TCONS_00013510 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013510
Unique NameTCONS_00013510
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1800

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013510 ID=TCONS_00013510|Name=TCONS_00013510|organism=Clytia hemisphaerica|type=transcript|length=1800bp
ttagttaaatgaatataaattaaagtaaaattttaatggCTGAGGATTGT
CATTTGAGTGGATCAGAAACTGAGAGTCTATCAGATTCATCAGAGAGCAC
AGAAACCTACTTTGatACAAAACATTATTTTGATTGCTCAGCCAAAGATG
AgttatcatttttgaaaaatggctgTTTAAAATTattggtaaatttcaat
caaaagaaaCCTTGGAAATCCATCGAATCCTCAGAATTGTTTGGTAGAAC
GTTTTTCTTCCACCTTTCAGATGAGCTTTCTGATTTAGTGTCAGTTATCA
GATTTGGCATTTATCAGCTTATAAATGCCGTATCCAACCCTGCTCAAATA
AATGCGTCTCTTCATGGATTTGCAAAGCAATTGAACATAAAAGGCTTCAA
TACAGAAGTTACAAAGACATTGTTTTTCATATTGGCAAACTTAGAGAGAA
TGCCCCATTGAAGAATTTCGACAAGCTCAACAACGAGAGGAAATTCTAAA
GAAAGTTGTTCTATCGTTTGTTGACATGGGAACAAGTAAATCATTATCCG
ATATTTACGAAGGAGCGTCATTAACTGGAAGCCTCAATCAAGGAACATTT
ATTGCATCATtgtttgaagaaaatttgaaatacaaaGGTTCGCTTGTCAA
CAGAGATATTGATATTGATTGCTTGATAAATGTTAGACTcgatctaaaaa
aaaaacagaaatgtCTGAGAGAAATCAAAGGAAAACCGGGATATGTGCAA
CTCCTGACCCGCTGTATACCAGATAAAGGAAATTGGTTTCTTTTTATCGA
GAAAGCAAACAAATATATCCAACCAGTCATGCTTAAAAGCAAGGTAAAGG
ATAAATTGAATGGTGAAGAATCAAACACCAGGGAAAGAGCAGTGCAAGCT
CTTTTTCTCTATCATTTCTTAAAACGAGGAATCATATTCAAAAGTATAAA
TGTAAAGGTTTCCGGGAAAACAAGCAAAGCTACTGtgaaacatatttttc
aaattcagaaagATGAGAAACTTTACATGAATGCCGAATTTGATTATGCT
TTTATGATTAAAGTATTCTACAGACCAAGGGTCGTGTTAAAATTTCTAAC
AAGGACACAATACAATGTTAGTAGAGAAATATCAGAATATATTCATGTTC
TAGCTAAAACATCACACGAGCAAAAACACAACATCAATACAACAGAATGG
ACTTATTCTTTCTCTCATATCGAGAATTTTATATTGAATTCATTTTCTGA
TGCAAAAAAACTTGTTTACGTGATTTTCAAATCGATATTCAAGAAATCGT
TAAAGTTTTTAGATGAAGAAATAATAACTTCTTACATCGTCAAAACTATT
GTTTTATGGAGATTCGAAGATGTCAATTTGGACAACTTCGACGATTGGCT
AAATGACACAAAGATTTGGGAAGCGATTGATATTTTATTTAGAGACTTAA
TTGTAGCAATTGAAAGAGGATTCTTAAAACATTATTTCATACCAgaaatc
aatgttcttaaacGTTTTGACAAAAGTTTGAGAGACAATTGTCAaaaacg
aataaaaaatatccgaacaaatttgaaaacaatacTCCTTATTAGTGAAA
TAAGTGAGGCAAGAAATATTCTTGAAGAGTTGTTGTTATTGTTCTACGAT
GCTCAAACCTATCTAACTTTGGAGGCATTTGTCGAGATTTTAGAAGATCC
ATTACGCCATTTTTTATAGAATTATATATTTTATTGTATCTTTTATGTAT
GTTGAGAACAAAGATTTGTttgtggataccccttaaaaccttaCAACAAC
Run BLAST on NCBI

transcript from alignment at sc0000168:343962..350765-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013510 ID=TCONS_00013510|Name=TCONS_00013510|organism=Clytia hemisphaerica|type=transcript|length=6804bp|location=Sequence derived from alignment at sc0000168:343962..350765- (Clytia hemisphaerica)
TTAGTTAAATGAATATAAATTAAAGTAAAATTTTAATGGCTGAGGATTGT
CATTTGAGTGGATCAGAAACTGAGAGTCTATCAGATTCATCAGAGAGCAC
AGAAACCTACTTTGGTAAGACCACTGACCTTTATTATACCCTGAACTAAT
TCTTTCGATCCCTGCTAAGGAAAATCTTCAATTCGAATTGGCACCCTAAT
GGTAGCACTAGTCAATAGCGGTTTAAATACATTGAGAGCGCTAGCTTTAC
TTTTCTTGGAATACTTTTCATGATGTAGCAATGTTAAACGTTAATTTTCA
CCATTGTGATTGCTTCTTTTCGGGTAATACTTTCAAAGAAACTCTGATTA
AAGATGGGGATATAAGGGATATATAAAGGTCATTGGGTAAGACCTTTCCC
AACAATTCAACTTGTAACTTAGTGAGAGTTGACATATATATTGTTTGTTT
TTCAACTTAATAATTGTCTAATTTTCTTTGATTTTAGATACAAAACATTA
TTTTGATTGCTCAGCCAAAGATGAGTTATCATTTTTGAAAAATGGCTGTT
TAAAATTGTAAGTTGATGTAAAACTACTCTTCAGAATAGAGATTTCTTTA
TAACTTAAATAGATAAATTATGAACAAAATATGATTTATCATGATCATGA
TAACTTTGTAAGACAGGGATTTGCTTAGAAATGTAGAATACTTTCTTGCA
AGGCCTTTACCAAACGTGACCAAATATGGCAAAAAAACTGTTTAAGTTAA
CTGATGTTTTTATTTTATCTGCTCTCAAGGAAAACTTTTTTCATTTTTTC
CACTTGAATTCACTCTGTTTCATCATGTGCTAAGATGAAGAAAGATGCAA
TGATACTGTAGGCTATATGATATAATTTTCATTTGTTTTTTTTTTCTGTG
AAATATCATCAGATATTTTTTCATTCATTCATAAGGTTTTAATATTTGTT
TAGATTGGTAAATTTCAATCAAAAGAAACCTTGGAAATCCATCGAATCCT
CAGAATTGTTTGGTAGAACGTTTTTCTTCCACCTTTCAGATGAGCTTTCT
GATTTAGTGTCAGTTATCAGGTGCGTCAGTTTTTACTGTTTTTTTTTTAG
ATTATAAATCTCTTTAAAAATGCTCATGATTACAAAAGGTATTTTTTAAT
TTTTTTATCTCAAACGCCCAAATAATTAAATTAATGCATGTTGATAACTG
AATTTCACTTTATTCCGTATAGATTTGGCATTTATCAGCTTATAAATGCC
GTATCCAACCCTGCTCAAATAAATGCGTCTCTTCATGGTAAGTTTTTGCA
AAAATAATGATGTTTTTGTGTTATATGATAGAATTTGATATAATTGAAGA
ATATTGATCATGTTTTCTCTTACATTTGAAGGATTTGCAAAGCAATTGAA
CATAAAAGGCTTCAATACAGAAGTTACAAAGACATTGTTTTTCATATTGG
CAAACTTAGAGAGGTATCTATTTTACCCTTCTTTCTCTCTAAATTTTCCA
AGTGGTGGATTTCTACTCTTCATCTTTTTCAGCAATATTTACTGTAGTCA
AAATAACGTTTTTCTATATCCAACGGTGGATGTATGTATCTATATAGCAC
CTTGGGATCCCTGTCTCTATTGACTATGTTAATTTCTTTTGTGAAGGATT
TTACATAGGTATCTGTTAAAAAACAGAGCATTTTCTCTTTGTACAAATAA
ACTTAAACCATTATGGTAGTACACATAATGGTAAAATATATATTTTGAAC
AGTCACGTCCACCTTAAGAAAAAGTAACAGCTACAAGTAAAATGTGCAAT
TTTTAAAAATGTTGGTGAAACCATAACTAATAACATTGGAATACATAAAA
CAAAGGTTAAAACAAATGTCAAAAAGAAATGATTTAAGTCTTTACGGCCC
GCAGCAGTTTGCATGAATGGGCATTTTTATTTGGTTGCGTGAATGCGAGA
ATGCTTGAATTGAAAAAACTTGCGTGAACGTGAAAATCCACTTTTTGATT
GCGTGAATGCGTGAATCTGGGCTATCTTGTGTGTCAATACATGAATTTTC
CCTTTTTTCACCGATTATGTGCAGTTTTCCTGATTTTCCAATGTTTCCCT
GATTTTTCCAGAAAAATTTCCTGATTTCTGAAAAATCAGGTAATTGCGTG
AAACTAGAGGAAAATTTGTGTGAATGCGTGAATTTTGAAAAAAAATTGCG
TGATTGCGTGAATTGAGAGTCCGCTGGGGGGGCTCCTTCACACCACTGGC
CACGAATGCTGGAAAAATGGGAAAATCTGGAAAAACTGGAAAAATGGCAT
TTTTTCAGAAAATTAGTTGAAAAAACTGGAAATAGGTACATTTTCCAAAC
AGGAAAGCTGGAAAAACTGGAAAAAAATTTTTATACCGGGTGCGCCACAA
AAAAGTTTCTCTCTTTAAAGTGAATTTTCTCGAGGTCTAAAAATCAAAAA
ATAGCCAATCCTTTTTCATTGGAAAGAAAAAAGATAAACGTTTTGATGGG
TCATTTATAAAATTTGGTTCATTAGTTCAAAAGTTATGCTCAATTTAATA
CAAAAGTTACTTTCAGAAAATACTCAAAAACGTTAAAAATCGACCTATCA
AATTGAACAGAAGCATAATTACATGGTACACCAGTATTTTCGTTTCAGTC
ATTAAAAATGATAATTAGCTGTCTAAATGACCTTTTATTATATAAAGGAA
GGTTGAATTTCATTGAAATGAAGAAAATTCGTCGAAAAAGGCCAAAAAGC
TGGTAAAATTCACAAAAATACATCAAATATGGGTTTCGAGGTGGATCCAG
TCTTACATAGACTTTATCCAGTCTAGAACCAAAAATCTGAAGAAAATTTC
GGTAAAAGTAAATTAAATTTATTTTGATGAAGATTTGAAACCCTTTCGAC
CCTTTCGGTTTCAAAATTTATGTGTTTAATTACCGAAAAATGCTTTTAAT
CATGTAAAGGCTATTGCGATTGCCAAATTTAAAATAAAAATTTGATTGGT
CGATTTTTAACGTTTTTGAGCACTTTCAGAAAGTAACTTTTTTATTCAAT
TGAGCGTAACTTTTGATCTAATGAATCGAATTTAACAAAATGAACCATCA
AAATTTAAGTTTATCTTTCTTCTTTCCAATGAAATAGAAATGATTCTTTT
AGAATTAGTAGATTTCGAGAAAATTAGTTTCAGAGAGAAACTTTTTTGTG
GCGCACCCGGTAGTTTAATTTTAACCTTATGTCAGGAATTTGTTAGAATT
ATAATGTGATTAAAGTCTATTCATGATAAGTGTGCACTAAATTTTTCTTA
AAAAGTTTGGTATCGTTGGGAAGTTAGGAAGGAGCTTATTAATTTACTGT
TAGGTTTTTCTGCGAAATTTGAAAAGAGCATGAAGGAAAATGAATTCATA
TAAACGTTATTTTTACATTATTTTAGGAAATAATAAATTTTTATTTTCAT
TGCTTTACAGACTGCCAAATTTTTGAACATAAAATTCTCAAAACCTTGGA
AAAACTAATAATTTTGAGCATAAATTCTACCTTTTTTAGTCTTTTTTTTT
CTATTTCGCATTTTCGTCAAGATGTGTAGTAGTTTTTGCTGCCTTTTTAG
GAGATTTTATAGGTTTAATTCTACTTTCATTCTTATTTTTTTGCCGACCA
ACCGAACCTCTTTTTTGGGTAGCTTGACCCGTAAAACAACAAATTAAATT
GGCCTCGCCTAAGAACAAACTATATAGGAACATAAAACTTCGTCTTTCTT
CTTTCCTCTCTAAAACTACACCATTACATCAAGCTGGCCAGGGCGGCGAT
GCACCCTAAAAGCTCACTTTGTTGCAACGTAAAAAATTTCTCTACGCATT
TTTTTGTATAAGAACAAACTATATAAAACATAAGGCTTTGATGGCCAAAA
TGTGAAGAACAAGTTGAGAAACATTTCAAGGCTTTGCAGAGTCTAAAAGC
CCTGATTAATCCAAAAAATTTGCATGTTCTTATAATAAAATAATGCGTAA
ACGTAATGATAATCTAGCTTTAAAAAAGCTCCCTTTTTAATAATATAAAG
ACAATTCGATCTCTCTATCTATTTTTTATATAATATTGGACAATATAAAA
TAAATAAAGGTAGGAGTTAATTGAAGTTATTTATTAGGGATTGCATCAAA
ATCAACAAGGATCTTTTAAAAACTTTTGATTGATTTCCTCTCGAGCTAAT
CATTAAGGAACATTAGCTATGAAATCGTCCGTAGTACAGAAAGAACTTTT
TAGAGTGAGACAAATGAAAAGACAAATATCCATCGCACAGATTTGATAAG
TACATTTTGTGCACTGTTTCGTGTTATTGGTGAAGAAGGATGTACAAAAA
CCCAATTCAACGAATTTTGTTTGTTTTTGCCTTTTATTTTTACATCGAAC
TTTTGACTACAAATTCAAGAATCAACAGTAAGTTTAAGAAATCCATGGAG
GTAATTAAGATAGATGGAGAGTCAATGCCTTTTGTTCTATTCTGATTTAT
CATCGGAAGCAAACAGCTGTTTGGTTGCTTTGGGAATAAGATGATTAATT
TTGGGTATACTCGTGGGAATATTTAAGATGAATGAAAAGACATTACATTT
TTAACAAGTATATTGAAATATAATAGCCTTGTCGTGAAAAATTGAATTAA
AAACTTCACATAATAAGCACAATACTCCAAACTTCTAGGGGAAGCTGCCA
TCGATAGATTTAAAAAAGAATTACTTGTTACGATTAGGAACCTTGTATCG
ATCATTTTGTCAGAGTATGAAAACCGCTGCCCACTAGACGTGAAGATTTT
ACGATAAGAAACTTTCAATGATAATGTGATGCAACTCTCAATGTTAACAA
AATGCCAACCCAAAAATTTGTCCTTATGAAATTAATATACTCTTTTAGTC
TTACATCAGTTGAAACTGTTTCGAATCGCATTTTAATCGCATGTCTCTTT
CTGTTCTTATAAAGTTATAAATTGATGTTTTTTGCTTCCAATGATGGTAC
ATCAAAGAAAAGCCGCTTTGAATAGATTTATAAAAGATTTCAACGATCAT
TTAGGTCATTACCGAAACGTTTTCTCTCCATCTGTATCTTCATTACCTCA
ATGAGAAATCCAATCTAACTTCTATTGTTTACATTGAAACTTACACTACT
CCAGGAGCGGTCTAGACATACCCTTACAAGTAGTATATACCAATTTTTAT
TATGAACTTTTCATAATATCATTCCTTTGGATTTATTACCTAAAAGCCGT
TTTATATTTATTTCGATAATTTGCCACAATGATGACCAAGCATAAAAATT
ATTGGAATGCAAGCCTCCAAATCCTGGATTTTTTATTCAATTAGAGTTTG
CAAAATATGCGGTCCAATATACTTAATATACATATTTCCAATACTTGTTC
TGGAAACGCTGTGCCTTTTTTAATTAAACAATTCTATTTTGTAACCTATT
AGAATGCCCCATTGAAGAATTTCGACAAGCTCAACAACGAGAGGAAATTC
TAAAGAAAGTTGTTCTATCGTTTGTTGACATGGGAACAAGTAAATCATTA
TCCGATATTTACGAAGGAGCGTCATTAACTGGAAGCCTCAATCAAGGAAC
ATTTATTGCATCATTGTTTGAAGAAAATTTGAAATACAAAGGTTCGCTTG
TCAACAGAGATATTGATATTGATTGCTTGATAAATGTTAGACTCGATCTA
AAAAAAAAACAGAAATGTCTGAGAGAAATCAAAGGAAAACCGGGATATGT
GCAACTCCTGACCCGCTGTATACCAGATAAAGGAAATTGGTTTCTTTTTA
TCGAGAAAGCAAACAAATATATCCAACCAGTCATGCTTAAAAGCAAGGTA
AAGGATAAATTGAATGGTGAAGAATCAAACACCAGGGAAAGAGCAGTGCA
AGCTCTTTTTCTCTATCATTTCTTAAAACGAGGAATCATATTCAAAAGTA
TAAATGTAAAGGTTTCCGGGAAAACAAGCAAAGCTACTGTGAAACATATT
TTTCAAATTCAGAAAGATGAGAAACTTTACATGAATGCCGAATTTGATTA
TGCTTTTATGATTAAAGTATTCTACAGACCAAGGGTCGTGTTAAAATTTC
TAACAAGGACACAATACAATGTTAGTAGAGAAATATCAGAATATATTCAT
GTTCTAGCTAAAACATCACACGAGCAAAAACACAACATCAATACAACAGA
ATGGACTTATTCTTTCTCTCATATCGAGAATTTTATATTGAATTCATTTT
CTGATGCAAAAAAACTTGTTTACGTGATTTTCAAATCGATATTCAAGAAA
TCGTTAAAGTTTTTAGATGAAGAAATAATAACTTCTTACATCGTCAAAAC
TATTGTTTTATGGAGATTCGAAGATGTCAATTTGGACAACTTCGACGATT
GGCTAAATGACACAAAGATTTGGGAAGCGATTGATATTTTATTTAGAGAC
TTAATTGTAGCAATTGAAAGAGGATTCTTAAAACATTATTTCATACCAGA
AATCAATGTTCTTAAACGTTTTGACAAAAGTTTGAGAGACAATTGTCAAA
AACGAATAAAAAATATCCGAACAAATTTGAAAACAATACTCCTTATTAGT
GAAATAAGTGAGGCAAGAAATATTCTTGAAGAGTTGTTGTTATTGTTCTA
CGATGCTCAAACCTATCTAACTTTGGAGGCATTTGTCGAGATTTTAGAAG
ATCCATTACGCCATTTTTTATAGAATTATATATTTTATTGTATCTTTTAT
GTATGTTGAGAACAAAGATTTGTTTGTGGATACCCCTTAAAACCTTACAA
CAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007543XLOC_007543Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013510-exon-sc0000168-1575043694:350652..350765TCONS_00013510-exon-sc0000168-1575043694:350652..350765Clytia hemisphaericaexon
TCONS_00013510-exon-sc0000168-1575043694:350209..350278TCONS_00013510-exon-sc0000168-1575043694:350209..350278Clytia hemisphaericaexon
TCONS_00013510-exon-sc0000168-1575043694:349696..349812TCONS_00013510-exon-sc0000168-1575043694:349696..349812Clytia hemisphaericaexon
TCONS_00013510-exon-sc0000168-1575043694:349479..349543TCONS_00013510-exon-sc0000168-1575043694:349479..349543Clytia hemisphaericaexon
TCONS_00013510-exon-sc0000168-1575043694:349303..349384TCONS_00013510-exon-sc0000168-1575043694:349303..349384Clytia hemisphaericaexon
TCONS_00013510-exon-sc0000168-1575043694:343962..345313TCONS_00013510-exon-sc0000168-1575043694:343962..345313Clytia hemisphaericaexon
TCONS_00013510-exon-sc0000168-1510915933:350652..350765TCONS_00013510-exon-sc0000168-1510915933:350652..350765Clytia hemisphaericaexon
TCONS_00013510-exon-sc0000168-1510915933:350209..350278TCONS_00013510-exon-sc0000168-1510915933:350209..350278Clytia hemisphaericaexon
TCONS_00013510-exon-sc0000168-1510915933:349696..349812TCONS_00013510-exon-sc0000168-1510915933:349696..349812Clytia hemisphaericaexon
TCONS_00013510-exon-sc0000168-1510915933:349479..349543TCONS_00013510-exon-sc0000168-1510915933:349479..349543Clytia hemisphaericaexon
TCONS_00013510-exon-sc0000168-1510915933:349303..349384TCONS_00013510-exon-sc0000168-1510915933:349303..349384Clytia hemisphaericaexon
TCONS_00013510-exon-sc0000168-1510915933:343962..345313TCONS_00013510-exon-sc0000168-1510915933:343962..345313Clytia hemisphaericaexon
TCONS_00013510-exon-sc0000168-1491911889:350652..350765TCONS_00013510-exon-sc0000168-1491911889:350652..350765Clytia hemisphaericaexon
TCONS_00013510-exon-sc0000168-1491911889:350209..350278TCONS_00013510-exon-sc0000168-1491911889:350209..350278Clytia hemisphaericaexon
TCONS_00013510-exon-sc0000168-1491911889:349696..349812TCONS_00013510-exon-sc0000168-1491911889:349696..349812Clytia hemisphaericaexon
TCONS_00013510-exon-sc0000168-1491911889:349479..349543TCONS_00013510-exon-sc0000168-1491911889:349479..349543Clytia hemisphaericaexon
TCONS_00013510-exon-sc0000168-1491911889:349303..349384TCONS_00013510-exon-sc0000168-1491911889:349303..349384Clytia hemisphaericaexon
TCONS_00013510-exon-sc0000168-1491911889:343962..345313TCONS_00013510-exon-sc0000168-1491911889:343962..345313Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000168supercontigsc0000168:343962..350765 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.35084	3.76719	3.45257	1.79895	44.766	31.1825	24.6394	24.4706	15.7015	10.5363	9.26047	8.73869	5.96389	5.97297	8.98621	11.0309	9.28367	8.81139	9.21845	7.6831	12.1763	10.1193	5.83225	8.91553	9.2052	11.0319	9.25752	6.45087	4.44158	4.50453
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013510 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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