAAAAGATAACGGTTTTGTTTGGCCTTGGAATAAACCAATGAAA
ACGTACCAAGAAAAAGACTGTTTTTATGAAAGCTATCCGGAAGAAATCAC
TCCTAGACAAGTCATTGTCTAAatgaaagtgcTGGCACTTTGTATAGTTT
TGTTTGGAACATGCCAAGGATTCTTATTCCCAAAGATCAAAACTGTTGAC
CAATTGGATGTCGCCAAATATACTGGAAGGTGGTATGAGATGTACAATTC
CTTATTCCAACGGATCacattcgaaaaaaattcttattgcaCCAACGCTA
TTTATACACCACGAAAAGGCAGTAACATTATTGGTGTTTTGAACTCTGGT
GTGACTGGTGGACCAAAAGGAAAAGTGAGTGATATCAATGGAACAGTCTA
CCAAACAGATCCAAGTAATGCACCTGGGGAGTTGCTGGTCAGCTTCCCCT
CAGCACCACAGTCAAAAAATGCTAATTatttggTGATCAAACTTGGTCCA
CCAACACACGGAGAGAAAGGCCAATATGAATACACCGTCATAACTTCACC
AGGAAAAAATTTCAGCTGGATTTTAGCCCGTGATGTTGATGTATTCCGAC
AGAAATATGAAGCTGAAACACTCCAATTCTTAAAAGATAACGGTTTTGTT
TGGCCTTGGAATAAACCAATGAAAACGTACCAAGAAAAAGACTGTTTTTA
TGAAAGCTATCCGGAAGAAATCACTCCTAGACAAGTCATTGTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013578-exon-sc0000170-1491911889:343949..344659 | TCONS_00013578-exon-sc0000170-1491911889:343949..344659 | Clytia hemisphaerica | exon |
| TCONS_00013578-exon-sc0000170-1510915933:343949..344659 | TCONS_00013578-exon-sc0000170-1510915933:343949..344659 | Clytia hemisphaerica | exon |
| TCONS_00013578-exon-sc0000170-1575043694:343949..344659 | TCONS_00013578-exon-sc0000170-1575043694:343949..344659 | Clytia hemisphaerica | exon |
| TCONS_00013578-exon-sc0000170-1491911889:345131..345194 | TCONS_00013578-exon-sc0000170-1491911889:345131..345194 | Clytia hemisphaerica | exon |
| TCONS_00013578-exon-sc0000170-1510915933:345131..345194 | TCONS_00013578-exon-sc0000170-1510915933:345131..345194 | Clytia hemisphaerica | exon |
| TCONS_00013578-exon-sc0000170-1575043694:345131..345194 | TCONS_00013578-exon-sc0000170-1575043694:345131..345194 | Clytia hemisphaerica | exon |
| TCONS_00013578-exon-sc0000170-1491911889:345600..345773 | TCONS_00013578-exon-sc0000170-1491911889:345600..345773 | Clytia hemisphaerica | exon |
| TCONS_00013578-exon-sc0000170-1510915933:345600..345773 | TCONS_00013578-exon-sc0000170-1510915933:345600..345773 | Clytia hemisphaerica | exon |
| TCONS_00013578-exon-sc0000170-1575043694:345600..345773 | TCONS_00013578-exon-sc0000170-1575043694:345600..345773 | Clytia hemisphaerica | exon |
| TCONS_00013578-exon-sc0000170-1491911889:346637..347250 | TCONS_00013578-exon-sc0000170-1491911889:346637..347250 | Clytia hemisphaerica | exon |
| TCONS_00013578-exon-sc0000170-1510915933:346637..347250 | TCONS_00013578-exon-sc0000170-1510915933:346637..347250 | Clytia hemisphaerica | exon |
| TCONS_00013578-exon-sc0000170-1575043694:346637..347250 | TCONS_00013578-exon-sc0000170-1575043694:346637..347250 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000170 | supercontig | sc0000170:343949..347250 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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